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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00001608-protein ID=TCONS_00001608-protein|Name=TCONS_00001608-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1359bp
MLSTQSHTDDDQERGFRCQVLLGKLDNQLRERIYIKLSTRDPAKLFQFFQ
SHKTTIDKLRKKNVIKDEQYKLLLPTSGMVYLDQFDSTLLFFVTREFFGE
NMKDLIKIRNRIQHGGTKVSLPEFNAILRDAEPHLLQLGLSKAEFDDICN
IRIVDSKVKELMTKASFNYACLPPVANHFRRANLISNIHQAVYSQHHDDF
KFSVVISGIGGSGKSETAREYWQSYRNVYYEDIVCWINCNNFVNIEKSFT
EIANRCGINQIYNQNGSVKSLKELSNLVYDYFSVRQDVNKPRKVLFVLDN
VINQVALVDLIPQTKKEAPHFLITSQCSEWDQRFDVIKIGKFSNEEAEQF
LETNIHDVEARKDKEVNQKLLKSLSYLPLALQQAFSYINKNGLTVEMYLT
IFDKRQKELLSEGTQEIGNPSVYTTLSLTYNRLLQEGGQEVIDLLNKISY
LDGKDIRKGLLIKFVDDVFVLNKILSLLAKYSIIETTNTGTGFLENQINC
HELTQTFIKAYVPNVKEPVYQELANTFIEDMRNCRSQRQKMDGNYWYQHF
LFICEKDVENIFLMKFIDVQNDSIHLFETQGDMRRLCDCLKKIMEKLSHT
DGYERKDLYLKTKHNYANTLNNLSHYHDALRIFKEIETVRKETLGERHND
YLTTKHEIGCCLMNLSHYHDALSIFKEIETVRKDTLGERHNNYLSTKHNI
GHCLMNLSHYHEALRIFKEIETVQKDTLGERHNSYLTTKHNIGHCLMNLS
RYNDALSIFKEIETVRKDTLGERHNNYLSTKHNIGHCLMNLSHYHEALRI
FKEIETVRKDTLGERHNNYLSTKHNIGHCLMNLSHYHEALRIFKEIETVQ
KDTLGERHNSYLTTKHNIGHCLMNLSRYNDALSIFKEIETVRKDTLGERH
NNYLSTKHNIGHCLINLSRYNDALRIFKEIETVQKETLGERHNSYLATKH
NIGHCLMNLSHNHDALRIFKEIEIVQKDTLGERHNSYLTTKHNIGHSLMK
LSHYHDALRIFKEIETVRRDTLGERHNSYLATKHNIGHCLMNLTHYHEAL
RIFKEIETVRRDTLGERHNSYLTTKHNIGQCLMNLSHYHDALRIFKEIET
VQKETLGERQNNYLTTKHNIGQCLMNLSHYEDALSIFKEIEIVWNETIGQ
RHGNYLIGKIYIGECLKRMKAFDEALQIFESSKPLLSEVLGDHHDRYLRN
DFHIGHVLSMKGRFDDALEILESTQTKQFETFDKSHLEVLQTTNVIGRCL
AEKGLFDKAHDTLLQALEDGLQVLDKEHPIILSIRINLAHCLFGMKKIEE
AMDHLSEVEKISLQRFGDHHSIYLEAVEMKEQHEQKRKQKEEGVDVSPVT
ERMQSTKLE Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR019734 | Tetratricopeptide repeat | SMART | SM00028 | tpr_5 | coord: 652..685
e-value: 330.0
score: 1.6
coord: 904..937
e-value: 56.0
score: 8.4
coord: 778..811
e-value: 54.0
score: 8.5
coord: 1114..1147
e-value: 220.0
score: 3.1
coord: 1030..1063
e-value: 84.0
score: 6.8
coord: 988..1021
e-value: 92.0
score: 6.5
coord: 946..979
e-value: 430.0
score: 0.6
coord: 736..769
e-value: 45.0
score: 9.2
coord: 862..895
e-value: 45.0
score: 9.2
coord: 1156..1189
e-value: 220.0
score: 3.2
coord: 1072..1105
e-value: 100.0
score: 6.0
coord: 694..727
e-value: 47.0
score: 9.1
coord: 1282..1315
e-value: 27.0
score: 11.2
coord: 820..853
e-value: 47.0
score: 9.1 |
| None | No IPR available | GENE3D | 3.40.50.300 | | coord: 157..330
e-value: 2.9E-6
score: 26.6 |
| None | No IPR available | GENE3D | 1.20.1250.10 | | coord: 583..674
e-value: 6.0E-7
score: 28.9 |
| None | No IPR available | PFAM | PF13424 | TPR_12 | coord: 1031..1097
e-value: 2.2E-7
score: 31.0
coord: 1161..1223
e-value: 1.5E-7
score: 31.5
coord: 862..932
e-value: 1.3E-8
score: 35.0
coord: 695..767
e-value: 3.4E-7
score: 30.3 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1330..1359 |
| IPR011991 | Winged helix-turn-helix DNA-binding domain | GENE3D | 1.10.10.10 | | coord: 1045..1119
e-value: 5.0E-12
score: 45.4
coord: 1179..1258
e-value: 1.5E-6
score: 27.8
coord: 963..1044
e-value: 4.2E-11
score: 42.5
coord: 877..962
e-value: 2.1E-13
score: 49.9
coord: 1259..1347
e-value: 2.0E-11
score: 43.5
coord: 675..741
e-value: 3.5E-13
score: 49.1
coord: 803..876
e-value: 8.6E-14
score: 51.1 |
| IPR011990 | Tetratricopeptide-like helical domain | GENE3D | 1.25.40.10 | | coord: 742..802
e-value: 2.2E-6
score: 27.1 |
| IPR011990 | Tetratricopeptide-like helical domain | GENE3D | 1.25.40.10 | | coord: 1120..1178
e-value: 6.8E-4
score: 19.2 |
| IPR011990 | Tetratricopeptide-like helical domain | SUPERFAMILY | 48452 | TPR-like | coord: 1089..1312 |
| IPR011990 | Tetratricopeptide-like helical domain | SUPERFAMILY | 48452 | TPR-like | coord: 857..971 |
| IPR011990 | Tetratricopeptide-like helical domain | SUPERFAMILY | 48452 | TPR-like | coord: 668..888 |
| IPR011990 | Tetratricopeptide-like helical domain | SUPERFAMILY | 48452 | TPR-like | coord: 605..678 |
| IPR011990 | Tetratricopeptide-like helical domain | SUPERFAMILY | 48452 | TPR-like | coord: 983..1134 |
| IPR013026 | Tetratricopeptide repeat-containing domain | PROSITE | PS50293 | TPR_REGION | coord: 610..1105
score: 17.985 |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase | SUPERFAMILY | 52540 | P-loop containing nucleoside triphosphate hydrolases | coord: 164..433 |
Blast
The following BLAST results are available for this feature:
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