XLOC_041084 (gene) - C. hemisphaerica

Overview
NameXLOC_041084
Unique NameXLOC_041084
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_440:246175..251846+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_041084 ID=XLOC_041084|Name=XLOC_041084|organism=Clytia hemisphaerica|type=gene|length=5672bp|location=Sequence derived from alignment at scaffold_440:246175..251846+ (Clytia hemisphaerica)
aaaatgaCGAAAGATAAGATGAAAAAAGATAACGATATATAAAGTTAGGT GAAGTAAGTTTTAAAGATAAAAGTTTGAGATAAACTGACCTTGAAATAAG TGGGTACAGAAAATTAgagaaataagaacatttcgAAAATGAATTGTTTG GTTTACCTAATTTGCTGGCTATTAGTTGGCAGTATATTTTGTAGTAAGTA TATTCAAAACTATTGTAACCTTATTCCTGAAGTCCATCCGCTTTAAATCT TCTGTACTAaaataatttcatattttgtgtCTGTCACACTAAAATGGTAG GCCAGTTGCGATTTCGTATGGTTTGTCAGAGGGTTGAtttcccggggggg tactagggttgcgaccTGACGGGGGGttccgcccgactttcgaactttgg acacttaccgggactaaaaaggagaaaaagaagggaaattttgggaattt tacgacccttagcgggacaaatctgaccaattttgaccaaatttcgatct ttcagggggtaaaaagttgaaattttcctatttNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNagta cccccccccccccgggttaatTTGAATAGGAAAGAAGGATTTTGTGCAGC GACAATTTAAACCGTCTAATTTGCACTCAATCTCAATTTTACTTCTGATT GCTCAACCAAAGTTTCGATTCTAATAAACTATAAAataaaacccatattt actacttgtaaGGGTTGATGCAAAAAGGCCCTTTTCGCCGCCGGACTAAT TCGTTTTAAGTGTACAATAAATCAGCTTTCGAAATCAATGTTCAAAAAGT ACTTGTAAACCGAAAATAacttgtttttttcaattttcatcttcattatt tAAGATTTacgagttttttttatttgaacatTGTAATGctcggaaatatc ttttcaacaatagaaattttgctgactcagcagaaaagggcaaaaaacgt tgaaaaacgcttagtcagcaaaatttcaaactcaaatatctcatgatcta gcctaggaaaccctataaatgacccctctaatcgatagtactcttcgagg CGCATCTCGCATCTGTTAAAACTGGTATCTTtcgctgaaaattttctcaa aaatgctgacgtcagcacaaaatattgcatttttgaagacgtatcgaCCA ATTCCGGGTGACTAAGTCCACTAAATGAGACAAATGACCCCATTTTGGAG Atctactcttcaagctctatctgatggcacaatcagttttagctaaatga gaacttcaaaaatcgactttctaaggacccccaggctaaaatgaccctac ccccttcaagcccccataaaaaattttccccagctttgtcagcttggcaa aaactggattcggggtcccaagggaccatatgatgggaaaataaaataaa aacccatatttactaattgtaagggtgatcctggatcgccgccggactaA ATGGCGTTCGATAAAATCTTCGACAATTACTCAAAATCATACTGGCCGTT TTGAAATACTGTTAGGATTctgtttcaatgtttttgttaaaAGGATATct taatttataagaacatccaaaattttgaatcctTCGGATGATcttaactt tctgagttttaattagcctaaaaatgttcttattttccccaatCTTGAGT ATTTTTTCCTAAGAATTCGGGTGTTTCCAAGTCCCCAAAgtcataaaatg ttcttaatttgttcttaacattttatccatttaagctttatgttcttata tagtttgttcttataaaaagaaaacgtgtacctCTTGGACCTAAAATGAA GAATGGCAGTAATGATTGACCATAATGATGTTTAATTATTATACATCCAT GATCCTTATTTACAGAATCGGATAAACAAGCACGAGACATTCTAAAAGAA ATTGACGATTACATTGCTGCTGAAGTGAAAGGTTTttttgaatacacctt ttcgtccgtagccgccaattactgcgcgggcatttttttgtccattttaa caccctaaactcgatccaatccttttttacacctattgtctataggtgca aaacaaagactgggacggttttaggttggtaaaacggacaaaaaaatgcc aactcggcaattggcggctacggtcgaaaaggtgtattgcatTCTTAcaa ttttgatatttattatGAGGAAACCTGTTACGctgaattttgaatgtttt atttCAATAGTGAATTTTATATTCTGCATCTGCAAATACGTTTCACTGCT TAACACAAGAAATTAAGCCTTAGAAACCCGGTTTTTTACATCAAGTACAC ATGAAATTTATTCTCAAATGTACCAATGCTCTTCAATAACCCCGGTGTGA GGTTCTCAACCTCTTAAAGACTAGCAAACCTCGCCGTTGTATTTTACTAC AAGCTCACTACATTCGCTGAATACAGCCAAAgactttatctgatattccg atggcggattggcggccacccatgctaaagctctaaagaagtGGACcgat ttcccatcggagagtgATATTCGGAAGGAAACGTCGCGAAGCATACTGAT GCGTATTCCTTTGGTCCTTAATCATGTTCAGACGCTACGGTTTCtgttac ggatcgagagtgttcatattggttttggAACTTtcttcggagcaagaaaa cgaagCAGTttcgttccgatgaaaatagtggagcgaagCCGCTTCGATCT GTTTTACTTTggaacgtcttcttttttgacctttcgaattttgacgttca