TCONS_00002316-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00002316-protein
Unique Name	TCONS_00002316-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	504

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00002316-protein ID=TCONS_00002316-protein|Name=TCONS_00002316-protein|organism=Clytia hemisphaerica|type=polypeptide|length=504bp
MLRFKSPTVDAGFCWPMLVMSSTIYFLLFGTLYSYGVWLPRIMEEFNCNQ
EQAAWVGSMASGLLVLLAMPASISCNYLGVFTMSILGSIMCGSGLIISSH
LQNIYHLYLSFGVLLGIGLALLYTPTLVMVGRWFDKYQTQATTFMMIGAP
IGSLIFNPLMEKIMENYNLRSAMNLYGIMFLGITFICSFGYLPFSQKLIK
KDVDIESKLEKNKIDCGFKFRKKLLRNNAFWLFCVCRFFAILAYYVPLFH
LIKYAMTIGISSSTASLMLAVWSGSNLFGRICYGCFIANHREKLLATYQI
SMFLSGVVSIAAYFADNTWSLFLYCCVYGIFDSSNIGLASLVTIDLTSPL
DLGAAWGIQQTINGIPSIAGPVLIGAMNDAKLLSANYMFVFTGGTFILGS
IFMNFARITHNRTRQSEIPNTELKDVYNTDQNESLDESHLQKDVYITNQK
ISKENVKSSELPKQTSVENFSFDNKTFDVDIIRNEKESLSSVDFSKDTQN
GKIV

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_001224	XLOC_001224	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00002316	TCONS_00002316	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011701	MFS
IPR020846	MFS_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0055085	transmembrane transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.20.1250.20		coord: 215..422 e-value: 4.0E-24 score: 84.5
None	No IPR available	GENE3D	1.20.1250.20		coord: 11..205 e-value: 4.7E-19 score: 68.0
IPR011701	Major facilitator superfamily	PFAM	PF07690	MFS_1	coord: 24..284 e-value: 4.5E-21 score: 75.1
IPR020846	Major facilitator superfamily domain	CDD	cd06174	MFS	coord: 18..407 e-value: 2.60238E-25 score: 104.703
IPR020846	Major facilitator superfamily domain	SUPERFAMILY	103473	MFS general substrate transporter	coord: 13..413

Blast

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BLAST of TCONS_00002316-protein vs. Swiss-Prot (Human)
Match: MOT12 (Monocarboxylate transporter 12 OS=Homo sapiens GN=SLC16A12 PE=1 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 3.350e-33
Identity = 105/400 (26.25%), Postives = 191/400 (47.75%), Query Frame = 0

Query:   46 FNCNQEQAAWVGSMASGLLVLLAMPASISCNYLGVFTMSILGSIMCGSGLIISSHLQNIYHLYLSFGVLLGIGLALLYTPTLVMVGRWFDKYQTQATTFMMIGAPIGSLIFNPLMEKIMENYNLRSAMNLYGIMFLGITFICSFGYLPF----------------SQKLIKKDVDIESKLEK----NKIDCGFKFRKKLLRNNAFWLFCVCRFFAILAYYV-PLF-HLIKYAMTIGISSSTASLMLAVWSGSNLFGRICYGCFIANHREKLLATYQISMFL-----SGVVSIAAYFADNTWSLFLYCCVYGIFDSSNIGLASLVTIDLTSPLDLGAAWGIQQTINGIPSIAGPVLIGAMNDAKLLSANYMFVFTGGTFILGSIFMNFARITHNRTRQSEI 418
            F  +  Q AW+ S+   + +L A   S+  N+L      +LG ++  +GLI+SS   ++ HLYL+ GVL G+G AL Y+P + MVG++F + +  A    M G+ IG+ I  P+++ ++E ++ R A+ + G   L +  +C     P                 +QK   K V   S L K      + C  +     L  + F +  V   F  +AY   PLF +L+ YA+++G+S   A+ ++++    ++ G I +G ++ + R   L  YQ   +L      G+  +      +   L  + C +G FD + + L  +VT ++     L +A G+   ++ +P +  P + G + D    S    F+  G + I  S+ + FAR+   R R++++
Sbjct:   50 FTQDYAQTAWIHSIVDCVTMLCAPLGSVVSNHLSCQVGIMLGGLLASTGLILSSFATSLKHLYLTLGVLTGLGFALCYSPAIAMVGKYFSRRKALAYGIAMSGSGIGTFILAPVVQLLIEQFSWRGALLILGGFVLNLC-VCGALMRPITLKEDHTTPEQNHVCRTQKEDIKRVSPYSSLTKEWAQTCLCCCLQQEYSFLLMSDFVVLAVSVLF--MAYGCSPLFVYLVPYALSVGVSHQQAAFLMSILGVIDIIGNITFG-WLTDRR--CLKNYQYVCYLFAVGMDGLCYLCLPMLQSLPLLVPFSCTFGYFDGAYVTLIPVVTTEIVGTTSLSSALGVVYFLHAVPYLVSPPIAGRLVDTT-GSYTAAFLLCGFSMIFSSVLLGFARLI-KRMRKTQL 441

The following BLAST results are available for this feature:

BLAST of TCONS_00002316-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00002316-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
MOT12	3.350e-33	26.25	Monocarboxylate transporter 12 OS=Homo sapiens GN=...	[more]

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TCONS_00002316-protein (polypeptide) - C. hemisphaerica