XLOC_042526 (gene) - C. hemisphaerica

Overview
NameXLOC_042526
Unique NameXLOC_042526
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_48:290213..302351+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_042526 ID=XLOC_042526|Name=XLOC_042526|organism=Clytia hemisphaerica|type=gene|length=12139bp|location=Sequence derived from alignment at scaffold_48:290213..302351+ (Clytia hemisphaerica)
AATTCAGTAGATGACTTTTCCAACTGGATCCGACTGACCTCAAAGATCAc agatgttttttttggaaaaaaaggcAAAAGTTAAGACTGAGATTGATTTG ATGACAGGACGAAAAAGAAAGGTGATTACTTTACACTTTAGGTGTAATTT TCGAACTAAAACTGTTAAAGTAAGGTACTGGAAATAATGTAAGGTACCTA GGCAACTCTGGATTTCGAATTAGTTTTAGCTGTTTTAGCGGAAATTCTGG CAGAATGGCTGGGGGGCTGTTCTCCATTTTGGTTAACCTAAacaacctga taacagattgtgtattttctggcccagtacgctgaagctcgcattctcgc gcgggcgatTAAAGATGAGgtggcaatcttgcactgagggtgctacttag tttccgcccttttttgcgcccacaatagaatgATCCAATTAAGGgggtat ttcaaatgataaacgatgtcgttttgtaagtgtttattttctaagagata caaatagtatattgaatattattaacttatttatttaaagtatttttgag cccaaattAAATATCTGGTTGNtggaacggcttcaagaaagtcataatgg cagataatttaaaagtttctgatgaggaaatgtgtgtaatttatcgatgt tgatggcttgttgattctttatagaaaaaagataacaggtatagcttttt ctaatcctggaatatcgaggttccagctacactgtcaGAGGGAACCCCTC GACAGTTTTCTGTCGGCGCATgcgtcattttttgaaaataattcaaaatt gcgCAATATCCGTGGTTGtataattgaaaataaaatggccgCATTGTACC GCATTGTTTGTCTTTTTGaataatgtttttatcttaGTGAGGAAAACCAC TGCTTAATTATTGATTTTGACTAACTACTGCCGTTTAAaacaaaatctaa atctaattCCGAGAATCTGAAAGTTTATGAAGCAATTCTACAGTGAAGAt cttaaagaagaaaatcaatctAATCACATTGAGAAAATAATGGAAGTCTT TCCTTTTGCcattaagaaaaagtaatattcAATGATGTTGCTAATATTAT ATAtacttgttttctttttcatacagcTGGCTACCTGCTGGATATCTACT TTATCTTTTATCTAcattggagtgcaatttctaggCTAATAAGGCAAAAA GTATATGGACTCAAATGCTCTCTCGTTCGCtgtgttaaaaacaaaacatc tgAAAACACAAGTGAAGAAgacatttttgttcattatgttttatatacaa cagaaaaaaacacttataAAATAGtgatttctcttctctttttaaaaata aaagttcatGTTCAACTTTTATGTTTGTTTTCTTCTGCCATTTTAGAATT AATAATTATGGTGTCAGCCCATCTAATTATGCGAAGAGCAtagttataaa ttaaaaaagagGGAATTCTGATtagtttttaaattcaaatttggtgtgAC AGTTAatcagggctcgaaataacggtcggacatcggacattgtccgaccc aattgctgaaatgtccgacccaaatcgattctagtcggacatcatgaccg acccaattactttcggtgccttcaaaaaatttgtcagatgcgttgtgata tttccaaaagaaattataatttacatagaattagcaacttctttatttac acactcaaagttgcgatcattagtgctagatattcattttgtgtgatgct ttttctcaacaaatgaaaGCATGCTTCAAGTAAAAATCATGGGCTTCCAA