TCONS_00000539-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00000539-protein
Unique Name	TCONS_00000539-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1832

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00000539-protein ID=TCONS_00000539-protein|Name=TCONS_00000539-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1832bp
MAGVEPQKLIVYNKHLPYSIKKEAERQLSEIKYNLSRAVILQEINPGLSI
WFDRFIIYLRLHGRNFTKEDHVLFINLFLNLMEMPEMGPSGIKGIAMLLQ
KLLKKEELLTRNDLTISWRPLYELVKSIKYSKLTPVGLERFPSKYVETIL
SVIKYARSYFPVEATQEMLLEFRPLLCPTDATKTNAALYLSLFLPTKIER
GTESKTYLLWLDELMEYWFHCTTSNVASVYLRLFSRLAEDNAGYLDWSKY
INRIFNFFFCKLSLPINGMRRGFDLKGTMSNSADFAKWFVYMMGGEQGTV
IFDKLEKLFVTLKSFYHPSNYDKHSSVLLGFLNALTSAFVMRLNHERYRK
PSWTVDIPEKSKITDAEIERYVNIVKEVALLSVYSKQGSLQAALTLQNLA
LLRADLVIPQLLQSTFEALETLVEPHQVTATLMCITSVARPLASGGGCFP
SAPTNILPLLRLVLPGLDPNDFRKSMCAFNFISAIVSLIPLVNCMPAVHA
GIEMSEVEKELCLASEQFEDLILQFFDRCFVLVENSTTENITQQDSTLDS
TASAQDSMLGRSLVSTVQVVFMQCSKALFEVALDALFRFVSSRVLEVDVA
GKLVSDMCRGAVRARPKETLKKMLPYITNRVINLATVEGVQNEEHVDPEL
LWYLEMLSELGRCNGMELLQYKEVLKEVIKLTIHMKCKKAYSRAAQLLKS
ILCSVSEVYITEWMSVHYGFDLPPMEHFYIRDWGKPYPLDELNPKWHSPS
QEEMQFADELLKEFLVPELELLKEIINGRVLTRDEIHQHLQIIATCLYGA
ANLLPNWTDKRVEGVALPTLVSRECILNTVNLSDVEKFVCCINRKDVVYQ
MHNFFNFMSKTHEDDTKSFRMLARIYDILVLHNGVHWSDFNLRWKSASAV
KKALADRLHGNKMHVRAVQIERVQLQHDMRVLDQHAAAFSVTDKVVIDDL
LFMSTSEYAEVRIHSQKILFGCLEAFDVATRYVLPKMLENIHPKAQVSHE
KLKGTLYILQYSRIVYMLIHDWKLMASSWIPIVQANQSEKPSIVKLLNYL
IRKIQSKFETMKIERKIGESASKVAKQLLETKSPEARTSLSDSPADDSVY
PSDKFMKMGQDKCTKKNEENLANYRRLEQDLSKLLQDTSIHWRCSEMCTK
LMNLLLNNEVKSCHEVINTFLNLLVNDSHLLRQYAIRGIMAVLYQYKPQF
AKRKLNYPEHNIDASPDVLMKLMPGDNRTDNQWLQYNDTNPINSQEDLER
FSFIDKTHWGYQTWPLELDILSNQADFYTKIRNKDCLCKEENLIVDTLNN
SEYLEKFIKFHSMEVKKGEDRFQHIHYTLFKGLFRNYGPSMFELFRPVVN
DLLAGNNESKHRLAIEIIAGMIRGSKHWNYESLTMFWDFMVPLLQNVFVS
NVMEETVKDWILALVVSTESHDPNRFHRLFTMLLNNPINGDGGSQGDTNR
LFIIRKTLGQQEWRLANVNHNMMKYLLPHLTHPFQNVREKVGSLVSYILL
FDLKYASHTPTLSPRCEMFVDYVYEDILKLYQITLGEIEAHEHQNEAMEI
DGVGVTEETKKLERMAKTVLSFLVNKSANFQPVNKALYRIIPLLLVLESR
EDDPELVGLCKYTFPALASKQLPDDLAQPAIQSIIQVCYNKKSWNLRRTG
LNYLMMMVFHNLYILDDEATRNQLQEMLIERLKDEQVEVREIASKLLSGL
VHFGYFSITEELLSTFHTMAKIKMKKKRHGIELTQAQTDKNVLALQVKHG
GVLGLSALVLAFPYDVCTWIPEVVIDLGNYLHEVPQISATAKKTLSEFRR
THHDNWHIHQQQFTDDQLSALTDLLISPSYYA

