TCONS_00000180-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00000180-protein
Unique Name	TCONS_00000180-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	935

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00000180-protein ID=TCONS_00000180-protein|Name=TCONS_00000180-protein|organism=Clytia hemisphaerica|type=polypeptide|length=935bp
MGHIHTYRSIDATLSLSYRYRKTSWLGLRFLRIIYAQKAPLMLHYLNVLT
AGPNLTMGYVVGKVFALILASAGIIHLLENTGDPWVDGDSNRQKLTYFEC
VYFMIVTLSTVGYGDFSCNTYLGRVFCMLIIIFGLGLFASYIPMIFDFIS
SHTKYDRKFKTTPGKKHVVVTGHITDETVSAFVQDFLHPDRAFNNTSVVF
LAPNHPTVVIQSILQRYFSKVSYFVGTIYKHHDCERVQMQEADAVIILCD
KKCTNPDAEDAGNITRVILVKKFYRHVRCIVQLMRKASKAHIYNCPQWKE
SNGDAIVCIDELKLGIMAQSCNAPGFSTLLANLFVMRENENKHYQDNWRE
TYLSGVSVEMYSTLLSDYFIGMSFPKAVEICFTKLNLLLIAVEVHHKDKG
EIFAINPSSSLRLTKGSRAFFISQDADDVSKARFYCDRCHTNHTSSKRML
PKCKCMSGSSSNVSLEGSFENLKKDHSTTNGKNHVTVSLDNPGYNNKVTM
NGKTLNKFNSSSMKKKTLPPLDYKNSKREMFDETGTFFWCPEKLLEDAIM
SLEVAEQEMFDGHVVILVISDVRAPSLGLQQLIQPLRASNQPYEDLKKII
ILGDDKFLAREWSTINTFPDVHIVTGSPYSRVDLRAVNVHTADMCILLSP
FKNVVFEQEEHEAMSDKEVIMVALNLRAMTFDNISKSTLTSPVPYDELPS
YKSNFNVQNSFDMLYSENALMAIGTCNLDTNGDTITGENIRMITELVYDS
NTLYLDDERQSQCSSEGIWMTQSYACGSVFTVSVLDFLASATYFNQDTLT
LVLNLVTGSVNPELDKILAEGKKPDGVLENESIAATRNRCRVDQLSLDDP
HFAAMGRINEYGDLFVKSIQEHNMLCLGLYRLHTNSSKTMSLNTRYVITF
PSRDMRLEPTDRVFVLMQFKEDKGDFYTSSEDSQM

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_000106	XLOC_000106	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00000180	TCONS_00000180	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003929	K_chnl_BK_asu
IPR013099	K_chnl_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0006813	potassium ion transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006813	potassium ion transport
cellular_component	GO:0016020	membrane

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01

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POSITION

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01449	BKCHANNELA	coord: 369..386 score: 53.7 coord: 240..260 score: 57.14 coord: 197..217 score: 23.81 coord: 319..334 score: 76.82
None	No IPR available	GENE3D	1.10.287.70		coord: 51..157 e-value: 1.1E-19 score: 69.5
None	No IPR available	GENE3D	3.40.50.720		coord: 159..305 e-value: 1.8E-13 score: 50.0 coord: 554..763 e-value: 4.3E-19 score: 68.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 473..493
None	No IPR available	SUPERFAMILY	81324	Voltage-gated potassium channels	coord: 30..172
IPR003929	Potassium channel, BK, alpha subunit	PFAM	PF03493	BK_channel_a	coord: 297..392 e-value: 2.4E-30 score: 104.5
IPR013099	Potassium channel domain	PFAM	PF07885	Ion_trans_2	coord: 66..149 e-value: 1.9E-16 score: 59.7

Blast

[Close]

BLAST of TCONS_00000180-protein vs. Swiss-Prot (Human)
Match: KCMA1 (Calcium-activated potassium channel subunit alpha-1 OS=Homo sapiens GN=KCNMA1 PE=1 SV=2)

HSP 1 Score: 666.381 bits (1718), Expect = 0.000e+0
Identity = 372/948 (39.24%), Postives = 539/948 (56.86%), Query Frame = 0

