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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00001945-protein ID=TCONS_00001945-protein|Name=TCONS_00001945-protein|organism=Clytia hemisphaerica|type=polypeptide|length=2400bp
MKEKQDVLKLHLLKEKGKGLGIQLTKNTDTKKKGIFISHLLEDSVAEHDG
RLQIGDEILFINGQSLLTLGHKEAVQLLHSASNPVQLVISRKLVSEKRQS
SRKPSKSDVSPELFENNNNIFIGDVESPRLYTPTSEHHTKEIILINGRDG
KKLGFSMAGGAEYGSPLVVKNILAGGIASLDGRLRIGDHLLKVNDIPLDN
FKYNEAVSLFKSLKQGQIKLLVKTIRTRRSSNSSNDSTPRDLIDGANIDV
VIKKVPGKGLGVGFGQSSRSGIFIKYLAKGSLAARKSLLQLKDQVVALNG
IGTRDTSLDDFHKIIHNIQPGDVRLSVIRHHRDSSGRGSMTPETSRSRSE
TGSSVSSGVSTVGSGNDLAGLMSPAVPLNKQKQVYKRERLRSAILLNESD
DDDDYEDEAMIALYQKRLKAKAEKAESAKTKDGWLMKHDVINSDEDGGYH
GNEEDAVMNIEMKQHSPNQKTMGNKKPSKEEGVYPGVDADGLLKVIIERD
KTGSLGLSIKMKKNNKTQGAHEGVYAKNVAVGGSADRGGVKSGDQIIQVN
KTKMEDLTYGGVIAFFKKIPKKTTFVLRRPSSEDTRLSTPSSTPQKKTNS
TSSLSVPNLIDDDDMNAQSQNTPILRNSILESSFRHSRTPSFRRTNSQQQ
GGVTRASTFKIIGKIGGIGVPLPESSDVPEGYNVHLLEVSLTKGENLGLS
LVPATSKLKSYLQIRQIQLTSPCVDLLLRNDAIFSVNGISFKHINHAQAL
QILKQCEHLVKLVILREKDTTAETKNDHVTPPRHIEKKVRLKSPKTNDAL
PGTIVNELKSHLIRPTLHRRTTENSSLVSIPQLTGNGHKSSPVLNQRKAS
VKKNLAVPNRSDEDSSSLSSNPNTPSSLPKCYAVNERTNVGAFMVKKEKT
YKVLGLDVMMDELGLCHVTEISKHGMFANDNRIRVGDNLLAINKESLSGK
PISFVRNAIRSVSRGDVEIILRAAPDEDEESGDSSSTNRNADELESVITT
ATTARFDDFHDPTELPLPADTRSKVPTQRQTSFNASKNGIPAPSTFQSDQ
ESSSDDDAYSDVTCLPPAPPKPIAPHLIGDDNDSDNESCFSAMPAPPPPV
TNFKPKNGSPSSRRSTRKRIQPDFDDAKSFRSDFDDGKSDFYIPPPPPPV
LKSALGEGYASDNSDEDSQSDKEREKLGHKKSPVVEEENLAYKRRLSIEI
AQKFVNQNIEGDENLAISRNDEEPTEIYYPRSYHQQKDKKKSLFSRLKSK
LLLPSKNDLNSPDLNNTKMRKKDKQQRQRPVSAADFRDTSSRRQLKASIS
QPDLMVAVQNADVTDSGNGMRKFDSLDGQSFSNEVNTMSSKASLSTPDLS
MKQSSSSSSLSVKQLPRILSFRKQKPENGQKKKKRRNSRPNVSPPRSPAP
VPPSPTLDAKDSPTINIEPNFEPFSPYDIIPSPSSDHCDGKPVESPYEVI
DKFRFSGNQSNTLSETSSASQSRYAADGPSTLKEECSFENALQDSRLGNH
LGHLDEKPPPPPPRPPSLQSSPLLRRNLEIGIIETDTDERPGLKKRGSSL
LSLNFPPPPGINYDDEKSSPIATSSVENSLDFSDEGLRTPEMSQERKRTL
SLRDKADPKLQPFQVPNSYQGHLSPGNGVRGRPVSPRDIHGNYSNEDDDI
SDWGSEFSNSVVNFETNNKGTSRYASEHRANLFEVSTKVRSHSKEPPTNV
TNPKTKNLDRKKLFSINSNKQRSTSSNGTDVEMRPPTTNKEKRDPYPMAT
SEQKITEGEIPRSKSNPIPKPPRRGATHHIPNEKKPDPSYENIQTYQHQD
QPKVERSSSIIGRPVPPIPIEDTEEFRMNNTSLTDDELNQLYASVDLVKK
KADRLKSSGSSNSEESGGRFTVHTTLDENGQVKEGVFKVKLVRESGKTLG
FVITGGRDTPIEKVLIKQVEDQSLASTCSIPLKAGDELLEVNGQDVTEFT
HFEVLNTLQDSPPLVKLTIFRSSNGNQSLLQQQSTDTHIVKDIASKLDSQ
SILASFKGTGQHSKESEIISINKRRLSNSTKPQLTVDSFDSLMDGEDKIN
RITKTPPLLPKSLQNTPNKKNAKNTPTRPRGRTSSVSSTNINVSVTSPMK
ATTPLKMTTPPKTNDGLEWLEIDLYKQPGRGLGIAVTGGPKHIVKDGIRV
KRLIPDSIASLDNRLRKDDLICTINGRQLKGMTQGDALNFLKDIPKVINL
GVKRGSVPSNDVLLSPASVRPKSAPHSDKGDTVRRSRPQTKEPPQRRSRS
ETRNVETPKETPKKRPSSVSRLSRLFRGSSESINSLGKEDKQEKQSSKSR
KRSSSKRKNEPALLTIIFDKTDKNAFDFTLAGGANTIYGDQPVLVESVRR
GSELSKSLRINDELISIQGIDVRRFPVNKTVELLSRLPLGRVCVVVQRKP Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001478 | PDZ |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 411..431 |
| None | No IPR available | GENE3D | 2.30.42.10 | | coord: 883..997
e-value: 6.3E-6
score: 25.6 |
