TCONS_00001652-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00001652-protein
Unique NameTCONS_00001652-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length733

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00001652-protein ID=TCONS_00001652-protein|Name=TCONS_00001652-protein|organism=Clytia hemisphaerica|type=polypeptide|length=733bp
MENELGNNSRNASNGGINLNASENGNNGASRPLYTIPGILHYIQHEWARF
EMERAHWEVERAELQARIAFLQGERKGQENLKKDLIRRIKMLEFVLRQER
QKFHKLKYGTEMKLPESKEEKDEDNSNDVVNKNHELVFNYRQGRQLLRQY
LQEIGYTDKVLEMRSARVRSLLGVSTDDLPDNDNIHSVRENQRKLKSGNR
HSAADDAGDDKPSSSSQDATKEENNAQGEEGKQRIKSKDGDPENEALRKF
DFLRKEDDHGRGEGNDAEDQWKNIDSGKLQKRIQQFKNETKDRAMKSKRP
KKDALNKMLQPFAGEEEIPPPPQVPAPPVPNNMEEGMGDMDEGPLGDVAL
TSSGYSPRQMKPSLGNHSGVSPEGVDHTLGLGELAGLTVTDEAGPLSDNS
NRDEVRKTWGPKFTLRSHFDGVRSLCFHPYESALITASEDHTLKLWSLQK
STQGKKGSISDLEPVYTFRGHSGPVLSCVINSNGSVCYSGGLDSTIQCWN
IPSLNIDLFGPYDPNIFGETLVAHTDAVWDLAYQIDSDQLLSCSADGTCK
LWNPSIKSPLIQSYSCPDVGNPTSVTFINTDTGQIAASYTSEKCVLFDIE
TAKPVVTLSTDYNSGTIGSINKVVSHPTLPVLITAHEDRHIRFFDINSGK
EMHNMVAHLDAVTSLSIDSSGLYILSGSHDGSIRLWNMDNKTCIQEITAH
RSKFDESVFDVAFHPSQPYIASGGADALAKVFV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_000862XLOC_000862Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00001652TCONS_00001652Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR013258Striatin_N
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 54..81
NoneNo IPR availableGENE3D1.10.10.670coord: 688..732
e-value: 3.1E-13
score: 48.9
NoneNo IPR availableGENE3D2.40.50.140coord: 619..687
e-value: 9.5E-19
score: 66.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..27
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 335..354
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 174..280
NoneNo IPR availableCDDcd00200WD40coord: 411..732
e-value: 1.91155E-64
score: 216.432
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 540..554
score: 38.9
coord: 674..688
score: 36.27
coord: 434..448
score: 36.67
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 601..645
e-value: 0.34
score: 19.9
coord: 514..553
e-value: 1.6E-6
score: 37.7
coord: 408..447
e-value: 9.0E-8
score: 41.8
coord: 461..500
e-value: 9.7E-9
score: 45.0
coord: 690..733
e-value: 2.3E-4
score: 30.5
coord: 648..687
e-value: 2.5E-8
score: 43.7
coord: 557..598
e-value: 340.0
score: 1.0
IPR001680WD40 repeatPFAMPF00400WD40coord: 692..728
e-value: 0.0045
score: 17.7
coord: 520..553
e-value: 4.4E-5
score: 24.1
coord: 412..447
e-value: 1.1E-5
score: 25.9
coord: 650..687
e-value: 1.5E-6
score: 28.7
coord: 463..500
e-value: 0.0013
score: 19.4
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 655..696
score: 15.354
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 415..456
score: 13.717
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 521..553
score: 11.578
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 468..501
score: 10.709
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 97..618
e-value: 6.0E-38
score: 129.8
IPR013258Striatin, N-terminalPFAMPF08232Striatincoord: 35..160
e-value: 5.4E-42
score: 143.9
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 674..688
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 415..733
score: 37.94
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 408..732

Blast
[Close]
BLAST of TCONS_00001652-protein vs. Swiss-Prot (Human)
Match: STRN3 (Striatin-3 OS=Homo sapiens GN=STRN3 PE=1 SV=3)

