XLOC_040862 (gene) - C. hemisphaerica

Overview
NameXLOC_040862
Unique NameXLOC_040862
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_433:204259..212944+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_040862 ID=XLOC_040862|Name=XLOC_040862|organism=Clytia hemisphaerica|type=gene|length=8686bp|location=Sequence derived from alignment at scaffold_433:204259..212944+ (Clytia hemisphaerica)
GTACAAGCAATAAGATATACGTTAAGCGTTTCAGGTTTATCTGATCTCAC
TGTAATTCACTAAATTAATTCTTTTATTTAGAAGCAAAGATGATTCTGTT
GATATTCAGTGGTATTATAGGTGTTTTGTTTGTCTGGTTAGTATTAGTAT
ACTTAGAGCATGTATGGAAATTATCTTCATATCCAAAAGGACCATTCCCT
TTACCTATGATTGGTAATTTTAATGTATTGGTGAGTGGAATACCGGCTGA
AGATTTCATAGAACTTGGAAAGGAATATGGTGACGTGTTTAGTTTGAGTT
TAGGTAAACATTTTTattagattttccaaaaatctggATTATTTTCTTGT
TGCTCTTTACTTTGATAGTCGGAATGAAATTCTTAACTAGATCAATCTCT
TTCAAATTTCGTTTCGACAGTCATGAAATTCTTTAAAGGGGATCTAATGT
CAGAAAATTCATGTacctcatttttttacataggaAAGCTCTgatagaaa
caaaaatattgaaaaaagaacGAACTTAAANNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGAATGTTAA
TCGATGTTACACAGTAACATTTTGTACAacatttgctatttttagaaaat
gttacacaaaaatgttaCCGAATGTTATCGTCTAACAAGACCTTAACAAG
acctttataaatttttttaaactttccaaaaaagtgtAATGAAGGATTTG
ACGTTAGATCCCCTTTAAAGCTTGACTTGAACCTGATCCCCTTGCAGCAT
TATAGGGTTGAGAGCACTGACAtttatccctggaccaagttactcaacgc
cagccaagcaaaataatatgatcggagtttttttgaaattggtacccgcg
gagagagcgctagatcaactttcgcttgtacactaatgatgtagcgccgt
ttgtcgttaggcaaagcttcaaacactacaatggcttttttgcgggtacc
aactttcaaaaaaacttcgatcaaagatggcggatatagctttgtCCAGG
TATATATAAAGACTTTAATATTACTCCTATTTATATACATTCCACTTTTT
TGCTTGTATGTAGAAACCATGTCCGTGTCATTAATTCACTTGAGTGTTGT
TTTCATATGGTTGCAAAAAAAAGAATGTTCACTTTCCGCGAATGAAATTc
aaactaccttatcggccaaaacttagtcggtcttaattttagtcggcctt
aattattagtcggccctaattttagtcacctcgtcaagatttagtcacta
agggccgactaatataTAATGAATAATAGCGGACAAAATAATGAATTGTA
GCGGACGTAATGATGTGGTATTCAAAAAAGTTGGTTAAGGAAAGCTTagt
tataaacttttaatttggcccaaatttttagtcggcccaaattttagtcg
cttcaaatttttagtcggaactaattttagtcaccaaaacaaaatttagt
cacttagggccgactaagttttggccgataaggtatattaaCATCTATGG
TTACACTTGCAGGTATGGAACGAGTCGTAGTCGTTAACACCATTGAGCCT
GCCCGCGAGGCGTTACTAAAAGGAAACGATTTCGCAGGTCGTCAAACAAC
ATCATTCCCAATGGAAATACAGAGTAAAGGATTTAGAGGGATTGGGTCTA