| None | No IPR available | GENE3D | 2.30.42.10 | | coord: 131..237
e-value: 1.3E-16
score: 59.9 |
| None | No IPR available | GENE3D | 2.30.42.10 | | coord: 2284..2400
e-value: 1.5E-11
score: 43.8 |
| None | No IPR available | GENE3D | 2.30.42.10 | | coord: 681..779
e-value: 8.8E-10
score: 37.9 |
| None | No IPR available | GENE3D | 2.30.42.10 | | coord: 1..103
e-value: 5.0E-21
score: 74.3 |
| None | No IPR available | GENE3D | 2.30.42.10 | | coord: 1885..1996
e-value: 1.0E-18
score: 67.0
coord: 491..606
e-value: 2.3E-15
score: 56.2 |
| None | No IPR available | GENE3D | 2.30.42.10 | | coord: 244..333
e-value: 6.7E-12
score: 44.9 |
| None | No IPR available | GENE3D | 2.30.42.10 | | coord: 2112..2212
e-value: 6.2E-15
score: 54.5 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1337..1445 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 815..880 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 2206..2308 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 973..1186 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 577..618 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 2052..2112 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1685..1821 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1254..1301 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 332..361 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1457..1652 |
| None | No IPR available | CDD | cd00992 | PDZ_signaling | coord: 248..328
e-value: 3.44254E-8
score: 52.5691 |
| None | No IPR available | CDD | cd00992 | PDZ_signaling | coord: 1886..1969
e-value: 1.68459E-16
score: 76.8366 |
| None | No IPR available | CDD | cd00992 | PDZ_signaling | coord: 2121..2203
e-value: 2.31567E-12
score: 64.8954 |
| None | No IPR available | CDD | cd00992 | PDZ_signaling | coord: 684..765
e-value: 9.45865E-7
score: 47.9467 |
| None | No IPR available | CDD | cd00992 | PDZ_signaling | coord: 7..89
e-value: 1.96898E-19
score: 85.311 |
| None | No IPR available | CDD | cd00992 | PDZ_signaling | coord: 495..578
e-value: 8.02388E-13
score: 66.051 |
| None | No IPR available | CDD | cd00992 | PDZ_signaling | coord: 2313..2397
e-value: 2.19606E-6
score: 46.7911 |
| None | No IPR available | CDD | cd00992 | PDZ_signaling | coord: 143..223
e-value: 6.39622E-16
score: 75.2958 |
| IPR001478 | PDZ domain | SMART | SM00228 | pdz_new | coord: 902..975
e-value: 0.0056
score: 25.9
coord: 503..581
e-value: 4.9E-13
score: 59.3
coord: 18..93
e-value: 6.4E-21
score: 85.5
coord: 2130..2206
e-value: 5.4E-13
score: 59.2
coord: 695..768
e-value: 1.6E-6
score: 37.7
coord: 151..226
e-value: 4.1E-16
score: 69.5
coord: 2324..2400
e-value: 6.8E-5
score: 32.3
coord: 258..331
e-value: 1.0E-6
score: 38.3
coord: 1897..1973
e-value: 2.7E-12
score: 56.8 |
| IPR001478 | PDZ domain | PFAM | PF00595 | PDZ | coord: 10..89
e-value: 2.0E-16
score: 60.0
coord: 149..222
e-value: 1.8E-10
score: 40.9
coord: 495..575
e-value: 1.9E-10
score: 40.8