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_000326	XLOC_000326	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00000539	TCONS_00000539	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR021843	DUF3437
IPR032430	Blm10_mid
IPR011989	ARM-like
IPR016024	ARM-type_fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0005488	binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01

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POSITION

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 1117..1137
None	No IPR available	COILS	Coil	Coil	coord: 1665..1685
IPR021843	Protein of unknown function DUF3437	PFAM	PF11919	DUF3437	coord: 1748..1832 e-value: 1.9E-32 score: 111.0
IPR032430	Proteasome activator Blm10, mid region	PFAM	PF16507	BLM10_mid	coord: 305..804 e-value: 1.6E-88 score: 297.6
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 74..1826 e-value: 3.9E-39 score: 134.0
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 1579..1823 coord: 1339..1395 coord: 1119..1198 coord: 947..1060 coord: 1469..1503

Blast

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BLAST of TCONS_00000539-protein vs. Swiss-Prot (Human)
Match: PSME4 (Proteasome activator complex subunit 4 OS=Homo sapiens GN=PSME4 PE=1 SV=2)

HSP 1 Score: 1271.53 bits (3289), Expect = 0.000e+0
Identity = 716/1848 (38.74%), Postives = 1090/1848 (58.98%), Query Frame = 0

Query:    6 PQKLIVYNKHLPYSIKKEAER--QLSEIKYNLSRAVILQEINPGLSIWFDRFIIYLRLHGRNFTKEDHVLFINLFLNLMEMPEMGPSGIKGIAMLLQKLLKKEELLTRNDLTISWRPLYELVKSIKYSKLTPVGLERFPSKYVETILSVIKYARSYFPVEATQEMLLEFRPLLCPTDATKTNAALYLSLFLPTKIERGTESKTYLLWLDELMEYWFHCTT-SNVASVYLRLFSRLAEDNAGYLDWSKYINRIFNFFFCKLSLPINGMRRGFDLKGTMSNSADFAK---WFVYMMGGEQGTVIFDKLEKLFVTLKSFYHPSNYDKHSSVLLGFLNALTSAFVMRLNHERYRKPSWTVDIPEKSKITDAEIERYVNIVKEVALLSVYSKQGSLQAALTLQNLALLRADLVIPQLLQSTFEALETLVEPHQVTATLMCITSVARPLASGGGCFPSAPTNILPLLRLVLPGLDPNDFRKSMCAFNFISAIVSLIPLVNCMPAVHAGIEMSEVEKELCLASEQFEDLILQFFDRCFVLVENSTTENITQQDSTLDSTASAQDSMLGRSLVSTVQVVFMQCSKALFEVALDALFRFVSSRVLEVDVAGKLVSDMCRGAVRARPKETLKKMLPYITNRVINLATVEGVQNEEHVDPELLWYLEMLSELGRCNGMELLQYKEVLKEVIKLTIHMKCKKAYSRAAQLLKSILCSVSEVYITEWMSVHYGFDLPPMEHFYIRDWGKPYPLDELNPKWHSPSQEEMQFADELLKEFLVPELELLKEIINGRV-LTRDEIHQHLQIIATCLYGAANLLPNWTDKRVEGVALPTLVSRECILNTVNLSDVEKFVCCINRKDVVYQ-MHNFFNFMSKTHEDDTKSFRMLARIYDILVLHNGVHWSDFNLRWKSASAVKKALADRLHGNKMHVRAVQIERVQLQHDMRVLDQHAAAFSVTDKVVIDDLLFMSTSEYAEVRIHSQKILFGCLEAFDVATRYVLPKMLENIHPKAQ-VSHEKLKGTLYIL--QYSRIVYMLIHDWKLMASSWIPIV-----QANQSEKPSIVKLLNYLIRKIQSKFETMKIERKIGESASKVAKQLLETKSPEARTSLSDSPADDSVYPSDKFMKMGQDKCTKKNEENLANYRRLEQDLSKLLQDTSIHWRCSEMCTKLMNLLLNNEVKSCHEVINTFLNLLVNDSHLLRQYAIRGIMAVLYQYKPQFAKRKLNYPEHNIDASPDVLMKLMPGDNRTDNQWLQYNDTNPINSQEDLERFSFIDKTHWGYQTWPLELDILSNQADFYTKIRNKDCLCKEENLIVDTLNNSEYLEKFIKFHSMEVKKGEDRFQHIHYTLFKGLFRNYGPSMFELFRPVVNDLLAGNNESKHRLAIEIIAGMIRGSKHWNYESLTMFWDFMVPLLQNVFVSNVMEETVKDWILALVVSTESHDPNRFHRLFTMLLNNPINGDGGSQGDTNRLFIIRKTLGQQEWRLANVNHNMMKYLLPHLTHPFQNVREKVGSLVSYILLFDLKYASHTPTLSPRCEMFVDYVYEDILKLYQITLGEIEAHEHQNEAMEIDGVGVTEETKKLERMAKTVLSFLVNKSA-NFQPVNKALYRIIPLLLVLESREDD---PELVGLCKYTFPALASKQLPDDLAQPAIQSIIQVCYNKKSWNLRRTGLNYLMMMVFHNLYI-LDDEATRNQLQEMLIERLKDEQVEVREIASKLLSGLVHFGYFSITEELLSTFHTMAKIKMKKKRHGIELTQAQTDKNVLALQVKHGGVLGLSALVLAFPYDVCTWIPEVVIDLGNYLHEVPQISATAKKTLSEFRRTHHDNWHIHQQQFTDDQLSALTDLLISPSYYA 1832
            PQK IVYNK LPY+ + +AE   QL++IK NL RAV LQE+ PG   W  +   Y+RL+GR F+KEDHVLFI L   L+ +P++  S ++G A LL  LLKK+ELL+R DL + WRPLY++V+ I YSK   +GL  FP+     + +++K  R YFP +AT EML E+RPL+CP D T   A  Y  +FLPT +      K + LW DEL+  W             + LF+RLA DN GY+DW  Y+ +IF      L+LP+   +    +   ++N+ D      W   MMGG    ++   L  LF ++ SFYHPSN  +  + L+  L  L ++ V RL+ ERY+KPSW   +P+  K+TD ++  +V  + +  LL+++SK GSL+AA  LQNLAL+R +LVIP +L+ T+ ALETL EPHQ+TATL C+  VAR L SGG  FP  PT++LPLL   LPG+DPNDF K M  F FI+   +L+PLV+C   +    +++EVE+ELC A+ +FED +LQF DRCF L+E+ST E   ++  T     +  +S++   L ST   +  QCSK +F VAL  +F F +S + E  VAG++V+DMCR AV+  P+E+LK  +P+  + +  L   + V N+E +D ELLW L++LSE+ R +G +LL Y+E L ++++ T+H+ CK+ Y+ +  LL  +L S + +Y TE+ SV  GFD PP E+F I+DWGKP  L  L  +WH PS EE+ FA  LL  FL PEL  L+   +G++ ++RD+I Q L I+  CL G+ NLLP    + V  + +P++VS E    T   + +E  +   N ++V+   +    N +    EDDTKS  ++ +I   L+   G H  +F+ RWKS + VKK++ +RLHG K H+RA+ I+RV LQH++R L      +    + +I DLL +STS Y++VR  +Q+  F  L A++   R ++P +LE + P  Q V+ ++ KG LY L   +S +    +HDW  +  +W  IV     QA   EKPSIV+L + L  KI  ++ET+ ++  I +S  ++A+ L ++K+P            + +  S + +K G  +  +KN + L NY  L   L   ++  ++ W+   +   L++LLL ++       I  F+  L +D+ ++R+ AI  +  +L Q K    K  +N  E  I   P    +++ GD R DN WL Y+      ++++ E   F++KTHWGY TWP  + + +   +     R+++ + + E +I D  ++ +++E+ I F S+E +KG+D+F    + LFKG+FRN+  +   + +P +  L+A ++ES  R   EIIAG+IRGSKHW +E +   W+ + PLL+   +SN+  ET  DW   +  S ES DP + H LF +LL +P++G+GGS  D  RL++++  L QQEWR+  + H ++KYL P LT  ++NVRE++GS+++YI + D+   + TPT+SP    F   + E +  L  +        E QN  ME +G+G  +E  +  ++ KT+L +L+  +  +F        +++PL   +   E+D    EL    K    +L S+ L      P +  +++      SW+ R T L YL  MVF+NL+I L++E     ++ ++I  L+DEQ+EVRE+A+  LSGL+   + ++   +   F  + K K+ KKR     +   T  +   L  +H GVLGL A VL+ PYDV TW+P+++++L  +L++   I  T KKTLS FRRTHHDNW  H+QQFTDDQL  LTDLL+SP YYA
