XLOC_040762 (gene) - C. hemisphaerica

Overview
NameXLOC_040762
Unique NameXLOC_040762
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_428:384045..394345+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_040762 ID=XLOC_040762|Name=XLOC_040762|organism=Clytia hemisphaerica|type=gene|length=10301bp|location=Sequence derived from alignment at scaffold_428:384045..394345+ (Clytia hemisphaerica)
gaCGAATTTTCGAGGATAGCTAGAGACATTGTGAATGCTATACCAAGCtt
gaaaatcttcaaagaaaaaagtaagcTTTTATGTATTTGTATGAAACCAG
CCATATTACGCACACTGATACGTACCAGTAGCAGAAACGTGCAAATTATT
CTCGTTTCCAGATCAGAATTTTATATcacaaaatttgaaacaaaaattcc
TACCACAAAATTGAAAAGAAGGACTTGGTGCTATTGaaactttctgaact
ttgaagGGAAATTCCCTCTTCGAGGGTTTCTTCACACCCCCTTCTTACAG
ACcgccttctcacagacccactgggaccccttttcacagaaaattggcca
aaatatcgttcccgTAGGAagattatactctaatttttgtccctactgaa
aataatcagttaAGAAAATCCTCACTTCAAAGTATTGTACtcttttttcc
atccccactgagttttctgacttgaaaacaaaagaatatgaATCCCCAGT
CATAAACATTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTCCAAG
ATTTTTCGGTGTAGCTCTTGAtcgatggaacagcaatttatGCATTGGTA
TTTTCGATAGCCTTTATTCAGGAACATTTGTATTTGGTAAGATGGAAGTC
CTGTGCATGCATAATGCAGGGTTCGTTGACATTTATGACATTCTAATCTC
ATTTTGTCGTCATCTTTTATGCAATTTTGTTCTGTACATCgatttgcaac
attttcgatttCATCTCTTGTTGAAATTCTGCTAGGCGATaccgtttttt
gttgaaatttggtcgtttttttcatgtttttgtattttattatgGGAATa
taaatccccatcgagttttagtccgttattttcatccccactggctgaaa
aaatcctaccgggtctgtgagaaggatgTGTTTCTTTAGCTATGAAACTA
TTGACGAAAAAGGGAATTTTTAGAGTGGACATTGTTGAGTTTTCTAGCTC
TAGATTGGCTGGGGCTGTAACAGTACTTCAGGACATCATATCTTGCCGCC
GTTCGTGCAAAATAGGTAGATTAGGTAGATTAACACGAAGCCAAAGGTTT
TCTTGAACGCATCATGACTAAAAATGAATAAGAAGAAATTGACACTTACT
AAAAACACTGTGGCTGAACACACAAGTACACGTCAACAGATACTCTCAAC
TAAACACTCACAGCTACATCATATAAATTTGTAACACATAAGACAAACCT
CAAGGGACGAACACGTAACAATACAcacaatacaatacaatacgATACAA
TAAACAGCTCCCTAGACACATAATATACGCAATACACGTGAGACTATAAT
ACAAAATAATAATTAGGCAATTATGGATTTATAATTAAGGAGGCCTTCCA
GTGTAAATGCGTCCATAAAGTCCCATCAAATGATAAACTAAATACAATAA
AGATAATGAAAACAAACGTAAAAACAAAACGACAAATTATCTGCACTTCG
GTAGTTACATCATACGCAACCAAATAAGTAGTTTGTAATTTCTGACAGAA
ATCATAGAAATGGAATAGAAAAAGTGCTTCTCTGATTACCCGAAATGTTC
TGATCGTGTCTATTGAAAACtcctttgttttagctttaatttggtcgtta
caaaaagttcagaaaaaaagGACTTGCCATGCAAAGAGGGCTGGTTTCTA
TATGCTGTGTTTATAAAAGTGGttttatgtttttcgtttttgatacatta
ctttttaaactttcagtatCCAGTAACAAATTTTATACTTActtgtagtc
tgaaaaattctcatcacaatgataccaaattatttctaaaaaatttgata
gagattcatcaaagacagatttgatttcttattttcgtgCACTTTAGCTT
TTAATCTAATTATGCGGTCATGATGCCGTTATATCATTAGAATCGCTAGA
AAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