coord: 2122..2202
e-value: 3.7E-10
score: 39.9
coord: 1889..1969
e-value: 4.7E-10
score: 39.6 |
| IPR001478 | PDZ domain | PROSITE | PS50106 | PDZ | coord: 494..581
score: 17.189 |
| IPR001478 | PDZ domain | PROSITE | PS50106 | PDZ | coord: 2315..2384
score: 10.637 |
| IPR001478 | PDZ domain | PROSITE | PS50106 | PDZ | coord: 892..977
score: 9.029 |
| IPR001478 | PDZ domain | PROSITE | PS50106 | PDZ | coord: 249..317
score: 11.079 |
| IPR001478 | PDZ domain | PROSITE | PS50106 | PDZ | coord: 1888..1973
score: 18.255 |
| IPR001478 | PDZ domain | PROSITE | PS50106 | PDZ | coord: 2121..2206
score: 17.692 |
| IPR001478 | PDZ domain | PROSITE | PS50106 | PDZ | coord: 141..212
score: 17.069 |
| IPR001478 | PDZ domain | PROSITE | PS50106 | PDZ | coord: 686..768
score: 11.119 |
| IPR001478 | PDZ domain | PROSITE | PS50106 | PDZ | coord: 9..93
score: 19.963 |
| IPR001478 | PDZ domain | SUPERFAMILY | 50156 | PDZ domain-like | coord: 130..223 |
| IPR001478 | PDZ domain | SUPERFAMILY | 50156 | PDZ domain-like | coord: 491..582 |
| IPR001478 | PDZ domain | SUPERFAMILY | 50156 | PDZ domain-like | coord: 225..332 |
| IPR001478 | PDZ domain | SUPERFAMILY | 50156 | PDZ domain-like | coord: 2105..2212 |
| IPR001478 | PDZ domain | SUPERFAMILY | 50156 | PDZ domain-like | coord: 1884..1973 |
| IPR001478 | PDZ domain | SUPERFAMILY | 50156 | PDZ domain-like | coord: 2310..2399 |
| IPR001478 | PDZ domain | SUPERFAMILY | 50156 | PDZ domain-like | coord: 7..92 |
| IPR001478 | PDZ domain | SUPERFAMILY | 50156 | PDZ domain-like | coord: 865..971 |
| IPR001478 | PDZ domain | SUPERFAMILY | 50156 | PDZ domain-like | coord: 677..771 |
Blast
BLAST of TCONS_00001945-protein vs. Swiss-Prot (Human)
Match: MPDZ (Multiple PDZ domain protein OS=Homo sapiens GN=MPDZ PE=1 SV=2) HSP 1 Score: 120.939 bits (302), Expect = 5.791e-27 Identity = 105/329 (31.91%), Postives = 160/329 (48.63%), Query Frame = 0
Query: 1 MKEKQDVLKLHLLKEKGKGLGIQLT--KNTDTKKKGIFISHLLEDSVAEHDGRLQIGDEILFINGQSL-LTLGHKEAVQLLHSASNPVQLVISR----KLVSEKRQSSRKPSKSDVSPELFENNNNIFIGDVESPRLYTPTSEHHTKEIILINGRDGKKLGFSMAGGAEYGSPLVVKNILAGGIASLDGRLRIGDHLLKVNDIPLDNFKYNEAVSLFKSLKQGQIKLLVK--TIRTRRSS-------NSSNDSTPRDLIDGA--------NIDV-VIKKVPGKGLGV-GFGQSSR---SGIFIKYLAKGSLAARKSLLQLKDQVVALNG 300
M + + V LLK GLG + ++ + + GIF+ + E SVA DGRL+ D+IL INGQ+L T+ H++A+ +L A + VQLVI+R +LVS SR PS + ++N P H + I L+N DG LGF + GG G ++VK IL GG+A GRL GDH+LK+ D L + + + ++KL++ I R + +SS STP +D + DV + K V G G+ + G+ + SGIF+K + K S +Q+ DQ++A++G
Sbjct: 129 MAQGRHVEVFELLKPPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQKAKDTVQLVIARGSLPQLVSPI--VSRSPSAAST----ISAHSN-------------PVHWQHMETIELVN--DGSGLGFGIIGGKATG--VIVKTILPGGVADQHGRLCSGDHILKIGDTDLAGMSSEQVAQVLRQCGN-RVKLMIARGAIEERTAPTALGITLSSSPTSTPELRVDASTQKGEESETFDVELTKNVQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDG 433
The following BLAST results are available for this feature:
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