GCGATTTCACCAAAAGACATGTGTTTATTCGAAAACTTGCATACAAAAGT
ATGCATTTTTATGGAAATGGTTTGAAACGAATTGAGAATGTAGCTTTGAA
ACAGTGTGATTTATTGGTAGAGAAGTTGAAACAAGAAAACGAGCTACCGG
TACCAATGCATCAACGGTTAAGTAAGTCAATTCTATATAATTTTCTCGGT
AACTCTGAAATAGGAAGTGAAGGTATTTGTGATCCGACGCCTGGCTGAAA
ATAAGAATCTATCACCAGAATTCAAACAATGCACCACTTAAAACTAGATT
CGATATGTTATTATATGCCTATATATATGCCTTATTTTCCCTGACAGTCT
TAACGTTTCACTTTGTCTTGCTTGTAAAAGGTTGAAAGATTCTATTTAGC
CCATTTAGGCTTTGAAACCAATATGCTATAGACTAACAGGAGAGTCTAAC
GCCCTCTATAGCGTTGATTTTAAAGCCctaagggctagagtagaatcttt
aacctttctctggcaagaaaaagtgaagccactttgTTCCCATCCTGAgc
gcgcctagaacgcgccgcaatcatgacggcaaattgtatctagtggttcc
tttgtttttgaggactacaTCTTGCATCAAGCGTTTGCTTGATTTACAAT
TCGTCATGTCTATTAAGTACAGTTGGtgctctttaattcgattttcaagg
ggaatcggattttcatcgaataagagagcgtatCGAGCGTTAGttatgag
agttttttgttgacggtggccttcaatattttcgaataaCTAGAGCGTAT
TGAACAGAAGAAAGTCAAAtcagagagtgtcaactgtatgaaatttatct
tttttctaaCCTCTAATTTCAGTCAATTATGCAGCCAATATAAGCTGTCA
CTTACTGATTGGAAAAACTTTTGAACCAGAGGATCAACTTTTccagaaca
ttttaagatcaGTCATGCTGATATTTCAAGGTGTTTCACAAGCAAGTGAT
CTTATTGTTTTCATGCCATGGTTAAGACATTTCTTCCATACAAAACCATA
TAGAATGCTGTTGAAAGGTTGCGCCATTCGTGATAAGATCGTAAAAGAAC
AGTTGGAGTACCATGCACAAACTTTAGGTGAGAATTGATAAGCCGTGACT
GGCCAGGCCACATTCTTTTACAGCCAAAAGTAAATGTACTTTTAAATCTT
CCTTAGGTAAGAATCCGAAGGACGTAGCTGGCCAGGTCACATTCTTTCAC
CACGCCAACAACATCTATTAATTTAGCCAAattggagtttgaaaaggaaC
CGTTTTTATGTAAGAATCCATAGTCCATAGTTGATTTGACCAAACTTTTT
CACCGCTATTAACATTTACTAATTGAGCCAAATTAATTTGATAAACTCCT
CTTTCATaacaattttatgagaacaatgaggctcaaaattgctaaaacat
aagaaaaattcaagaaCAATGCTGGCGTAGAAATTGGGTCTTAAAAAGCC
TCAAATAGTTAAGgtactttcttttctttaaataagaatatgataagaac
aatttgaggctcaaagtgccagaAGAATAAACACGGTCGAGCCTCATTaa
aaatctaatgaaacaagcaatacttttatggacctacctggttatcaaac
taatcagtgaacattgaaacaatgaaacacataagacataactggtcaaa
atacaaaaaaattaagaaaatgaaagcatatctattaagagaaactatca
acactattgaaaaagatttttgaaaaagaaaaaaaaagctattaagcgct
tttctttataaaaaccactatcagaaacaaatgcacagcttaaataaata
aggtttccagaaaactcaaaccgtcgcactctaccgtgacattttcttct
gttagaaaaaataataataaaaaaacaatttggctaataacattgatcta
tgctcataaatagtgattcttatagataaagattggtttttcagccaaaa
aataataagtgtttacagaaaactcaaatcattaccctccaccgtgacat
tttcatcgtaaaaaaactaataaaaataataataataatatggctaagaa