TTTAGCTTTTAATCTAATTATGCGGTCATGATGCCGTTATATCATTAGAA
TCGCtagaaaattctgagcaagaaaatataggtatcttttggtataaaag
aggtttccccaaaatataagcccctaaagtttacgcataatttgaactga
aacaaaagaatttcgccATACCACGCTAATGAtacaacttttttaaagca
acaacaaaagaaatccattagCTCGAAACAAACCCTCTCAAGGGCAaagg
acctggtatatgacgagccgtttgtcTATTGTTctgaagaagctgttttt
ccatctctttacattcctctgctgAATTATCAGTCaccattttatgactt
tttagaTTTACTTGACAACCTTCGGAAAGAGCTTCAGGAAATACACCAAA
CAAAATAGTAAGCAATTTCATTAGATATTTATCTGTCAGCCATGATAtat
ttagtttttttgttttcacaagACTTTGGCCGAGGCTCAGTTCTCGTTTT
TCATGATTTCCAGGGGCTTAAATTTTCTGAGAATATTTTGATATGCTTAC
ACTTATTGACTTacggccggtctccactttcgcgcgaaatgggcgacagt
ttttttcttaaccttatTTGCCTggagaaaacattacgtcataaaaatgt
ttcgcgcgaacaaaaaaaaagttgaaggaaattctacttttttcaaccgt
tacgtcagatttgACCAATGgacttgcttcatttttcaaccgaccaatga
tcTTACAAAAAGGTTTTCGCTCATTTCgcacgaaagtggagaccggtaTT
TAAAATGGGCTTGCAATCagtatttttttaatcatttatgAAATCTTAGA
CATGGGccattcttaatttgttctcagGTTTTGGCCAAAACAAAATGagc
ttcttataaaattgttcttataaaaaaatactattcgCTCTTTCTGATCT
GTTTTAacggctctgaccatagtgaatttttcataattgccatgtagaaa
atgtatttttctgaCAGATCTACGCAGCAAAACcatgacatgttatacat
tttctgttaggccaactattcctgaatctaaaaaagtaaaaatcacgatt
aaaaaatttgatgaaaaatgcaaagacaagtatttcaactttgaggacct
tattttcggcgaagaaaaacattttgaaaaagtttttgcgtaacttaaaa
tagattttcggaaaatttttgtagaaGCTTCTTCGTCTCAATATCTTAAA
AATagttgtttttgaccattttttcaaCCGAATTTTTCGTACAAaaagag
tcataacttttgatacatcaatttggaaaactttccgAATTTTTTTAGAT
AGTTCAATCTTTTGCagacgatttaaaaaaaattcgaagCAAAAAGGTTG
ATTAcccattttttgtaaaagagggtaacataacattttaaaataaattc
acAAACAAGTTATAAAGACAGTTTTTTTGTTAAAGGTGTCAAGGAACGCA
AAACAAAAGTCCTATCTTCAAATCTCATAACAAtttttttgactatggtc
agagcccttaagtatgACATTATGGGCAGAATAAAGTTTTTTAAGTTGac
gaaatatttattttataactttctatcaaaatataacattttctcgTTAC
AGCGAACTGAAGATTATTCCGAAATTCGACACAGAATTCTCTCAAAATAC
AAGTAAAGCTTCAAAGTTTTGTATTTAGATAAGAGAgtatattgtttgct
tactcatcaattttgatttaaaagcttaTGATATAGAATTGTCACGGAtt
tggagcaagattggtcagaaagaggaaaagaaaaacatttttttgcttat
atcagcacagtatatcaataggcagacactgtcctgatatgaaacgggaa
cactaagtaaaaataaaacctttgatATCATTATTTGTTTCAAAAAACTA
TTTTGATGCTGAATAAATACAAATTCTTCTCGAAAAAACAAGTGTAGGAG
CTCTCCTGGGAATGGCATGGAGTTCGGTATGAGTCAGCCTAAAAATACCT
TACGCCGAAAAGCAATTTCCCCTGCATATTCATTACCAGCCCCCTAAAAA
GATAAGCTAAGGGTTGATATGTTTTTTAGTCACCTTATACGTGCATGTAT
TTGTCCTCTTTCAAAGAATAAAGGANAAAGTTTTTGCGTAacttaaaata
gattttcggaaaatttttgtagaaGCTTCTTCGTCTCAATATCTTAAAAA
TagttgtttttgaccattttttcaaCCGAATTTTTCGTACAAaaagagtc
ataacttttgatacatcaatttggaaaactttccgAATTTTTTTAGATAG
TTCAATCTTTTGCagacgatttaaaaaaaattcgaagCAAAAAGGTTGAT
