LIM and PET domains protein (polypeptide) - C. hemisphaerica

Overview
NameLIM and PET domains protein
Unique NameTCONS_00001467-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length567

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00001467-protein ID=TCONS_00001467-protein|Name=LIM and PET domains protein|organism=Clytia hemisphaerica|type=polypeptide|length=567bp
MAEWKLSVNSHPISTSTTSSDEEDFPEPPLLSEPILINSKAVRQRRENDA
TSDVVNVQSECSKLERHERRNQYLNCEPDEHGKGMDDIIDSYKKNRESLH
DTNENIVLHNGHESDQYMWVPAGLDANLIEDYMASLPRHKVPHFKNPDGI
SYHNKQLIQQIPLQDSNFENISTLEDDERQIFNGFKRERDSQMDSGKVIV
ADDNYVCRKCGKEIYQDDLLVRASALGEEAVWHPGCFECCKCNELLADLI
YCYKDGDIFCVRHFGEELKPRCCMCDELIFNGEYVRTDEKAYHAQHFVCH
ICECSLTGEQHLVDDGLPICIACYDDKFASVCHKCNKSIGVDEEDVIYDD
EHWHDYCLVCSLCNCRLSGTSFVIRDDNFLCSDCYQKTDDKRCKTCGKGF
EPGAKRLELKGEFWHDTCFVCDICKSPITSKKFIQHEGSQVCCPCFDQKF
AKRCAKCEEVLREGGVACGGAFYHRDCFQCEICNASIANQAFQQKDGFRY
CMPCYKQQYAKRCAGCDSYIVNGEYYTVDSDSWHKECFKCEVCHIVLQQQ
TFVQENGKVKLVCESCL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_000750XLOC_000750Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00001467TCONS_00001467Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001781Znf_LIM
IPR010442PET_domain
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001781Zinc finger, LIM-typeSMARTSM00132lim_4coord: 453..504
e-value: 4.1E-7
score: 39.6
coord: 392..445
e-value: 5.1E-11
score: 52.6
coord: 206..263
e-value: 4.6E-9
score: 46.1
coord: 271..323
e-value: 1.2E-8
score: 44.7
coord: 331..384
e-value: 6.2E-12
score: 55.6
coord: 512..566
e-value: 1.7E-9
score: 47.6
IPR001781Zinc finger, LIM-typePFAMPF00412LIMcoord: 454..508
e-value: 2.2E-7
score: 30.9
coord: 332..387
e-value: 9.6E-10
score: 38.5
coord: 513..566
e-value: 7.2E-10
score: 38.9
coord: 272..327
e-value: 8.9E-8
score: 32.1
coord: 393..449
e-value: 1.0E-8
score: 35.1
coord: 207..265
e-value: 1.6E-9
score: 37.7
IPR001781Zinc finger, LIM-typePROSITEPS00478LIM_DOMAIN_1coord: 513..547
IPR001781Zinc finger, LIM-typePROSITEPS00478LIM_DOMAIN_1coord: 332..367
IPR001781Zinc finger, LIM-typePROSITEPS00478LIM_DOMAIN_1coord: 393..428
IPR001781Zinc finger, LIM-typePROSITEPS50023LIM_DOMAIN_2coord: 453..510
score: 7.673
IPR001781Zinc finger, LIM-typePROSITEPS50023LIM_DOMAIN_2coord: 271..329
score: 7.168
IPR001781Zinc finger, LIM-typePROSITEPS50023LIM_DOMAIN_2coord: 330..390
score: 10.049
IPR001781Zinc finger, LIM-typePROSITEPS50023LIM_DOMAIN_2coord: 391..452
score: 12.395
IPR001781Zinc finger, LIM-typePROSITEPS50023LIM_DOMAIN_2coord: 205..270
score: 12.296
IPR001781Zinc finger, LIM-typePROSITEPS50023LIM_DOMAIN_2coord: 511..567
score: 11.098
NoneNo IPR availableGENE3D2.10.110.10coord: 510..567
e-value: 1.5E-12
score: 47.0
NoneNo IPR availableGENE3D2.10.110.10coord: 334..388
e-value: 2.2E-14
score: 52.6
coord: 191..270
e-value: 7.5E-14
score: 50.9
NoneNo IPR availableGENE3D2.10.110.10coord: 452..509
e-value: 9.2E-13
score: 47.5
NoneNo IPR availableGENE3D2.10.110.10coord: 271..333
e-value: 5.6E-15
score: 55.0
NoneNo IPR availableGENE3D2.10.110.10coord: 389..451
e-value: 2.8E-15
score: 55.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..37
NoneNo IPR availableCDDcd08368LIMcoord: 513..566
e-value: 2.82283E-7
score: 46.9271
NoneNo IPR availableCDDcd09345LIM2_FHLcoord: 393..446
e-value: 2.86055E-18
score: 78.4879
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 479..543
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 239..302
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 360..425
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 421..484
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 299..364
IPR010442PET domainPFAMPF06297PETcoord: 116..198
e-value: 2.0E-15
score: 56.7
IPR010442PET domainPROSITEPS51303PETcoord: 98..206
score: 12.675