Query:   20 YRKTSWLGLRFLRIIYAQKAPLMLHYLNVLTAGPNLTMGYVVGKVFALILASAGIIHLLENTGDPWVDGDSNRQKLTYFECVYFMIVTLSTVGYGDFSCNTYLGRVFCMLIIIFGLGLFASYIPMIFDFISSHTKYDRKFKTTPGKKHVVVTGHITDETVSAFVQDFLHPDRAFNNTSVVFLAPNHPTVVIQSILQRYFSKVSYFVGTIYKHHDCERVQMQEADAVIILCDKKCTNPDAEDAGNITRVILVKKFYRHVRCIVQLMRKASKAHIYNCPQWKESNGDAIVCIDELKLGIMAQSCNAPGFSTLLANLFVMRENENKHYQDNWRETYLSGVSVEMYSTLLSDYFIGMSFPKAVEICFTKLNLLLIAVEVHHKDKGEIFAINPSSSLRLTKGSRAFFISQDADDVSKARFYCDRCHTNHTSSKRM------LPK---------------------CKCMSGSSSNVSLEGSFENLKKDHSTTN-GKNHVTVSL-----DNPGY--NNKVTMNGKTLNKFNSSSMKKKTLPPL-------DYKNSKREMFDETGTFFWCPEKLLEDAIMSLEVAEQEMFDGHVVILVISDVRAPSLGLQQLIQPLRASNQPYEDLKKIIILGDDKFLAREWSTINTFPDVHIVTGSPYSRVDLRAVNVHTADMCILLSPFKNVVFEQEEHEAMSDKEVIMVALNLRAMTFDNISKSTLTSPVPYDELPSYKSNFNVQNSFDMLYSENALMAIGTCNLDTNGDTITGENIRMITELVYDSNTLYLDDERQSQCSSEGIWMTQSYACGSVFTVSVLDFLASATYFNQDTLTLVLNLVTGSVNPELDKILAEGKKPDGVLENESIAATRNRCRVDQLSLDDPHFAAMGRINEYGDLFVKSIQEHNMLCLGLYRLHTNSSKTMSLNT-RYVITFPSRDMRLEPTDRVFVLMQFKEDKG 924
            Y   SWLGLRFLR +   +   +L +LN+L    ++ +  ++    +  L +AG IHL+EN+GDPW +   N Q LTY+ECVY ++VT+STVGYGD    T LGR+F +  I+ GL +FASY+P I + I +  KY   +    G+KH+VV GHIT E+VS F++DFLH DR   N  +VFL    P + ++++ +R+F++V ++ G++   HD  RV+++ ADA +IL +K C +PDAEDA NI RVI +K ++  +R I Q+++  +KAH+ N P W    GD  +C+ ELKLG +AQSC A G ST+LANLF MR +  K  +D W++ YL GVS EMY+  LS  F+G+SFP   E+CF KL LL+IA+E    ++     INP + L++ +G+  FFI+ DA +V +A FYC  CH + T  KR+       PK                     C CMSG      + G+ + L++    ++   N  + S      + P      K   NG   N  N+S    +  P L       D  +S  + +D TG F WC  K +E  I++   A   +  GHVV+ +  DV +  +GL+ L+ PLRASN  Y +LK I+ +G  ++L REW T++ FP V I+ G+P SR DLRAVN++  DMC++LS  +N +    +  ++ DKE I+ +LN+++M FD+       +   +      +S+ +      ML   +                 TG NI +ITELV D+N  +LD +      +E +++TQ +ACG+ F VSVLD L SATYFN + LTL+  LVTG   PEL+ ++AE     G        A R+RCRV QL+L D  FA +G    YGDLF K+++ +NMLC G+YRL      T S  T RYVIT P  +  L PTD +F LMQF  + G
Sbjct:  263 YLNRSWLGLRFLRALRLIQFSEILQFLNILKTSNSIKLVNLLSIFISTWLTAAGFIHLVENSGDPW-ENFQNNQALTYWECVYLLMVTMSTVGYGDVYAKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRKKYGGSYSAVSGRKHIVVCGHITLESVSNFLKDFLHKDRDDVNVEIVFLHNISPNLELEALFKRHFTQVEFYQGSVLNPHDLARVKIESADACLILANKYCADPDAEDASNIMRVISIKNYHPKIRIITQMLQYHNKAHLLNIPSWNWKEGDDAICLAELKLGFIAQSCLAQGLSTMLANLFSMR-SFIKIEEDTWQKYYLEGVSNEMYTEYLSSAFVGLSFPTVCELCFVKLKLLMIAIEYKSANRESRILINPGNHLKIQEGTLGFFIASDAKEVKRAFFYCKACHDDITDPKRIKKCGCKRPKMSIYKRMRRACCFDCGRSERDCSCMSGR-----VRGNVDTLERAFPLSSVSVNDCSTSFRAFEDEQPSTLSPKKKQRNGGMRNSPNTSPKLMRHDPLLIPGNDQIDNMDSNVKKYDSTGMFHWCAPKEIEKVILTRSEAAMTVLSGHVVVCIFGDVSSALIGLRNLVMPLRASNFHYHELKHIVFVGSIEYLKREWETLHNFPKVSILPGTPLSRADLRAVNINLCDMCVILSANQNNI----DDTSLQDKECILASLNIKSMQFDDSIGVLQANSQGFTPPGMDRSSPDNSPVHGMLRQPS---------------ITTGVNIPIITELVNDTNVQFLDQDDDDDPDTE-LYLTQPFACGTAFAVSVLDSLMSATYFNDNILTLIRTLVTGGATPELEALIAEENALRGGYSTPQTLANRDRCRVAQLALLDGPFADLGDGGCYGDLFCKALKTYNMLCFGIYRLRDAHLSTPSQCTKRYVITNPPYEFELVPTDLIFCLMQFDHNAG 1183

The following BLAST results are available for this feature:

BLAST of TCONS_00000180-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00000180-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1

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Match Name	E-value	Identity	Description
KCMA1	0.000e+0	39.24	Calcium-activated potassium channel subunit alpha-...	[more]

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TCONS_00000180-protein (polypeptide) - C. hemisphaerica

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