CCATTAATTGgcatttgtttagcttcttcgtgaTCAACGTGAAATTATAT CAGAAGCTTGTACTAATACAAGCTTCTGATCAACGGTTGTTCTGATATAA TTGAAGTATAccccacataaaaatcaatcggacatgtccgacccatttCA CTTTAAAGCcttaggacatgtccgacccaaatcaatttttgatcggacaa tgtgtccgaccacctaaatatcgttatttcgagccctgttaATAGTTTCA GTTACATAATTTGTGGGTTCCACTGGACTCTCTACTTTTTCCCCCATCAG AATtagtaaaggcaaaaagtagttgagctccagctcctggactactttat aacgtttttattgttttttgcaatgcaatgtcttctttttcaaaaaaatg tcttttcatttcttccttgaagtgttagcaagccattacaaaaagaattt tataaaagtctgcagtcaaaatgaagatatctggaatatcttgactcaat acaaaagtttgaattttcaattttcgcagcatatttcggtgccattttat atcccatttctgggctaaattgtcaacctcgaatgtctaaaaaggtgcta ttttagcggaaccaaaatctcaatatctccggaaccgcttatcattagga ggtgtatgacccctcatttttttcttttttgaagctctacaagatgaact aggtttgattgccaccagaatagtttcaatttgaccctggaatggctacT TTAATGGATGAATATgctcaaaaaagaaactttaaggggacccgtccata ttcatttgacaacgcaaaacgtcaaattgacgttatcctctgaaCCCCCT CCACCCCCACAGATAACCTCAAGCGATGTACTGATGTATACCAAAAGTTG TAgacatttttcatcaaagttttcccgttCCGTCGCAAATGCCGTACTTG GTTGTACCCGTGcgtgtatgtgttcttttaactaatgacttttatttcaa aaagaaattaaaagcttcACTTGGCGCTAGGTCCGTGCCGTGCTTTACGg gtttaaatttaccaaaatgggttcattgttacaaacctagtcgaatttag cgcatcaatctgcaaaataatataattttattactaaactgtgctaaaca cataaaaatattttttttaaatatttaaaaaattggaaaaattctgaaag atttctgaagattttttcgaaaattcctaaaaaaaaaatcaaactttttc caaaattgttaaaaaaatgctccattttggctgattttagaacaaaatac taagatttttcaaatattactttaagggaccaccctttttggtattttag tacacatatggtactaaaattatttttgagcttttttgcagtaccaccac atcactaaatgtcatgatgtctgagattttagtaccgaccccccccctgt ttcATACACAAATATGTTTTCGAAAGCTTATAAAGTATAGTGTGGTTGGT GGTTACAAGTATccgcgattttcacaaaaaggtatacctttgatttctta taacgtcaaacctaacttttgaaaacccccccaccccctcataacgacaa tttgacgttttgcgttgtcaaatgagtATGGACGGCTCCCCTAAACTGAT CACACAAGAGAAAACAAGGTATAATAACATCATACACAAATATCacttaa aaagagagaaatatatcataaacaaacatctttatattatcagtagaaga aaactgaagctatagaaaatgaatacaaacCATTACTGAATACTTTTATG AAGTTTATAAAGTATAAAGAGCAAAAAAACTTCAgttttaaaacaataac aaacatccATTTTCACCTTCCACCTCCAATTTGAAACCTTTCCAttcgca aagcattgtgggacagaattttaattcctatatataaaattaaaaagcac TTTTCATGGagtgccattttagtttttaagTTTTCTGCACAAGACAAAGA TATCAATctccaggatgcatcgtctcttatttttccccctattttctact ttcctatcttctatcctgattttctctctttctcaagtgtttctaactgt tttctaagtatttttctgaaatttgcccgtaccgtTGAAACAGGTCTCTG TCTCCGGTCTCCCCGGctccggctcgaaccaccaaatgcaagcaaccatg