Sbjct:   28 PQKEIVYNKLLPYAERLDAESDLQLAQIKCNLGRAVQLQELWPGGLFWTRKLSTYIRLYGRKFSKEDHVLFIKLLYELVSIPKLEISMMQGFARLLINLLKKKELLSRADLELPWRPLYDMVERILYSKTEHLGLNWFPNSVENILKTLVKSCRPYFPADATAEMLEEWRPLMCPFDVTMQKAITYFEIFLPTSLPPELHHKGFKLWFDELIGLWVSVQNLPQWEGQLVNLFARLATDNIGYIDWDPYVPKIFTRILRSLNLPVGSSQ--VLVPRFLTNAYDIGHAVIWITAMMGGP-SKLVQKHLAGLFNSITSFYHPSNNGRWLNKLMKLLQRLPNSVVRRLHRERYKKPSWLTPVPDSHKLTDQDVTDFVQCIIQPVLLAMFSKTGSLEAAQALQNLALMRPELVIPPVLERTYPALETLTEPHQLTATLSCVIGVARSLVSGGRWFPEGPTHMLPLLMRALPGVDPNDFSKCMITFQFIATFSTLVPLVDCSSVLQERNDLTEVERELCSATAEFEDFVLQFMDRCFGLIESSTLEQTREETET--EKMTHLESLVELGLSSTFSTILTQCSKEIFMVALQKVFNFSTSHIFETRVAGRMVADMCRAAVKCCPEESLKLFVPHCCSVITQLTMNDDVLNDEELDKELLWNLQLLSEITRVDGRKLLLYREQLVKILQRTLHLTCKQGYTLSCNLLHHLLRSTTLIYPTEYCSVPGGFDKPPSEYFPIKDWGKPGDLWNLGIQWHVPSSEEVSFAFYLLDSFLQPELVKLQHCGDGKLEMSRDDILQSLTIVHNCLIGSGNLLPPLKGEPVTNL-VPSMVSLE---ETKLYTGLEYDLSRENHREVIATVIRKLLNHILDNSEDDTKSLFLIIKIIGDLLQFQGSHKHEFDSRWKSFNLVKKSMENRLHGKKQHIRALLIDRVMLQHELRTLTVEGCEYKKIHQDMIRDLLRLSTSSYSQVRNKAQQTFFAALGAYNFCCRDIIPLVLEFLRPDRQGVTQQQFKGALYCLLGNHSGVCLANLHDWDCIVQTWPAIVSSGLSQAMSLEKPSIVRLFDDLAEKIHRQYETIGLDFTIPKSCVEIAELLQQSKNPSI----------NQILLSPEKIKEGIKRQQEKNADALRNYENLVDTLLDGVEQRNLPWKFEHIGIGLLSLLLRDDRVLPLRAIRFFVENLNHDAIVVRKMAISAVAGILKQLKRTHKKLTINPCE--ISGCPKP-TQIIAGD-RPDNHWLHYDSKTIPRTKKEWESSCFVEKTHWGYYTWPKNMVVYAGVEEQPKLGRSREDMTEAEQIIFDHFSDPKFVEQLITFLSLEDRKGKDKFNPRRFCLFKGIFRNFDDAFLPVLKPHLEHLVADSHESTQRCVAEIIAGLIRGSKHWTFEKVEKLWELLCPLLRTA-LSNITVETYNDWGACIATSCESRDPRKLHWLFELLLESPLSGEGGSFVDACRLYVLQGGLAQQEWRVPELLHRLLKYLEPKLTQVYKNVRERIGSVLTYIFMIDVSLPNTTPTISPHVPEFTARILEKLKPLMDVD------EEIQNHVMEENGIGEEDERTQGIKLLKTILKWLMASAGRSFSTAVTEQLQLLPLFFKIAPVENDNSYDELKRDAKLCL-SLMSQGLLYPHQVPLVLQVLKQTARSSSWHARYTVLTYLQTMVFYNLFIFLNNEDAVKDIRWLVISLLEDEQLEVREMAATTLSGLLQCNFLTMDSPMQIHFEQLCKTKLPKKRKRDPGSVGDTIPSA-ELVKRHAGVLGLGACVLSSPYDVPTWMPQLLMNLSAHLNDPQPIEMTVKKTLSNFRRTHHDNWQEHKQQFTDDQLLVLTDLLVSPCYYA 1843

The following BLAST results are available for this feature:

BLAST of TCONS_00000539-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00000539-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1

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Match Name	E-value	Identity	Description
PSME4	0.000e+0	38.74	Proteasome activator complex subunit 4 OS=Homo sap...	[more]

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TCONS_00000539-protein (polypeptide) - C. hemisphaerica

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