cattgatgtattcttattaaaagtgattcttatagataaaaatgcgattt
ttgggCCAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNccg
tttttaagccgttttttggcccaaatttgcccaaaaaatttttttttcga
aaatcgggctccgtcacattcgagggtttatggtcatgcacctttgtacc
aaaaatcagaaaaaactaatgagccaatctcgagaaaagctggtaactaa
cacactaactaacgaacgaacatgggctaatttataggacctccacccca
ccggggtaggtccaaaaaaaggaatgtaattttgaaaaaagaactgTTAT
AGGCAATCTATAAGATTTAGAATTCATAAACTTCCTACCGTCCGTCGTTA
CCAATCATGGTTGGAACGAACCCAAggggaaaataattttgaaagtggaT
AAAGCCATGATGGCATGATGCAGTGACTCAGAATtctcaaaatgatcttt
taatTTATCCACAAAATGCTATAAcaccagtggcgttgtggcagggggcg
GGGGGACCACAGACACCCCAGCGGaacttttttgaaggggcgtcgaagag
caaggggcgccaaaacagattttttttaacaccccaatcttaaaaatcat
actttatgcgcaTTAAATTGcgccccaggaccaattttattGAGATAATT
TTGAATTacttgcatttttttttcactcgcttcgctcgcaataaatttaa
ttggtaacttctttgcaatctagctaatttacaagtttttttgcgTACAA
TATAGTAttgttaaatgaaaatctaactgcaccccaagaccaatttgctg
acaacaatattgaaatcataaaacataaattttttcgCTTGCTTCGTtcg
cattacacattgtttctttaagtttcttttcattCTGGCAAATGTCAAAT
TTGCCTACTTTgttttagtgatttagggtatcttggctgtcttggcagtc
gattttcaaatattttttagtcTGCACCAACCATGGTCGGGCCTGTTTTC
CCCTACTCGATATATCTACGCCACTTTGGAAAATCGGGGGCGccattcta
aaaaaattgacttttgcaACTGCAGAaagattttcccacaacgccactgt
aTAACACTGAAAGAATGAGTATTGACAAGAATTGAAAGTGTCTCTCATAC
TTTTTTCTCTTTACATTTAGATCCTAACAACACTCGAGATATTTTAGACG
AGTTGCTAGTTCAATGTCAAGATCAAGAATTTTTGAAGGAAGGAGATTTC
AAAGAATTCCCCATTGAAGAAATCTTTGTGATGTTTAGTGACTTGTTGCT
AGCTTCGATCGATACTACAGCATTGGTTCTTCATTGGGCAATCTTGTTTT
TGACACATCATCCCGAATACCAAGACAAAGTAGGAACAAGTGGACGGACT
ATTATAGATTATGTCCAGCTTGTCTACTCTTTATTTCGAACAAAGATTCC
GTTCTCTTTTAGGCTCGAGGTCTTTTATTCtaagtttttgataaaatcta
aaGGAAGTTTTTCAATATGGATCGATATGTATCAATTGTCAATGAGTTCC
GTTTGAGAACGTACCAAATAAGGGTACCAAATTCAAAGTTTGATATGACA
AAAGAATAGCTACCCAATAATTATAATGGACAAAACAAAGCTAGAAAAAT
ACACCTTCTCACAATTTTGCTGAAATGATCAAGCCTAGAACAGGCTTTTT
TCTCATTCCTGAATGATAAGTAGACCTTAAAAACTGTCTAAAGCTTTAAA
TATTTCAACAttcatgaaatattttctttttggaaaaggTATATGAAGAA
CTTCGGAATCTCAACCATGAGATAACGAGTAAAGATATGGGTTCGCCATC
TCTACCATACCTCCATACTGTTATAATGGAAACATACCGATTGGCAGCAT
TGACACAGCTGATGATTCCCCATAAAGCAATTGTGGACACCACGATTCAA
GGTATTTGTAATACTTTAtcagccctttttacaccggcccttattaaagg