gtttacaaacccaacaCCTAACCGCTTGTGCTAATGAGACACGACAAaaa gctgtcattcacaaatacttaccgtaacttggtctaatttcgacatccct cctctaattccgacaccctttttatcagctaaaATTGATAGataggttga aactgtttttctttgcttagtggtcagagaggaacaATCCTTTTTTAATC AGTGATTTAAACTTTAACATTATttctgtctctaaagaagggtgtcgaat gtccaaaatttaaaaaaaaaatgagagTATTCAATCACTTTCTTTAACAA CCCTTTGAAGAGAAGACTCGATAAAACTGTTcaagtactttgattgttat tgattactttcgataactttgacaactttgataaccaattgattacttcg ataaccaattactatgatatatctttaagaaaaataaaaaaaatgacctA AAACCAACGCACAAAAAGAAGGCCCGCCATGCCATAAAGATTGATCCCCT TGTTTCTCCCAGCCATTTTGCCCGCCATTctagaatttgtctgtaacagg gggccGACAACACAGGATTTCTGAGGGCAAAAGTtatcaccaaaattcga aatttccaaggcgagagaagaaaatgtatgaatttccaaggcaattgact ttgtattttgcaaaagtacattgattttcatcagaatttccgaccacaac tggaaaagaaaaattattaccgaggctagaaataaataaaaaaagtatgt TGTCCGACGGGAGtaacaaaattttttggaatggcccattttgtGTGCCT TTGCTCTGGGTTTCCTCAAGTATCTCATATCGcgcattctgattggtcag agaAAGCAAAACTGGTTTTGTGCGCATGAATCGCATGATTTAACTGGCCA AAATAAACTTAGTTTCAGATGATTTTGACGCCCTGCTactggaaacatat ttgataaaattgaagGCCGAAAGGTACTCAATAAAAttgaaggtattcaa tatgatcgaaggtattcaatatgatcgaagGTAATCAAAAAGTAATCGAA ATGGTTTAATAAACCAAAAATGGTAGAAGAAAATGTCATAATCTGGAGTC GAGTGAGATATGGTCACTGACCACCTTCGATTATTAttgatcattattga ttacttcgatcacaatcgaacgttcCATTAGTACCATCTGATAGTCATTT TCATATCCAGGCACTTCCAGGccctttttcataaaatttcacctTCCAGG GGTGTCAACCCCTAATTTTCAGGGGATTagtttgttatccaaaatttcca ggggagGGGGTCAGGGGGTCAGGTTTGTCAATAtccctgtacaatttttt tttggaatatacTGTTTAGTCTACTACAATCCAGTACGTGTATGTGTGTG TGTCGTGTAATTTTGTGTCAACTGCGCGCAcgcgtccaaacaattttcaa ttttttttattttagcgaTCGCatgaaacttcactctccctcTAGGCAAC AAAATTCCGGTTCTCGTATATTTATATACGATATATATATTCCTTATAAG GGAACCCAGCAAACGGTAGGTATAaggaactccttttaatcataacttct tttcctctagatggattttgtgaaattttcaggagagatccataaaatcA TTAACTTGACAATGAGCAATGTTATGTTGTTTCAGGAATGATGTGAATTC ATTGGAGATGAATTGTGGACcattgcaatgatggtgttTAGGTAACCAAA TAACGTGAATAATTTGCTGATTTTTCTGATTATTTCTGATGAAGTGGTGC CACTCTAATCCAGTAGTACAAGGAGGATGGTAATGGGCCTTTCAGATCAG CTACAAGGGTGATACAAATCAATATCttccttattttctttttcacgcaC CCTGTTGATGATGATGTTGGAGTCTATTGATAgctttctttggtctttga tTTGTTCTCTGACTTTCTCCCTTCTAAGTAACAGCTTCATGTTGTTCAGG TCTCATAGTGGGCACCCCCCAtttaaaaagggggggtttgagaattttac tgaatttaaaagaaggggggcttgtgaaaatttcaaataaaaggggtggc ttggacaaaaagtgggggggtaaattttttaaggggggggcttggaagat