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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00000480-protein ID=TCONS_00000480-protein|Name=TCONS_00000480-protein|organism=Clytia hemisphaerica|type=polypeptide|length=705bp
MEKTYMTPLVTKWKDAFGPTSSTMSIVVELLCYTTCYRQGGDSEKFARRA
IESLVKKLRKKADELENLVIAIKSKGRQPSKCVTIPRTLDGRLQVCERKG
FPHVIYSRLFRWPDIHKMELRHLDTCQFAFDLKYDVVCVNPYHYERISST
PSQSSVIDPAGFHHRGPRSQPPDLSSSTIKAQPLNRPHILTFNGGQTQTP
ILPLAVTYPPRMPCAADPFPVIVQHLLYHTNWYKEYKDGIDSNDNGFTRR
AIESLVKKLKKRYNELDALIAAIVSQGRIETKCATVQRTLDGRLQVGERK
DFPHVTYTRLWRWPNVHKLELCSIDSCLHGFDRKGGNICVNPYHYDRVKP
PELHTYPPSMAHAESKRLGSTSTSTTSSHNNFHHFFERKHPDADRMSIDD
KSSYSRRTNSPKRKSIEEVEHYENGSNRPPKEMKISSPVQIPHKARSISD
YSSSSKEELRGASSSFNKNLITCAFCSCSEQLPWFKGQFKSYGPLSKLAG
SPSANEIFRPYLETDTVSSRSGGGHSSPDPKEFNPSSDANSLPMHVGYFF
RSNIHSVVDYEEMIWAHKSCMDWSICTSKAESDNPLVLVGKALSQSCSFC
GRFGASLGCCVQDCNKYFHLPCALYSSTLALHKSMEIYCADHLKFVPESV
VCQKCENNEHVENFVTCSVCNSNFHASCKTPSIHLTGRRKLTFQCESCRS
CALCS Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005622 | intracellular |
| GO:0005667 | transcription factor complex |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
| GO:0007179 | transforming growth factor beta receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003700 | transcription factor activity, sequence-specific DNA binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| biological_process |
GO:0007179 |
transforming growth factor beta receptor signaling pathway |
| cellular_component |
GO:0005622 |
intracellular |
| cellular_component |
GO:0005667 |
transcription factor complex |
| molecular_function |
GO:0003700 |
transcription factor activity, sequence-specific DNA binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | COILS | Coil | Coil | coord: 48..75 |
| None | No IPR available | COILS | Coil | Coil | coord: 249..276 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 394..454 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 149..178 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 516..537 |
| None | No IPR available | CDD | cd10492 | MH1_SMAD_4 | coord: 22..149
e-value: 2.20375E-70
score: 226.18 |
| IPR001965 | Zinc finger, PHD-type | SMART | SM00249 | PHD_3 | coord: 596..643
e-value: 0.11
score: 21.6
coord: 651..699
e-value: 0.056
score: 22.6 |
| IPR003619 | MAD homology 1, Dwarfin-type | SMART | SM00523 | dwAneu5 | coord: 42..151
e-value: 2.0E-56
score: 203.4
coord: 243..352
e-value: 2.1E-41
score: 153.5 |
| IPR003619 | MAD homology 1, Dwarfin-type | PFAM | PF03165 | MH1 | coord: 48..147
e-value: 3.1E-37
score: 126.8
coord: 249..348
e-value: 2.2E-30
score: 104.8 |
| IPR013019 | MAD homology, MH1 | GENE3D | 3.90.520.10 | | coord: 19..171
e-value: 1.4E-44
score: 150.8
coord: 218..362
e-value: 5.1E-36
score: 123.0 |
| IPR013019 | MAD homology, MH1 | PROSITE | PS51075 | MH1 | coord: 25..153
score: 34.251 |
| IPR013019 | MAD homology, MH1 | PROSITE | PS51075 | MH1 | coord: 221..354
score: 30.181 |
| IPR013019 | MAD homology, MH1 | SUPERFAMILY | 56366 | SMAD MH1 domain | coord: 238..348 |
| IPR013019 | MAD homology, MH1 | SUPERFAMILY | 56366 | SMAD MH1 domain | coord: 28..147 |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type | GENE3D | 3.30.40.10 | | coord: 645..702
e-value: 4.5E-5
score: 22.6 |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type | GENE3D | 3.30.40.10 | | coord: 591..644
e-value: 0.14
score: 11.4 |
| IPR019786 | Zinc finger, PHD-type, conserved site | PROSITE | PS01359 | ZF_PHD_1 | coord: 652..698 |
| IPR011011 | Zinc finger, FYVE/PHD-type | SUPERFAMILY | 57903 | FYVE/PHD zinc finger | coord: 647..702 |
Blast
BLAST of TCONS_00000480-protein vs. Swiss-Prot (Human)
Match: SMAD4 (Mothers against decapentaplegic homolog 4 OS=Homo sapiens GN=SMAD4 PE=1 SV=1) HSP 1 Score: 167.548 bits (423), Expect = 2.022e-44 Identity = 89/133 (66.92%), Postives = 108/133 (81.20%), Query Frame = 0
Query: 19 PTSST--MSIVVELLCYTTCYRQGGDSEKFARRAIESLVKKLRKKADELENLVIAIKSKGRQPSKCVTIPRTLDGRLQVCERKGFPHVIYSRLFRWPDIHKMELRHLDTCQFAFDLKYDVVCVNPYHYERISS 149
PTS+ +SIV L+C+ RQGG+SE FA+RAIESLVKKL++K DEL++L+ AI + G PSKCVTI RTLDGRLQV RKGFPHVIY+RL+RWPD+HK EL+H+ CQ+AFDLK D VCVNPYHYER+ S
Sbjct: 10 PTSNDACLSIVHSLMCH----RQGGESETFAKRAIESLVKKLKEKKDELDSLITAITTNGAHPSKCVTIQRTLDGRLQVAGRKGFPHVIYARLWRWPDLHKNELKHVKYCQYAFDLKCDSVCVNPYHYERVVS 138 HSP 2 Score: 124.405 bits (311), Expect = 8.695e-30 Identity = 64/107 (59.81%), Postives = 80/107 (74.77%), Query Frame = 0
Query: 247 FTRRAIESLVKKLKKRYNELDALIAAIVSQGRIETKCATVQRTLDGRLQVGERKDFPHVTYTRLWRWPNVHKLELCSIDSCLHGFDRKGGNICVNPYHYDRVKPPEL 353
F +RAIESLVKKLK++ +ELD+LI AI + G +KC T+QRTLDGRLQV RK FPHV Y RLWRWP++HK EL + C + FD K ++CVNPYHY+RV P +
Sbjct: 35 FAKRAIESLVKKLKEKKDELDSLITAITTNGAHPSKCVTIQRTLDGRLQVAGRKGFPHVIYARLWRWPDLHKNELKHVKYCQYAFDLKCDSVCVNPYHYERVVSPGI 141
The following BLAST results are available for this feature:
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