TCONS_00001798-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00001798-protein
Unique NameTCONS_00001798-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length313

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00001798-protein ID=TCONS_00001798-protein|Name=TCONS_00001798-protein|organism=Clytia hemisphaerica|type=polypeptide|length=313bp
MASKKSNTSSFSAKLINGGIAGSIGTCCVFPLDLAKTRIQDQRTFSKTTG
QAATRLYKNVFHCMYIVGKTEGVRGLYKGLGINLFLVNPEKAIKLAVNDQ
CRQHLGSKQGSMLPLRYEAMAGGLAGMCQIFITTPMEFLKIQMQVAGRNA
ESAQTSAVKVAVNLMRQRGIAGIYKGTGATFIRDVPFSCVYFPLFSYLNS
LGYKDGRKPHPVHSLASGLGSGVFSAVLVTPMDVVKTRLQVLKRMEGEPI
YNGWSDAVSKIYRNEGLSAFFKGAITRAIVVAPLFGIAQMVYFVGFAETI
MERASQQRIKDFS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_000965XLOC_000965Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00001798TCONS_00001798Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002067Mit_carrier
IPR023395Mt_carrier_dom
IPR018108Mitochondrial_sb/sol_carrier
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002067Mitochondrial carrier proteinPRINTSPR00926MITOCARRIERcoord: 27..41
score: 27.76
coord: 128..146
score: 10.09
coord: 174..192
score: 24.42
coord: 14..27
score: 24.71
coord: 218..240
score: 23.38
coord: 79..99
score: 28.73
IPR023395Mitochondrial carrier domainGENE3D1.50.40.10coord: 5..295
e-value: 1.1E-80
score: 270.0
IPR023395Mitochondrial carrier domainSUPERFAMILY103506Mitochondrial carriercoord: 9..292
IPR018108Mitochondrial substrate/solute carrierPFAMPF00153Mito_carrcoord: 117..203
e-value: 3.1E-18
score: 65.4
coord: 210..292
e-value: 1.1E-18
score: 66.9
coord: 9..107
e-value: 5.5E-24
score: 83.8
IPR018108Mitochondrial substrate/solute carrierPROSITEPS50920SOLCARcoord: 209..298
score: 18.866
IPR018108Mitochondrial substrate/solute carrierPROSITEPS50920SOLCARcoord: 113..201
score: 18.158
IPR018108Mitochondrial substrate/solute carrierPROSITEPS50920SOLCARcoord: 9..104
score: 23.865

Blast
[Close]
BLAST of TCONS_00001798-protein vs. Swiss-Prot (Human)
Match: GHC2 (Mitochondrial glutamate carrier 2 OS=Homo sapiens GN=SLC25A18 PE=1 SV=1)

HSP 1 Score: 275.404 bits (703), Expect = 9.560e-92
Identity = 150/316 (47.47%), Postives = 200/316 (63.29%), Query Frame = 0 
Query:   10 SFSAKLINGGIAGSIGTCCVFPLDLAKTRIQDQRTFSKTTGQAATRLYKNVFHCMYIVGKTEGVRGLYKGLGINLFLVNPEKAIKLAVNDQCRQHLGSKQGSMLPLRYEAMAGGLAGMCQIFITTPMEFLKIQMQVAGRNAESAQ----------------------TSAVKVAVNLMRQRGIAGIYKGTGATFIRDVPFSCVYFPLFSYLNSLGYKD-GRKPHPVHSLASGLGSGVFSAVLVTPMDVVKTRLQVLKRMEGEPIYNGWSDAVSKIYRNEGLSAFFKGAITRAIVVAPLFGIAQMVYFVGFAETIME 302
            S +AKLINGG+AG +G  CVFP+DLAKTR+Q+Q       G+A   +YK +  C+    + EG  G+Y+G  +NL LV PEKAIKLA ND  R+ L  + G    L+ E +AG  AGMCQ+ +T PME LKIQ+Q AGR A   Q                       SA  +A  L+R +G+AG+Y+G GAT +RD+PFS +YFPLF+ LN+LG+ +   K    HS  SG  +G  +AV VTP+DV+KTR+Q LK+  GE +Y+G +D   K++  EG SAF KGA  RA+V+APLFGIAQ VYF+G  E I++
Sbjct:    7 SITAKLINGGVAGLVGVTCVFPIDLAKTRLQNQH------GKA---MYKGMIDCLMKTARAEGFFGMYRGAAVNLTLVTPEKAIKLAANDFFRRLL-MEDGMQRNLKMEMLAGCGAGMCQVVVTCPMEMLKIQLQDAGRLAVHHQGSASAPSTSRSYTTGSASTHRRPSATLIAWELLRTQGLAGLYRGLGATLLRDIPFSIIYFPLFANLNNLGFNELAGKASFAHSFVSGCVAGSIAAVAVTPLDVLKTRIQTLKKGLGEDMYSGITDCARKLWIQEGPSAFMKGAGCRALVIAPLFGIAQGVYFIGIGERILK 312
The following BLAST results are available for this feature:
BLAST of TCONS_00001798-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GHC29.560e-9247.47Mitochondrial glutamate carrier 2 OS=Homo sapiens ... [more]
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