ttggcaatttgcaaaagagtgttttccattcatttttcaatttctcattA TTGGTATCTTAAATATCTTACTGTATCtgttaaaaagtaatttctgcCAT CAGATTCATATTATTGTATTCTTCATTTTAATAACCTTGGAATATAATTA GAGATTGTAAGAGTTTGTGCgtaaaagattgaaaaaagagGGGGTTGAGC TAAAAGAGGGGGTGCCATTTTTAAGGGGGGGCTTGATACCCCTCTGCCCA CTGCACTATGAAGTTCAACGAACCATTTACTTTTGTAGTGTCGGCaaaac tttttggttcttttgcCACTTTTGGAATCTTAGCATTCACTGTCTCTTCA ATTTTGGTGAATAGCTTCTTTTCCAGGACAGAAAATTGGCTCTGGATTAG ATcagtttttgtggtaaaaaaaatgttggaaaaatgccggaaatatgccg gaaaaaccggttttttggcattttcttgagatttcatcattagttttttc tgattttttgcacaaagatgcgtattaacaatgtctaaaacatggcctag tccgatttttgagaaaaattctattccggctgaaaatgccggaaatatcc cggaaattgccgtttttgcagattttcatcggaatttttccttatatttc gttgttttttcacacaaaaacattgttgatagcaatgcccaccatcaagc atggtttaattgtcaataaaagtgatttttgaaggcggaactttctaaaa atcgccggaacagcctattttcgccggaaaaacggtatttcttgaatttc tcgagctgtactttatattttttcatgaaattttgcacactgatgcaaaa tggcaatacctaaaatatgacagagcctgattttcaattaacgtactttt ccagccgaaaatgccggaaatatgccggaaaaaccggttttttggcattt tctcgagatttcatcattNtggaaatatgccggaaaaaccgtttttttgg cattttctcaagatttcatcattagttttttctgattttttgcacaaaga tgcgtattagcaatgcccaaaacttggctgagtcagatttttgaggaaaa atctttaccggtcgaaaatgccggaaatataccggaaatcgacgtttttg cagattttcatcagactttttccttatatttcgttgttttttcacacaaa aacattattaaaagcaatgtccacgatcaagcatgattcaattgtcaata aatctgatttttgaagccggaactttctaaaaatcgccggaacagccgat tttcgccggaaaaacagtatttcttgaatttcttgagctttctatttttt catgaaattttgcacactgatgcaaaatgtcaataactaaattgtgacga agcccgattttcaaaaaaaattcatttccggccgaaaatgccggaaatat accggaaaaactgtttttttggcattttctcgagattttatcattagttt tttctgattttatcattagttttttctgattttttgctcaaagatatgcg tattaacaatgcccaaaacatggccgagaccgatttttgagaaaatggtc gaaaatgcctgaaatatgccggaaatcgccgtttttctagattttcattg gactttttccttataattggttgttttttcattcaaatcctgtttttttt cattgaaaaacattattaatagcaatgcccaccatcaagcatgtttcaat tttcaataaaattgatttttgaagccagaactattttcagctattttaaa agtcgctgGAACAacccattttcgccggaaagacagtatttcttgaattt cttgagctgtactttatatttttttatgaaattttgcacactgttgcaat atgacaatacctaaaatgtgacggagcccgattttcgaaaaacttttttt tccggccgaaaatgccggaaatatgccggaaaaaccggttttttgNNcaa aacattattgataacaatgctcaccatcaagcatgattcaattgtcaata aaactgatttctgcgaccagaactttctatttatttttttccctacaacc ctttcctctccccctaccatcaatcaatgatgaatttcttgcgtcatgct ttctgactgattttttttcatttttctccttgcattgctatctaactttc