TCONS_00000171-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00000171-protein
Unique NameTCONS_00000171-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length665

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00000171-protein ID=TCONS_00000171-protein|Name=TCONS_00000171-protein|organism=Clytia hemisphaerica|type=polypeptide|length=665bp
LDIQWNRFYYTREDVGLIRKNIPALKYLKAAFNPWMKADSLRLRCIGRLR
SLLSMDSEDVTQEETNTALRLAAGSRIAYITVLANSRTEKEPLRTLNLSN
TTDVLITQSMNKPVKLSEDDRQWLSRVTCLRLDGQHLSKISNLEKLENLK
WASFNDNDITKIEGLDNCKDLIELSLANNCLSKIDGIHHLKKLQSLDVSN
NNLSSLDGIDFASLNNLRFLAFDNNFVLSLNGLQHSTSLLEIYAGNNKLQ
ELRDIFYLKNIPTLIILDMMGNPLVKECNNYRLFLIYHLQSLKALDGIPV
NFTEGGMAKDTFGGKLSTDFIAEKLGHSNFLELCELDLPHCNIRTVDLNS
SELFKNLRSLNLEQNNLSCFGGIVNLHNLKVLCLNHNHIESIFPKKSGTN
SPQVISTNKNASSDDSTNQFKAVLENLEVLHLGYNGIANLAALELGRLVS
LKALFLQGNEINKVDGLDGLYELRELVLDKNKIKAFTENSFRNQWKLAEL
HVEENRLRDLSNLEPLTCLNRLYVGLNRLQYGTDLEKLECLPNLFELSVI
GNPIARRMSHRMMLIFRQPNLLSIDGIPVSNEERSKAEIHFLEQQGGIQA
LQALSNSYDNSFPGLQSNNRNPLKVSNYTSSGPNERFWNPHHNEDKSRSK
KNHRGSNKIPNNRYT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_000099XLOC_000099Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00000171TCONS_00000171Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR032675L_dom-like
IPR001611Leu-rich_rpt
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00364LRR_bac_2coord: 190..209
e-value: 49.0
score: 8.4
coord: 424..443
e-value: 240.0
score: 3.1
coord: 236..255
e-value: 67.0
score: 7.4
coord: 494..513
e-value: 10.0
score: 13.7
NoneNo IPR availableSMARTSM00365LRR_sd22_2coord: 424..445
e-value: 160.0
score: 5.8
coord: 354..375
e-value: 280.0
score: 3.8
coord: 516..537
e-value: 76.0
score: 8.4
coord: 146..167
e-value: 0.79
score: 18.8
coord: 448..469
e-value: 0.82
score: 18.7
coord: 168..189
e-value: 35.0
score: 11.1
coord: 376..397
e-value: 17.0
score: 13.7
coord: 190..211
e-value: 0.2
score: 20.8
NoneNo IPR availablePFAMPF14580LRR_9coord: 192..319
e-value: 7.1E-13
score: 48.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 612..665
NoneNo IPR availableSUPERFAMILY52075Outer arm dynein light chain 1coord: 127..309
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 424..447
e-value: 17.0
score: 11.5
coord: 190..213
e-value: 0.6
score: 19.2
coord: 376..400
e-value: 26.0
score: 9.9
coord: 448..469
e-value: 180.0
score: 2.9
coord: 470..493
e-value: 1.3
score: 18.1
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 315..475
e-value: 4.9E-21
score: 74.2
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 198..313
e-value: 1.3E-15
score: 56.3
coord: 476..603
e-value: 3.5E-14
score: 51.6
coord: 1..76
e-value: 0.012
score: 14.0
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 80..197
e-value: 3.4E-11
score: 42.1
IPR032675Leucine-rich repeat domain, L domain-likeSUPERFAMILY52058L domain-likecoord: 328..573
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 518..539
score: 4.909
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 170..191
score: 8.105
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 356..377
score: 7.789
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 332..353
score: 5.417
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 450..471
score: 7.75
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 426..447
score: 7.034
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 238..259
score: 5.995
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 148..169
score: 7.273
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 216..237
score: 6.172
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 126..147
score: 6.018
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 496..517
score: 7.774
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 472..493
score: 5.81
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 192..213
score: 8.428
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 378..399
score: 7.08

Blast
[Close]
BLAST of TCONS_00000171-protein vs. Swiss-Prot (Human)
Match: LRRC9 (Leucine-rich repeat-containing protein 9 OS=Homo sapiens GN=LRRC9 PE=2 SV=2)

