TCONS_00000790-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00000790-protein
Unique NameTCONS_00000790-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1364

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00000790-protein ID=TCONS_00000790-protein|Name=TCONS_00000790-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1364bp
MEDSPSKKRRKATFKEVGPSLSKDELIRRLKNAAQGLRNVDQGEQTEDFD
GFTASVASPFIFHHKDKDVKSFAACCFADILRIYAPEPPYNEDQLKDIFH
LIISQLKGLENVNAPTYKRNFYILESLALVKTFNVCMELEATDIMHNMFK
LFFSLISEQHDVRVKTFMLDVMAPIIQEEDSLPSEILETILLQLVSPRKT
KKPQSYQLACDLLDRCSSSIEPYMQLFFNNALVLNGEVHKDLNGHLYDLM
FELFKVNRTVLLSVLPQLEFKVKGNDETERIDAVKLLGKMFASEDCTLAQ
TNKQLWNCYIGRFCDISSEIRIECIKMSKAFLTSNIPLLKSDITEQISSR
LQDMDEKVRLEALLIVYEAATDDFAALDEKLLEDLKERMRDKKWSIRREA
ITCIGKIYKKLSSSSKTKPLLRKIDWAPSKILHQYMITNMDDRLCIERVL
HGCLVPVTLNIEERMERLFHVYTSLDDMGTILFDNMLQQRARINKDFTDL
LTAIPDEEIDDREKLIHRLTIMIARALPDPIKTQEHLKKLIVLLSDKTTY
KLFSESTDLKQDCTKIIKCVSEIVKKLSGKHPIIDTVKCLLDRACPMLVD
QTSFVSLIRKMKNYFEGMADDEDDDLSEDELALKAKKCLKLIQVLVKVRP
SIFQTKQAYETFLVFLKHNDPEIVQQSLNCLRHVLANIEEVDKSLSACFK
PVLNKLVVTGSPKQSKYAVRCLLAMMKDSVVSLERLFTTLVDSLDEDETC
YKLQTTLSALGEMAILAPEVFETKHKMIIRDFVVKKILVIDREKTSRKKE
PDDEWGDESKVSEETTMKIEAIKLLVKWLLGLDSARTGDNALPVLRLLCT
IINNDGDLSGDGKISAINRSRLRLKAGSGLLKLAQQTKYTDQITVEQYHQ
VALIMQDSCCEVRDFFTTKLHKGLETLRLPPSYMAIYALAAVDPSRERKQ
KVKQMIVKNSQTRRDYTKQHSSVASKPYAVLPEYSLPYLVHLLAHHPDFN
HKDNESLLECKEYLWYFLEPILGSKAENYSFLKKLLENIKRTKDALAGDD
QTVNEKLYAVCDLAIACIMQKTQTFTLKEFPGNLVLPKKLFIAEKNSAAN
SKSYLPKNFIFSPKKIKSTATANETKNVAVNQQKKSGKRPAKRPNLEEVV
SSSDDDTPLSTPAKKRRAAAPNSKSKSSSKKKDESSTKKKTKVVSSNVQA
AKRNLNGSPKKSAASPKKVTKTSPSKKDTKKSKENSSPRKVAKSIPKRAS
PKKRVTSPRKNGSTKQAKIDSFMNGHKSSSSEDEDEDSIVTASEESSQYT
AINDERPARKRVTPSPSPSPKKNRRNTSKINSSPVKTLKERTVQEDEKPT
PKLKIKRKPRATRR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_000484XLOC_000484Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00000790TCONS_00000790Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 55..250
e-value: 1.2E-7
score: 30.0
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 257..1067
e-value: 9.1E-26
score: 89.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1130..1364
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 64..412
coord: 529..779

Blast
BLAST of TCONS_00000790-protein vs. Swiss-Prot (Human)
Match: PDS5B (Sister chromatid cohesion protein PDS5 homolog B OS=Homo sapiens GN=PDS5B PE=1 SV=1)