gacattaaagcactgacgaaatttgtaaacaaaccgtatgcagcgggata
caaaatcaaaacaaaagtcacatgtcaaaataaaaaaacaaatatggctg
attttgattgtttcaattgttttacaagtttgttttggatacGTGATTTT
TATTGTTCTCGTTAATAACAGGTGGTTCAcgaaatgtttacattttacta
attttatgtccctttaaggtcAAAAGATCCCAAAGAACACAACCGTCTTC
TTCAACATGCTTAACATACACCAAGATGCGCGTCACTGGAAAGATCCAAA
AATCTTCAATCCTGACCGATGGATTGATTCCAAAACTGGTGAAGTAAAAT
CCGAGAAAAATCAAAGCTATTTACCATTTTCGATGGGTTCTAGAGCATGT
GTAGGCGAGAAGATGGGTAGAATGGATGTCTTTTTATGTATTTCGAAATt
attgttgaatttcaaaatggtgCCCGATGAAAACGACCCTCTACCGAGTT
ATAACAAAGGTACGGCAGCTTTGAACAGAGCACCTATCAAAGACTTTAAA
GTGATTTTCAAGTCTAGATAAGAGTTTCTTCAAGAAATTCCAATTTACTT
ATCAACCATTCAAGGCTAACGTAATTTACAAGGTAAAGAGTTTACATGGA
AGAATTTCGGTACCTTATCAGtaaaaaagtgacgaaaaataTACTTGGAG
ATAGAGTGTGTTATTGATAATTCTTTTTGAcgaatattttttatcaaatg
attttTGTTAACCTTAAATTTCTTTAGTATATTTTAGAACTAAATTTATA
TGGTTACCGTACTACTCGATAGATGATTTGTAACATAAACTACAGATAAT
GCATTAATTGCTCCGTTTACGCTGTTTTCCAGTTCNaatgtttacatttt
actaattttatgtccctttaaggtcAAAAAATCCCAAAGAACACAACTGT
CTTCTTCAACATGCTTAACATACACCAAGATGCGCGTCACTGGAAAGATC
CAAAAATCTTCAATCCTGACCGATGGATTGATTCCAAAACTGGTGAAGTA
AAATCCGAGAAAAATCAAAGCTATTTACCATTTTCGATGGGTTCTAGAGC
ATGTGTAGGCGAGAAGATGGGTAGAATGGATGTCTTTTTATGTATTTCGA
AATtattgttgaatttcaaaatggtgCCCGATGAAAACGACCCTCTACCG
AGTTATAACAAAGGTACGGCAGCTTTGAACAGAGCACCTATCAAAGACTT
TAAAGTGATTTTCAAGTCTAGATAAGAGTTTCTTCAAGAAATTCCAATTT
ACTTATCAACCATTCAAGGCTAACGTAATTTACAAGGTAAAGAGTTTACA
TGGAAGAATTTCGGTACCTTATCAGtaaaaaagtgacgaaaaataTACTT
GGAGATAGAGTGTGTTATTGATAATTCTTTTTGAcgaatattttttatca
aatgattttTGTTAACCTTAAATTTCTTTAGTATATTTTAGAACTAAATT
TATATGGTTACCGTACTACTCGATAGATGATTTGTA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00065171TCONS_00065171Clytia hemisphaericatranscript
TCONS_00065172TCONS_00065172Clytia hemisphaericatranscript
TCONS_00065173TCONS_00065173Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00065172-proteinTCONS_00065172-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_433supercontigscaffold_433:204259..212944 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.86	15.49	3.64	1.67	1.65	1.71	8.79	9.27	4.02	3.33	6.06	6.08	15.12	16.26	9.47	12.02	5.31	7.59	4.23	2.72	1.97	1.71	8.3	8.16	5.14	6.86	0.71	0.77	0.93	2.4