HSP 1 Score: 674.47 bits (1739), Expect = 0.000e+0
Identity = 378/754 (50.13%), Postives = 491/754 (65.12%), Query Frame = 0 
Query:   30 SRPL-YTIPGILHYIQHEWARFEMERAHWEVERAELQARIAFLQGERKGQENLKKDLIRRIKMLEFVLRQERQKFHKLKYGTEM-----KLPESKEEKDEDNSNDVVNKNHELVFNYRQGRQLLRQYLQEIGYTDKVLEMRSARVRSLLGVSTDD---LPDNDNIHSV---------RENQRKLKSGNRHSAADDAGDDKPSSSSQDATKEENNAQGEEGKQRIKSKDG----------DPENE-ALRKFDFL-RKEDDHGRGEGNDAED--QWK-----------NIDSGKLQKRIQQFKNETKDRAMKSKRPKKDALNKMLQPFAGEEEIPPPPQVPAPPVPNNMEEGMGDMD-EGPLGDVALTSSGYSPRQMKPSLGNHSGV--SPEGVDHTLGLGELAGLTVTDEAGPLSD-NSNRDEVRKTWGPKFTLRSHFDGVRSLCFHPYESALITASEDHTLKLWSLQKSTQGKKGSISDLEPVYTFRGHSGPVLSCVINSNGSVCYSGGLDSTIQCWNIPSLNIDLFGPYDPNIFGETLVAHTDAVWDLAYQIDSDQLLSCSADGTCKLWNPSIKSPLIQSYSCPDV-GNPTSVTFINTDTGQIAASYTSEKCVLFDIETAKPVVTLSTDYNSGTIGS--INKVVSHPTLPVLITAHEDRHIRFFDINSGKEMHNMVAHLDAVTSLSIDSSGLYILSGSHDGSIRLWNMDNKTCIQEITAHRSKFDESVFDVAFHPSQPYIASGGADALAKVFV 733
            SRP  YTIPGILHYIQHEWARFEMERAHWEVERAELQARIAFLQGERKGQENLKKDL+RRIKMLE+ L+QER K+HKLKYGTE+     K+P  + E+ +D       +N +L   ++QGRQLLRQYLQE+GYTD +L++RS RVRSLLG+S  +     +  N+  +         +  + K  SG+     +   +   S   ++    E   +G++  +  K K G          DP+ E AL++FDFL   ED  G GE   + D  +W            ++D G + K  +Q+K E K +    KR  +  L  M+    G++E+P    +P+  +  +        D EG   + A       P    PS G  S +  S + +   LGLG+LA LTVT++A    D  +N+D  RKTW PK+TLRSHFDGVR+L FHP E  L+TASEDHTLKLW+LQK+   KK +  D+EP+YTFR H GPVLS  I+SNG  C+SGG+D+TIQ WN+PS ++D +  Y+PN+   TLV HTDAVW LAY    +QLLSCSADGT +LWNP  K P I +Y+     G PTSV FI  D   +  S+ +   V++D+ET++ +V LS+  +SG   +  IN+VVSHPTLPV ITAHEDRHI+FFD  +GK +H+MVAHLDAVTSL++D +G+Y++SGSHD SIRLWN+D+KTC+QEITAHR K DES++DVAFH S+ YIAS GADALAKVFV
Sbjct:   58 SRPQQYTIPGILHYIQHEWARFEMERAHWEVERAELQARIAFLQGERKGQENLKKDLVRRIKMLEYALKQERAKYHKLKYGTELNQGDLKMPTFESEETKDTEAPTAPQNSQLT--WKQGRQLLRQYLQEVGYTDTILDVRSQRVRSLLGLSNSEPNGSVETKNLEQILNGGESPKQKGQEIKRSSGDVLETFNFLENADDSDEDEENDMIEGIPEGKDKHRMNKHKIGNEGLAADLTDDPDTEEALKEFDFLVTAEDGEGAGEARSSGDGTEWDKDDLSPTAEVWDVDQGLISKLKEQYKKERKGKK-GVKRANRTKLYDMIADL-GDDELP---HIPSGIINQSRSASTRMTDHEGARAEEA------EPITF-PSGGGKSFIMGSDDVLLSVLGLGDLADLTVTNDADYSYDLPANKDAFRKTWNPKYTLRSHFDGVRALAFHPVEPVLVTASEDHTLKLWNLQKTVPAKKSASLDVEPIYTFRAHIGPVLSLAISSNGEQCFSGGIDATIQWWNMPSPSVDPYDTYEPNVLAGTLVGHTDAVWGLAYSGIKNQLLSCSADGTVRLWNPQEKLPCICTYNGDKKHGIPTSVDFIGCDPAHMVTSFNTGSAVIYDLETSQSLVILSSQVDSGLQSNNHINRVVSHPTLPVTITAHEDRHIKFFDNKTGKMIHSMVAHLDAVTSLAVDPNGIYLMSGSHDCSIRLWNLDSKTCVQEITAHRKKLDESIYDVAFHSSKAYIASAGADALAKVFV 797
The following BLAST results are available for this feature:
BLAST of TCONS_00001652-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
STRN30.000e+050.13Striatin-3 OS=Homo sapiens GN=STRN3 PE=1 SV=3[more]
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