cactgtTTCGGAACGATACGGAACAGTAACATTTAAACATGGTCTTTAAC CTAGCGTTATTCTATCTTAATCTACGTTATTGTGCTTGTATATTTATTTA GCCGAAAGCGCTGATATAGCCTCGAAGCCAAAGAAAGATTTCCACACAGA GAAAGGTAGTTTTGAAATCGTCTACATAGAGGCCGGTCCAGCTGGTGGCA TACATCGTTGTTTTATTTAAACGTTAATTTAGAAGTTTGCGTTACGTAAC GGACGTTAGATATATATTGCTTGAACTTGTATGGCAGCTGAATCATGCCT TCATTTACCTAGCATATTTTCTCAATGTTCTGATGAATTTCAATATACAC TCATCTTCTCTAAAATACCTCAAGTCTGTCAGTCAGATTTTAGATGTCAT TAGGGTCGAGATTAGGGTAATTTATATGTAGACGGGTTGGCCCAGCTAGG TAAGGTGGCATGGATTTTCGAACGTTACGTCACagttttcgaaaaatcaa tagacgatatcggcttaacgtgaaatttcagatttgacctccgagaattc cccacaatgctttgtgcagaaaaaaattcaccttgaacttttttccgcgc aaagcattgtgggcaattctcggaggtcaaatctgagttttcacgctaag ccgatatcgtctattggctAAAAATAGAGCAAGTGAGGTTCGAAAATCCA TGCCACCTTACCTAGACGGGCCAGCCCGCCTCCATATGAACAGCCCCTTA GAGTTAAAATCATTAAAtgaaaacggctaaaaaacttCTATCTTTATCTT AGGCATTGAGCTAACAATCGAAGAACTAGAAAAGATGTTGACAGAGGAAA CTAAAAAGGAAACGCAAAAGAATTTTGACGAAGAAAAAAGTAAAGATGAT CTAatgaaaaaagaagatgaagaagagaaaagagattttaacgATGCTAT CGAtatcgaaaaagaaattgaagccTTGGAAAATAAGGAATTCGGTTAGT AGCAAATTGTTTTGGGTCGATAAACATAACCTGGTTTATGCTGCTTGTTG TGATAACTCAAACTTGAAAACCTTTCGTGGATATACTAATAGAAATTAAA ATGACATATCAATCTTTAGGGTCAAATTTGCCATAATAGAAGTGTCAATG CATATAGTTACCTCAACAAAAAGGTTACTGTTGCGTCAGACTAATATAGC TTCCAAGTGAAGCAAGTAAATAACTCAACAACCGCAATCGGAGAAGACCT AGTCTGAATCGCAGACCTCTACAAAACCCCAGGTAGtataggtctgctta atgatctaccaaccgctttccggttcgcaaagaaaatcttggcgagttaa taatttgattgacattgatgtgcgcgcaaaaacgatcgtttcgaacgtaT TTTTGTTAAAACACTTCGAAATTTTAAGGGTCTCTCAAGAATTCATATTT ATATCTTTGTGCGAAATTTCAGGCAAATTTGATTAGTTGATCGAGAAATA GGCTTAAAAAGAGTAACAGGATGTCTACAAGCAAACCTATAAATGCTAAG AACGTTGCAAAGACTTTGTTTTAGACGTTGTTTGTCAATGTTAGCAGTTG Aatactaccgtgaaaagcacaggtagaaatcatatatcgacgctgtgccg accaattcagattctattcagcgcgcaatcaacgcagagaaaagtaacca tgacgacctcCAAGATCTTGAATGAAgctcaaagttgatatttttgttcc cgTCGTCGTTGAAAACTCATCAATGCTTTtgaaaaagagtcagtgataga gaatcataacataaagttcgtctattatttcgattcaattaaagtgacat ttccataattaagagtttagtaattactgttatacatttggggatcatgt aaaagatttcttttgaaagaaacccATTCCAATTAcatttggaggtttct gggggagttcgtaaatagtaaactgcatactgatacagtctgacATTAAT GTGGTAATATTTGcttttcatctttgattttttctacagtgattagattg acacatgcgcgataaaatttctattattggtcttcagaggttgaaatatt ctcaacctctgatactcagggtagttgaatacaccttttctttttcaaaa ctcgttttctttttctttttcaaaactcgttttctttttctttatagaAG AAGCAATGGATAATTATGATTTCTTTCACGATTCTGGAAACATCACCAAA GCTGAAGAATCAACTATTAATGCTTNACTCAGGGTagttgaatacacctt ttctttttcatgatAGAAGAAGCAATGGATAATTATGATTTCTTTCACGA TTCTGGAAACATCACCAAAGCTGAAGAATCAACTATTGATGCTCTGTGGA AGAAATTTACAAGTCAAAAGCAAGACGAATTTTTTGATATCGATGGAGac caaaaagacaaagaaagtttgaaaagaggtttgaaaatttcatttcaaga tgatttcttttttttttttgaatattttctaaaCAGTTTTGAATCgcatt tctcatagtttttatTCTTTAGATAAAAGCCTGGTTCAGTGACAAGAAAA TAGATTTCGAAAACTTCTATCTAATTTTCTTATCTCCTTGCATTTCAGAA TTAACCTTAGATGATAGCAGTG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00065554TCONS_00065554Clytia hemisphaericatranscript
TCONS_00065555TCONS_00065555Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00065555-proteinTCONS_00065555-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_440supercontigscaffold_440:246175..251846 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.15 0.29 0.17 0.16 0.1 0 0.09 0.27 0 0 0 0.05 0 0 0 0 5.08 6.06 0 0 1.64 1.15 16.37 23.79 35.01 61.85 3.53 4.85 3.51 3.58