atcatcaggtaggtccattcagcatctagcttgtttcatTATCTTTAATG TAATTATGCTCTGTACAACGGTTGTTGTCAGTCTCATCTCCATCAAGGGT CAGGTTGTTCTTGTCAGGTGATGCCAGTTTTTGTCGAAATTTggttgttt ttccattttttgaaattttattaaaattctcCATTTTTCATTGTTTAGTT CATCTACACTTCCTTCTGGTGATGCTTTGCTGGCAGCatccatttgtttt gattgatggGCTGCAGCTTCAGATGTTTTACCAATATTGAGGACATCATC AAGGGTTAAATCCTTTTTCTCCAGAAGTTTGGTTCAAAATTTGGACGACT TACAACCTCGGATGACTTGATCTCTGATATGTTCACTTTGTTTGTCACCA TATTCACAGCTAGTTGAAAGTTTAGGTAGTCGAGTAACAACTTGTTCAAT GCTTTCACTGGCATTTTGTCTGGCATTTCCAAAAAATGAGCATTCATAGG gaatgtttttcttaactttgaAATATTCCTCTAGTGCTGCAAAGGCTTCC ATGGCTGCTCGGTCGCTAGACAAAAGTTACAGAAGACGGATATTTGGTAA ACAATGGCCAAAAGCTCAGATCCCAAAATTTTGGGTCCGGAAAATAAAAC CCATAATGACGGTTTGCGGGCAAGTAAAAAATGTGACATTTAGAGTAAAC ATATATGGAGCTACAATTAAGTTTTTAGAAACCCatgtttcttttaattt tctgagagtacatgcttttttttataagaatagtgtactttggatgaagg tcaagtattcttaagaaattgcgaaaattgagggtgaaacagggtgaaat attcttaacgtattcttacttttttagacttaacgttatacaaacatgag aaatgatcaatttgagatcTTTGGATTTTTGAATGCACATTGGGagctaa aattatatttctgctGTGGAGTCGTCGTttaaattttacaaaactttgtt tGGGTGGTCCTTAAATTTTTAACGATTTAAAAACCTTTGTCCAAAATTTT ATCCTATTAAAAACaccttttttaaaacattttgttcggCCTCACAATGT TGCCTCTGAttgaaatcttgattttttgaaagtgcTTCATATTAATAAAT GTTTTAATGAATAAAGATCAATTGGGAATCAATCTTTCTGCCTTTTTTAA GATCTCTTATATTATATGCATTATTGATTTTTACATCAGTCCACAAATAC TAAACATCTAAAAatgactttcaaataaaatgaatataaattatTCATAG CTCTATAAGTCATTCAatgtaaatttagaaattatGAAAGTTATTTCCTT CATATCATATCAGTACTTTTTACAGAAAGGGGAAAAACTGTTAAACGTGT CCACTTGTCTTTTTATAGCAACAAAAGAAGGTACAATGAATCTgctcatt tttgttttggtgatAAATTATCTTTTCCATGGATCAAAAGCTGCCTCTGA TGATGACTGTATATTGAGTGAATGGGGTGACTGGGGCCCTTGCAGTAAGA ATTGCTCAACGGGTGGTACTAAAACTAGAAGTAAGACGATTATTCAAATG AATGGCTTCTTTGGTGATCCATGTTCAACAAAAACTATGAAAGAAAGTAC TGAATGTGGCATTGAAAATAATGGGTGTGAACAACTTTGTGATCCACAAA CAGGACATTGCCATTGTAGGAAAGGAATGATGCCAGACGAAGCAAACCTG AAATCTTGCGTGGATATCAACGAATGCAATGCTAATTTTGGACGTGGAGA TTGTGCTCAAAAGTGTGAGAATATAAAAGAGGGGTACAAATGCAGCTGTT ACCCAAACTTTTACTTGGCCTCTGATGAAAAGAATTGCAATTTCAATACT TCAGCAGAGAAATGCGATTTTGCCATACGAGAATATTCCGACACGTTTGA GTGTGTTTGCAAAGATAAAGAACTTGTGGGACTAAAATGTAATAAGAATA AAGATCAATGTAGTAATGTTAAATGCATGAGTGATTCTGTCTGTTTACTT TACAATCACCCTGGTGTCAATTGCTTTGCGATCAAAGATATGATTCCTAT CTTGCATCCCATTAAGTATTCTACCTACAATATTGGAAATTATCGATACA TTGTTGAGCTCTACATGACAAGAATCTTGGAGAAGATCGCACCAAAATCA