Blast
[Close]
BLAST of LIM and PET domains protein vs. Swiss-Prot (Human)
Match: FHL5 (Four and a half LIM domains protein 5 OS=Homo sapiens GN=FHL5 PE=1 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 3.359e-62
Identity = 92/269 (34.20%), Postives = 146/269 (54.28%), Query Frame = 0 
Query:  294 AQHFVCHICECSLTGEQHLVDDGLPICIACYDDKFASVCHKCNKSIGVDEEDVIYDDEHWHDYCLVCSLCNCRLSGTSFVIRDDNFLCSDCYQKTDDKRCKTCGKGFEPGAKRLELKGEFWHDTCFVCDICKSPITSKKFIQHEGSQVCCPCFDQKFAKRCAKCEEVLREGGVACGGAFYHRDCFQCEICNASIANQAFQQKDGFRYCMPCYKQQYAKRCAGCD---SYIVNGEYYTVDSDSWHKECFKCEVCHIVLQQQTFVQENGKV 559
              HF C  C  SL G+++++ D  P C+ CYD  F++ C +C K I  D +D+ Y D HWH+ C  C+ CN  L    F  +D+  LC++CY      +C  C +   PG++++E KG +WH+TCFVC+ C+ PI +K  I  E    C PCF+++FA  C  C++V+  GG+      +H++CF C  C   +  + F  +D + +C+ CY   YA +C  C    S +   ++       WH ECF C  C + L  + F+ +N ++
Sbjct:    3 TAHFYCQYCTASLLGKKYVLKDDSPYCVTCYDRVFSNYCEECKKPIESDSKDLCYKDRHWHEGCFKCTKCNHSLVEKPFAAKDERLLCTECYSNECSSKCFHCKRTIMPGSRKMEFKGNYWHETCFVCENCRQPIGTKPLISKESGNYCVPCFEKEFAHYCNFCKKVITSGGITFCDQLWHKECFLCSGCRKDLCEEQFMSRDDYPFCVDCYNHLYANKCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEI 271

HSP 2 Score: 96.2857 bits (238), Expect = 3.984e-22
Identity = 62/214 (28.97%), Postives = 89/214 (41.59%), Query Frame = 0 
Query:  232 WHPGCFECCKCNELLADLIYCYKDGDIFCVRHFGEELKPRCCMCDELIFNGEY-VRTDEKAYHAQHFVCHICECSLTGEQHLVDDGLPICIACYDDKFASVCHKCNKSIGVDEEDVIYDDEHWHDYCLVCSLCNCRLSGTSFVIRDDNFLCSDCYQKTDDKRCKTCGKGFE--PGAKRLELKGEFWHDTCFVCDICKSPITSKKFIQHEGSQVC 442
            WH GCF+C KCN  L +  +  KD  + C   +  E   +C  C   I  G   +      +H   FVC  C   +  +  +  +    C+ C++ +FA  C+ C K I      + + D+ WH  C +CS C   L    F+ RDD   C DCY      +C  C K      GAK +  +   WH  CF C  C   +  K F+       C
Sbjct:   62 WHEGCFKCTKCNHSLVEKPFAAKDERLLCTECYSNECSSKCFHCKRTIMPGSRKMEFKGNYWHETCFVCENCRQPIGTKPLISKESGNYCVPCFEKEFAHYCNFCKKVI--TSGGITFCDQLWHKECFLCSGCRKDLCEEQFMSRDDYPFCVDCYNHLYANKCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFC 273

HSP 3 Score: 86.6557 bits (213), Expect = 7.578e-19
Identity = 63/276 (22.83%), Postives = 113/276 (40.94%), Query Frame = 0 
Query:  237 FECCKCNELLADLIYCYKDGDIFCVRHFGEELKPRCCMCDELI-FNGEYVRTDEKAYHAQHFVCHICECSLTGEQHLVDDGLPICIACYDDKFASVCHKCNKSIGVDEEDVIYDDEHWHDYCLVCSLCNCRLSGTSFVIRDDNFLCSDCYQKTDDKRCKTCGKGFEPGAKRLELKGEFWHDTCFVCDICKSPITSKKFIQHEGSQVCCPCFDQKFAKRCAKCEEVLREGGVACGGAF-------YHRDCFQCEICNASIANQAFQQKDGFRYCMPC 504
            F C  C   L    Y  KD   +CV  +       C  C + I  + + +   ++ +H   F C  C  SL  +     D   +C  CY ++ +S C  C ++I      + +   +WH+ C VC  C   +     + ++    C  C++K     C  C K    G   +    + WH  CF+C  C+  +  ++F+  +    C  C++  +A +C  C + +   G+  G  F       +H +CF C  C+ S+  + F  ++   +C  C
Sbjct:    6 FYCQYCTASLLGKKYVLKDDSPYCVTCYDRVFSNYCEECKKPIESDSKDLCYKDRHWHEGCFKCTKCNHSLVEKPFAAKDERLLCTECYSNECSSKCFHCKRTIMPGSRKMEFKGNYWHETCFVCENCRQPIGTKPLISKESGNYCVPCFEKEFAHYCNFCKKVITSGG--ITFCDQLWHKECFLCSGCRKDLCEEQFMSRDDYPFCVDCYNHLYANKCVACSKPI--SGLT-GAKFICFQDSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKC 276
The following BLAST results are available for this feature:
BLAST of LIM and PET domains protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FHL53.359e-6234.20Four and a half LIM domains protein 5 OS=Homo sapi... [more]
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