XLOC_042002 (gene) - C. hemisphaerica

Overview
NameXLOC_042002
Unique NameXLOC_042002
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_466:456572..462076-

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_042002 ID=XLOC_042002|Name=XLOC_042002|organism=Clytia hemisphaerica|type=gene|length=5505bp|location=Sequence derived from alignment at scaffold_466:456572..462076- (Clytia hemisphaerica)
CAACAGCCATTTTGTTTCTAAATGAATCTATGTTTTCATTTTCATTTGTT
TTCCTTTTTTCTGCAGAGTCAGCTTTTTCCATAAATTATGCGCGCGCATC
GAAATTATCAAAATGCCTGCGAAAGTACTGCTAAGTAATACGCTGAAAGC
TGGCCAATCAGACCGAACTTGCATTGCAGGGAAAAATCTCCCTGCAGGCG
AGTTACCTGCGCCAAGCGTTAAACAAGCAGCAAAAATAACATAAACTAGA
CTGTGAACAAAGTTTAACGCTTGGATTCCTAGGCTAACATCATTCAGGCA
AATGATTTCTGTAAAACAATAAAATGACTAATTAGAATGCTGTAAAACTA
GAAAATAGATACAAATCTCTTGAGACTTTAAGACCACTATTCAAAATAGT
CTGATAAATTGAATATTCTTTTAATAAAAGAAGCAATTTTTATCAAAAGG
GCACTCTGCTATTTTAAATAGTGGCCTTAAAGCCTCAAGAGATTTGTATC
CATGTTCTTAGTTTTACAGCATTCTAATTAGTTATTTTATTGTTTTAGAT
TTTGAAACCATTTTTAAGCTCAACTTTGTTTTACAGAAATCATTTGCCTG
AATGATGTATATGATACTATACGAAATGTAGCTGTTTTTAAATCAAAAAT
TTCATCTTTTCCTTTGAATATCTTGGCTTGATTAATTTTCTCGGACTTAC
TTTTATCCTTTATTGGTCTAAATTATCAAGTGGTTATGGAGTTTGGAAAA
ACAAGGGTAAAACGAAAGCTCAGAACAACTCCGACCAGTAGTCATGACAA
AACCCTCGTCCCAAATGAAGAACGAAAAGAAAAACTAGTATCATCGCTTG
GTTTCGATGAAAATGAGTGTGACGTCATCATTGAAACCAAAGACAAAGAA
GTTTACTTACCGTTGAATTTCTTGGAAATGGTTTCCAATGACCAAAATAT
CCAAATGACAGATGGGAAACTATACATTGATGTTTTTTCAGAGAAGCTTA
TCAAAGCTTTATTATTTTACCGCCAAAAGTATTATACAGACAACTTTGAA
CGTAAGTATTGAGGCCTGGAAAACACGAGTTAAAAAAATCCGAGCTATGA
AAACCGAGCTATAACGTCATAACTCGGGTTTCTCACAACTCGGGTTTTAA
AGTGTACCTAAAAAACCCGAGTTATATAACTCGAAAATTTAAAGTGCACC
TCAAATGACCGAGTTAAAATTAACTTGGAAAATTAAGGTGCACCTTTAGA
CACCGAGTTATGACGTCGTAACTCGGGATTTTCATAACTTGGGTTTTTTA
AGGTCGGGTTTTCCAGGCCTCTGTAAGTTTTTAAAACTTTCCGATTCTTT
GAGGTTAGGTTGTAATTCTATTTGTAAGATATTTTTATAAGCATATCTAG
GCTCAGATAGGGCAAAAATTTAAGCCTGTTCTTTTTATTATTATTATTAT
TATTATTACCTTGGGCCTAAAATGTTCCGATTTTGATTGTTTTGAGTTTT
ACAGATTTCTAAAATTTTGCTTAGGAAATAAGCATCAAGCATTTGTCAAA
CCTTGTCCACCCCTCGATCTAAGCATCTCCGAGCCAAGTTTGGCTCTTTG
TAGTATACTTATAAAAATGCATGTAAATGCTTGCAAATGACCTCATAAAA
CGTTTCAATTGTTTTCAAATTGTCTGCAACCAAGCATTTGTACTGTACTC
TTAGGTTTCAAATAAACAGGGGGTTCGAATAAACGGGGGATTGGAAAATT
TTCGAGATTTTAATAAACGGAGGGACCTAATTGCCGAGGGGGGGGGGGTT
GAAAATTGTACTTCTGAAAACCAAAAAAAACAAGACGACTTGAAGTCGAA
AATTTCGCCTAGAATTTGAACTGCATGGGAAAAACAATGAGTAGAGATTG
AAGCTAATCTGAAATCTTCTTTACATCGAGCCTTGATGAAACAAATTTAC
AAGAACAACGAGGCTTAAAATCGCTAAACAAATTAAGACCGATTTAAGAA
GAATTGTTGCTTAATTTTTAAGAACTCTTACGAAGTATATGCTTATAAAA
GATAAATATGCTCATATTGTGCGCCATTCCCTGTTTACATTGTAAGAACT
AATTACCGAAAGGTATATCACCGTCTATCAAGAGTTATTGATTTGATTCT
TATAAAGTATATGCTTACAAGAAAAATAAATNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGG
GCGTTTATTTGGAACCTAAGAGTAATTGATTCTGGTCAAATTGAGGATGC
TCATATTTGGAATTTAAATGCTACTAAGCTTGAAAACCCGTATTATTCTA
GTGCTAATAGGAATCCTATTTGAAACATTTTTTATTTTGTTTTTTTTTTA
GTTGAAAATATTGCAGAAATTGAAGAGCTAATCAAAGTGTGTACGACTTT
TAAATTGAAAGTATTTCAAAACTATTTGATCGCACGTTTGGACAAGAAGT