CCGTTATTTGGCGGAAATTATGACACCAATGACATTCATTCAAGTGATAC TTCAAAGTTTTATTACGTAGAAGGGTCACAACCTCGGCAAGTCAAATCTT TCACCTACGTTTTGTATGCCGTTTTTAATATTGAGAATTCATTAACATCA GCCAATCCACAGGAGATCTGTTCAAAGCTTTCAGGAACTGACGTACATTG TCTCACTCAAAGAGAATGTAACATTTTAAAGAGTGAAGGGTTTTCATGCC CCCATGTGTATACATCTACATTCGGAAAACAAGAAAGCAATGACAGTTCA AAGAGCAATGTGATTGTCATTGTCGTTTGTCTGGTAGTTCTTTTGGCTCT CATCGCCATCGCTATCTGTTTCGTCCGAAGGAGAGGGAAATGGCGCAATC TGAGAATGATGTTTCATAGAGATACTGAAGAGGTCAGGCAAGTGAATGAT ACTCTGTTACGTCAAGAATCACAAAATGAACCACCACCTCCTTACACTGC TCAAGATTCGAATTTAGCACATATCGAGCAATTCGATCGAAGTGTGTTCA AAGATGAACCTTTGAATAAGAGGGTGGAAGAACCCGTCTATGAATCCGTC ACCAACCTAACTGGATTACCCAAATACGAAGACGAGTATGAGTCAATGAG CTCAGTCAAGAAAGGAGATAAAGTTGATTTGCCAGATGAAGAGGATGAAG GCGCAGCACGTTACGTTGCAGTTCCTTGTCCCACCATAGCTCCTTCATCT GGTGAGGCTGCTGGCCAATCATCCTCATCTGCTACTGAAGTCGAACCGCA TTATGTTGCACCAACTAACAATAAACCCTTACTATATGACGATGACGACG TTAAGATTTGAGTGACGCCCACGTCACCTTTTTAGATTAGTTCTGTTTTA GTCTGTTGGGTCTTTATTTAGTGGTCTGAATTTTAGCCTGAAAATTTAAT CGAATCCAtatttcaaaaagcttttaaaagtTTACAACTTTTCCCAATCT ATACTGCTTCTAACAACGTTGGAATTTGAATATCAGATGCATTACTATGG AATATTATTACAATAATGATATATGAGAATGTATGTCCTTCCTCTGCTGA AATTACCCTATGCTCAGCAAGGAATAATATCTATGTTacaagagaaattt ttagtaaTGAATTGAATGTATTTAAAGAAACTATCAATGATATTTTCTGT TAGTTAAAAAGTTTTAAGCTTATTATTTTAAGGGGCCTACCCTTGATCTG TGCTATTTTTTATGGGATGCAGCCGAAAGTCGTGAATGTTATCAACTTTT TGAGAGGTTGGCTACATTTTGTCTCATAGAAGATATCACGGATCCGAATG GTTGACCCTTTCTTAGATAGTGTgatgtttcttttttaattgtaaataGT TAAATTGTCGCTTATTTTTTGTACTTtagaattttcagatttttatacAA CCTAACGAAGTAATCTAGTATAGGTCTCTTCAATTATATAAATAAGAACT TCTTGCACTTTGTACATAGAACGCACGATTTGAAATATCAAAGTATCGCA GTACGCCAAGGCGTTCTATCTAGACGGTTTACCTTTCTA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00068124TCONS_00068124Clytia hemisphaericatranscript
TCONS_00068125TCONS_00068125Clytia hemisphaericatranscript
TCONS_00068126TCONS_00068126Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00068125-proteinTCONS_00068125-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_48supercontigscaffold_48:290213..302351 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.35 8.5 3.05 1.45 11.04 9.52 13.53 15.48 10.5 13.22 10.86 7.15 11.19 10.56 10.9 12.3 11.94 12.99 8.25 10.35 10.66 9.13 16.74 17.26 20.31 23.18 18.01 15.63 21.6 17.78