HSP 1 Score: 818.535 bits (2113), Expect = 0.000e+0
Identity = 511/1398 (36.55%), Postives = 776/1398 (55.51%), Query Frame = 0
Query:   15 KEVGPSLSKDELIRRLKNAAQGLRNVDQG--EQTEDFDGFTASVASPFIFHHKDKDVKSFAACCFADILRIYAPEPPYNE-DQLKDIFHLIISQLKGLENVNAPTYKRNFYILESLALVKTFNVCMELE-ATDIMHNMFKLFFSLISEQHDVRVKTFMLDVMAPIIQEEDSLPSEILETILLQLVSPRKTKKPQSYQLACDLLDRCSSSIEPYMQLFFNNALVLNGEVHKDLNGHLYDLMFELFKVNRTVLLSVLPQLEFKVKGNDETERIDAVKLLGKMFASEDCTLAQTNKQLWNCYIGRFCDISSEIRIECIKMSKAFLTSNIPLLKSDITEQISSRLQDMDEKVRLEALLIVYEAATDDFAALDEKLLEDLKERMRDKKWSIRREAITCIGKIYKKLS-SSSKTKPLLRKIDWAPSKILHQYMITNMDDRLCIERVLHGCLVPVTLNIEERMERLFHVYTSLDDMGTILFDNMLQQRARINKDFTDLLTAIPDEEIDDREKLIHRLTIMIARALPDPIKTQEHLKKLI-VLLSDKTTYKLFSESTDLKQDCTKIIKCVSEIVKKLSG----KHPIIDTVKCLLDRACPMLVDQTSFVSLIRKMKNYFEGMADDEDDDLSEDELALKAKKCLKLIQVLVKVRPSIFQTKQAYETFLVFLKHNDPEIVQQSLNCLRHVLANIEEVDKSLSACFKPVLNKLVVTGSPKQSKYAVRCLLAMMKDSVVSLERLFTTLVDSLDEDETCYKLQTTLSALGEMAILAPEVFETKHKMIIRDFVVKKILVIDR---EKTSRKKEPDDEWGDESKVSEETTMKIEAIKLLVKWLLGL--DSARTGDNALPVLRLLCTIINNDGDLSGDGKISAINRSRLRLKAGSGLLKLAQQTKYTDQITVEQYHQVALIMQDSCCEVRDFFTTKLHKGLETLRLPPSYMAIYALAAVDPSRERKQKVKQMIVKNSQTRRDYTKQHSSVASKPYAVLPEYSLPYLVHLLAHHPDF-NHKDNESLLECKEYLWYFLEPILGSKAEN--YSFLKKLLENIKRTKDALAGDDQTVNEKLYAVCDLAIACIMQKTQTFTLKEFPGNLVLPKKLFIAEKNSAANSKSYLPKNF--IFSPKKIKST---ATANETKNVAVNQ-QKKSGK-----------------RPAKRPNLEEVVSSSDDDTPLSTPAKKRRAAAPNSKSKSSSKKKDESSTKKKTKVVSSNVQAAKRNLN-----GSPKKSAASPKKVTKTSPS-----------KKDT-----------KKSKENSSPRKVAKSIPKR-----------------ASPKKRVTSPRKNGSTKQAKIDSFMNGHKSSSSEDEDEDSIVTASEESSQYTAINDERPARKRVTPSPSPSPKKNRRNT 1327
            KE+   +SK+E++RRLK   +   ++DQ   E+ E +      +AS F   H DKDV+   ACC ADI RIYAPE PY   D+LKDIF  I  QLKGLE+  +P + R FY+LE++A VK++N+C ELE + +I   +++  FS+I+  H+ +V   M+D+M+ II E D++  E+L+T+L+ LV   K    Q+Y LA  LL R + +IEPY+  FFN  L+L      DL+ H++DL+ EL+ ++  +LLSVLPQLEFK+K ND  ER+  VKLL KMF ++D  LA  NK LW CY+GRF DI   IR+EC+K +   L  N P L  D+TE +  R  D +E +R + ++ +  AA  D   +++ LL  ++ER  DK+W +R+EA+  + +IYKK +  S+  K   ++I W   K+LH Y   ++DDRL +ER+    +VP  L   ERM+ L+++Y +LD       + M + +  +     DLL  I   + D   K I    ++I R LPDP K Q+ +KK   VL  D+   K           C +   CV EI KKL       +P ++ +K LL+R  P+ +D  S  +LI+++    +G ADDED+ +  D+ A++A   L+L++VL    P  F + + +E+ L  LK +D ++ + +L   ++  + IEE    + +   PVL+     G P+Q+KYA+ C+ A+         ++F  L  SLD     + L T L  +G +A+LAP+ F    K ++  F+VK +L+ DR   +KT++   PD+E      VS ET +KI+AIK++V+WLLG+  + +++G +    LRLL TI+++DGDL+  GKIS  + SRLRL AGS ++KLAQ+  Y + IT+EQY   AL + D C +VR  F  KLHKGL  LRLP  YMAI AL A DP +ER+   +Q +VKN   RR+Y KQH++V+ K  ++LPEY +PY +HLLAH PD+   +D E L + KE LW+ LE IL +K EN  ++F++K++ENIK+TKDA   DD  +NEKLY VCD+A+  IM K+ T++L E P + VLP + F     + +N+K+YLP      F+P K K+T      N+  + A  Q Q KS +                 R   R +  E+  S ++D  +S+P   +++   +      S + ++   +KKT V     +    +L        PK S  S K+    S S           K+D            KK K    P+ +    PK                   +P++     R++G+T+Q    S    H+ S    +  +S  +++ ES+Q T      P + R  PS +PSP + ++N 
Sbjct:   20 KEISDKISKEEMVRRLKMVVKTFMDMDQDSEEEKELYLNLALHLASDFFLKHPDKDVRLLVACCLADIFRIYAPEAPYTSPDKLKDIFMFITRQLKGLEDTKSPQFNRYFYLLENIAWVKSYNICFELEDSNEIFTQLYRTLFSVINNGHNQKVHMHMVDLMSSIICEGDTVSQELLDTVLVNLVPAHKNLNKQAYDLAKALLKRTAQAIEPYITNFFNQVLMLGKTSISDLSEHVFDLILELYNIDSHLLLSVLPQLEFKLKSNDNEERLQVVKLLAKMFGAKDSELASQNKPLWQCYLGRFNDIHVPIRLECVKFASHCLM-NHPDLAKDLTEYLKVRSHDPEEAIRHDVIVSIVTAAKKDILLVNDHLLNFVRERTLDKRWRVRKEAMMGLAQIYKKYALQSAAGKDAAKQIAWIKDKLLHIYYQNSIDDRLLVERIFAQYMVPHNLETTERMKCLYYLYATLDLNAVKALNEMWKCQNLLRHQVKDLLDLIKQPKTDASVKAIFSKVMVITRNLPDPGKAQDFMKKFTQVLEDDEKIRKQLEVLVSPTCSCKQAEGCVREITKKLGNPKQPTNPFLEMIKFLLERIAPVHIDTESISALIKQVNKSIDGTADDEDEGVPTDQ-AIRAG--LELLKVLSFTHPISFHSAETFESLLACLKMDDEKVAEAALQIFKNTGSKIEEDFPHIRSALLPVLHHKSKKGPPRQAKYAIHCIHAIFSSKETQFAQIFEPLHKSLDPSNLEH-LITPLVTIGHIALLAPDQFAAPLKSLVATFIVKDLLMNDRLPGKKTTKLWVPDEE------VSPETMVKIQAIKMMVRWLLGMKNNHSKSGTS---TLRLLTTILHSDGDLTEQGKISKPDMSRLRLAAGSAIVKLAQEPCYHEIITLEQYQLCALAINDECYQVRQVFAQKLHKGLSRLRLPLEYMAICALCAKDPVKERRAHARQCLVKNINVRREYLKQHAAVSEKLLSLLPEYVVPYTIHLLAHDPDYVKVQDIEQLKDVKECLWFVLE-ILMAKNENNSHAFIRKMVENIKQTKDAQGPDDAKMNEKLYTVCDVAMNIIMSKSTTYSL-ESPKDPVLPARFFTQPDKNFSNTKNYLPPEMKSFFTPGKPKTTNVLGAVNKPLSSAGKQSQTKSSRMETVSNASSSSNPSSPGRIKGRLDSSEMDHSENEDYTMSSPLPGKKSDKRDDSDLVRS-ELEKPRGRKKTPVTEQEEKLGMDDLTKLVQEQKPKGSQRSRKRGHTASESDEQQWPEEKRLKEDILENEDEQNSPPKKGKRGRPPKPLGGGTPKEEPTMKTSKKGSKKKSGPPAPEEEEEEERQSGNTEQK---SKSKQHRVSRRAQQRAESPESSAIESTQST------PQKGRGRPSKTPSPSQPKKNV 1391          
The following BLAST results are available for this feature:
BLAST of TCONS_00000790-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PDS5B0.000e+036.55Sister chromatid cohesion protein PDS5 homolog B O... [more]
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