ACATCGACAATGCAGAATATTTGAATAACGATAGTCTTCTCATTTTGAAC
ATCTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTT
TAATTCGGTTTCTTTTAAGAACCTTCCAATCCAGCCTTCCATGAGGCTGA
TTATGTTAAAAAGTTTAGAAACATGTAAGAAACATTTAAGGCTCAAAAGG
CTGATTTCTTAAGAAACAGTGAGGCTGCTTGGTAAAACTAGTTTCTTAAA
AAAAAAAAAAACGTGTACCGGAAAAATGGTTTCAAAGAAAATGTGCAAAA
AATGATGTGCAAAGGGCTTGGTTTACGCTCGCTTGATCAATTACTGTTAC
CTAATTATCTTGCTCTTGATAAAAACCTACGATTTGAACTACTAAAAGAT
AGAGTTATAGAGTGTTATAAGTCAAAATGTTTAGCTGACAATGGTGGTCT
TCGTGATTTACGTTTTATCTTCAATTTTCTTGACTTGATTTTCTATGAAA
ACCGTGTCCCCAATCTTGCGGTAAAGAATGAATTCACGGAACCTATACCA
TTTAAAGTGCCGCCTGTTGATTTAGGTTCAATATCATGTAAGAAAGATGC
AAAAAGCTGTGTTACTTTGATCGTTGAGAACAAGGAAATTCATATCAATT
CATTTGTTTTGACCGATAATTCACCTGTCTTCAAAGCTATGCTGAATTCT
ACATTTAAAGAAGGACAAACCCAGACGATCGAACTCCCCGGAAAAAAGTT
TGAAGACTTTGTATACTTTCTTCAATTCCTGTCGCCGTTATGTAGACGTT
CGATCAAAAGTAAGGATTCGTGACTTTTCATTTTGGTATTTTGCAGACCA
GAATGTAAATTTGGCTAAAGTTACATATTGATCGATTTACTCGTTCAATT
TGATTGAAATCTGTTTCTGAGAGGTGCTTTGTCAAATAAACGAGACTAGT
TATGCAAAATTTGGTCCCATGGCGAGTACCTTGCAGGTCTGTGAAATCGA
CCCCCTGCAGGAACGCAGTAACTAATTCTTGAACTTTTGACTTGAAATTT
TTACCAGTGGTAGATATTGACCATATATAAGACAGTGTATAAAATTTCAG
TTTAGTCACGTGCGTGGTTAGTATTTTACAGACCGGTCCGTTTTTAACTA
AAGTACTCACTTTCTGCATAACTGCTCGTCTGATTTTGTTTAATTTGTTA
CTGCAAGCTTGTATTATCAATATCAATACCTAACTTTTGTCAAAATTTCA
AGTCAATAGTATTTTTCCTTCCCTAGACACAGTAACCTAGGGACTGACTT
AGACAAGAAGGGCAATTTTGGGCCGGTCTGTAAAATACACGATACCAGCC
GGTGGCGAAAAATTGAAACTGTGCCCCAGAAATAGATGTCACGTAGAGTT
TCCTCACAAAATTTGAGCAAAAGAATGTAAAGTTAAAAAAATCAGGGGTC
CTAATTTTTTAAAAGATTATAACGTTATCAGGTGGCAATGACGTCATAAA
TTATGGCGAAATTTTCACCAAAGATGCCAATTCATAGTTGGTGCTAATTT
GCAAAATTTCAAGTAATTCATTTGCATTATCATAATTTTTATATACATTT
CACATTTCAGATGAAACAGACGTTGTAATTTTGGCACCGCTCTGCCAAGA
GTACCAAATCGATTGGCTGGCAGATAAAATCAAATCGTTTATTTGTAGTC
CAATCTCTAATACAAAGACCATACTCAAATATCTCTCCATAGCTGACACG
ATGAACTTTGGACATGGTATCGAGGAAAGTGTAATTAACCTAATAAAGGA
GCCTTTCCAGAATGTTCACATGGAATCAGAATTTCTACAACTCAACCAAC
GTTTGCAAATATTAATTGCTCGTAAGCTGCTTTGGAAAATATATAAGGTA
AATTTCGATCGTAGAAAAGGTCTTGTTTTAAACAGTATCATCGACCATGC
TATATTATTGATCTTTGATAATCAACAGCAAAAACATTTGATTGCAACTC
ATGATAGAGCTCATTGTGATTACGCCATCCACAAAAAAGCAGAGCCGAAG
GAGAAAGTTATCACCAAAAGGATAAAATTTGATACTCCTCGAGAATTGTT
TTCTTTTAGCAGTGACGATGATAATGATAATAATCTTTAAAAACTAGATT
TATCTGCGACGATTTGTTAAGAGTATTTGATGGTCCAGCTGACGTTTTTG
AACTTACAATATTTTTAGACCTACCTCGGAGGTCCTTTAAATTAACCTGT
GGCTTTCCGTCCGTCCGTCTGATGCAAGGTTTTCTCAGGATTTGCTCATT
AGATTTTTCTGATTTTTTTCACAATGATGCAAAATGATAATGCCCAAAAT
GTGAC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00067234TCONS_00067234Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00067234-proteinTCONS_00067234-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_466supercontigscaffold_466:456572..462076 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (1.06 tpm) - - (6.8 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.24	2.3	1.94	2.75	3.67	2.54	4.54	4.91	3.25	3.17	3.66	3.46	2.49	2.94	2.96	3.13	2.34	3.11	1.06	1.54	2.62	2.49	3.53	3.09	6.19	6.8	1.46	1.58	2.79	2.61