HSP 1 Score: 497.278 bits (1279), Expect = 5.105e-160
Identity = 273/625 (43.68%), Postives = 411/625 (65.76%), Query Frame = 0 
Query:    1 LDIQWNRFYYTREDVGLIRKNIPALKYLKAAFNPWMKADSLRLRCIGRLRSLLSMDSEDVTQEETNTALRLAAGSRIAYITVLANSRTEKEPLRTLNLSNTTDVLITQSMNKPVKLSEDDRQWLSRVTCLRLDGQHLSKISNLEKLENLKWASFNDNDITKIEGLDNCKDLIELSLANNCLSKIDGIHHLKKLQSLDVSNNNLSSLDGIDFASLNNLRFLAFDNNFVLSLNGLQHSTSLLEIYAGNNKLQELRDIFYLKNIPTLIILDMMGNPLVKECNNYRLFLIYHLQSLKALDGIPVNFTEGGMAKDTFGGKLSTDFIAEKLGHSNFLELCELDLPHCNIRTVDLNSSELFKNLRSLNLEQNNLSCFGGIVNLHNLKVLCLNHNHIESIFPK------------------KSGTNSPQVISTNKNASSDDSTNQFKAVLENLEVLHLGYNGIANLAALELGRLVSLKALFLQGNEINKVDGLDGLYELRELVLDKNKIKAFTENSFRNQWKLAELHVEENRLRDLSNLEPLTCLNRLYVGLNRLQYGTDLEKLECLPNLFELSVIGNPIARRMSHRMMLIFRQPNLLSIDGIPVSNEERSKAEIHFLEQQGGIQALQALSNS 607
            LD+ WN+   +  ++ ++ K+  +L  L    NPW K  +LRL  IGRL++L  ++   +++EE   A++  AG+RI  +++L +S T++E  R L++  +  +L   S   P  L      +L ++T L LDGQHL +I+NLEKLENLKWASF++N++TK+EGL++C +L EL+L  NC+SKI+GI  + KL  L ++NN L+  +   F ++ +L  L+ +NN + SL+GLQ S +L+E+Y  NN +   +++  LK +  L+ILDM GN ++    NYRLF+I+HL  LKALDGIP+  +E   AKD FGG+L++D IAE+ GHSNF ++ EL+    +IRTVDL   + F+N+ ++NL+ N+L+ F G++ L N+KVLCLN+NHIESI P+                   SG     +  TN++  S ++      ++ +LEVLHLGYNGI NL  L+L RL +LK LFLQGNEI++V+GLD L  L+ELV+D N+I++F +++F     L  LH+EENRLR+L  L+ L  L +L++G N++Q  T+LEKL+ +  L EL+V GNPI R+M HR MLIFR PNL  +DG PV++++R+KAE H  E Q    +L  +++S
Sbjct:  765 LDLSWNQLKKSGNEINMLCKHTTSLLTLDIQHNPWQKPATLRLSVIGRLKTLTHLNGVFISEEEATAAMKFIAGTRITQLSLLRHSSTKEERPRILSIWPSAKILTQVSKLGP-HLHLSGNCYL-KITALNLDGQHLFEITNLEKLENLKWASFSNNNLTKMEGLESCINLEELTLDGNCISKIEGISKMTKLTRLSINNNLLTGWEEHTFDNMLHLHSLSLENNRITSLSGLQKSFTLVELYISNNYIAVNQEMHNLKGLCNLVILDMCGNIIIWNQENYRLFVIFHLPELKALDGIPIEPSETDSAKDLFGGRLTSDMIAERQGHSNFKQMQELNWTSSSIRTVDLIPVDQFRNVCNVNLQNNHLTSFSGLIYLPNVKVLCLNYNHIESIMPRLKPQTHLTSRQLLYQKVPSSGYGQQGISKTNRDIMSSEN---LPPIMHSLEVLHLGYNGICNLIQLQLNRLRNLKFLFLQGNEISQVEGLDNLVVLQELVVDHNRIRSFNDSAFAKPSSLLALHLEENRLRELGKLQSLVKLEKLFLGYNKIQDITELEKLDVISTLRELTVYGNPICRKMLHRHMLIFRLPNLQMLDGSPVNSDDRAKAEFHLAELQAKKNSLIPVTHS 1384
The following BLAST results are available for this feature:
BLAST of TCONS_00000171-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LRRC95.105e-16043.68Leucine-rich repeat-containing protein 9 OS=Homo s... [more]
back to top