TAcccattttttgtaaaagagggtaacataacattttaaaataaattcac
AAACAAGTTATAAAGACAGTTTTTTTGTTAAAGGTGTCAAGGAACGCAAA
ACAAAAGTCCTATCTTCAAATCTCATAACAAtttttttgactatggtcag
agcccttaagtatgACATTATGGGCAGAATAAAGTTTTTTAAGTTGacga
aatatttattttataactttctatcaaaatataacattttctcgTTACAG
CGAACTGAAGATTATTCCGAAATTCGACACAGAATTCTCTCAAAATACAA
GTAAAGCTTCAAAGTTTTGTATTTAGATAAGAGAgtatattgtttgctta
ctcatcaattttgatttaaaagcttaTGATATAGAATTGTCACGGAtttg
gagcaagattggtcagaaagaggaaaagaaaaacatttttttgcttatat
cagcacagtatatcaataggcagacactgtcctgatatgaaacgggaaca
ctaagtaaaaataaaacctttgatATCATTATTTGTTTCAAAAAACTATT
TTGATGCTGAATAAATACAAATTCTTCTCGAAAAAACAAGTGTAGGAGCT
CTCCTGGGAATGGCATGGAGTTCGGTATGAGTCAGCCTAAAAATACCTTA
CGCCGAAAAGCAATTTCCCCTGCATATTCATTACCAGCCCCCTAAAAAGA
TAAGCTAAGGGTTGATATGTTTTTTAGTCACCTTATACGTGCATGTATTT
GTCCTCTTTCAAAGAATAAAGGAACTTTCGAATAATAGTTCGATCAAGAA
ATTTATCCTTTTACTCATATACATTATTATGACGATGGATGTTTAGTTTA
CTTTTACATTTTCAGATGAAGACTTAGTTCCAGCATCAAAGAAACATTGT
AGTTTTGAAGAAATGGAAGAAGTCGACCCTAATATTCCACCGGAGGTTTG
TaaagggctcttccagaaagttTCTGTACATGGGGAGTGGATGATAAAGT
ctccgggggtagtgaaaaatctacaaaatttgtctTGTCTGCTgggcaaa
cttgctctgtttggcggtaattttgctctgtttgaggataattttgaatg
ttccgggggtcaactgatgcttgtccgggggtcaaaactcggaggtaaat
ttccaaaaattgttATATTCTCCACCCcctatattcaaattttttctgga
aaagtccaaAGAGCTGAAATAGCCACGAATAAAAAACGGCTGGTGACTTA
CAAGGCCTACGATATTATCTGGCAATCGGATGACGGAAGGGAGAAAACAT
TGACCTCTAATATGCCTTGAAATATGCCTTATAATACCCCGCCTCGttat
tttaaaatactttcaatAGCTTTATTCCTGAGCAAAATCAGTCTAAAATT
GGGCCATTTAGGCCCATTTAGGTCCAATTTTAGACTAATTTTGCTCAGGA
ATAAAGCTATTGAAAGTGTGAATCGTGATATTTTAAACTAACGAGGCGGA
GGGGGAGACGCCCCAGTTAGCGCGAGTCCTAACTTAACTTGTAAAGCTTA
TTTAGTCCCCCCTGAAATGTTTGAATTGTTTGCATGCTATAAATCCTCGA
ATGAAAACGGTTTCTAGTATTCGAACAGTTATTGATTCAAACAGTTATTG
AAAAAAGTCGAATCCAATAAGCTTTAAAACTAGAAATTCATGACAGTAAA
TAAGTCAATCAAATGTCTTATTTAGGCGATtcggaaaaatataaaataat
tttttggcaaGAGTAGAAATCGTCTATAAGGAATAAATAACGATTTTAGT
CCAAAGTTTCTTTCTAGTAAATTAGTTAAAAGGGTTACAATAGGGTANTT
AGTCCAAAGTTTCTTTCTAGTAAATTAGTTAAAAAGGTTACAATATAGGA
TGTCAGGGGTGAAGGAACATTTGCataggagagcagatttaaaCGACATA
GTAATTATGTTTTTATACCACGAATAGGCAAGTgctttgtcataaaaatc
tgctctcctgtGCAGGTCGTtcttcacccctgtctacgctactgggtttg
aaaattgaattaaaggatttcgttttcaaaataatacACCTTTGACATTG
TAGACGGAAAAGGTAATGATAATAACAGCCAATCAATATGAAGAAAAGCC
ACCTTCGATCAAACGTATCACGGAACAAGAAACCCATTTCACCGCCCACC
ACGCCCATATTCATCAACAACAGCTTGATTTCAACCAACAGATATTACCA
AGCGTTTTCCCTGAGGTTTGTATGCGATATGCAGGCTATTAATGGATAGC
TAGATGCTTTCTAGTGTTGTATGCACTGATTTCtaactaccgggtgcgcc
acaaaaaagtttccctctttaaaactaatttttctcaaaatctaaaaatt
ttaaaagaaccttCCTAATTCatgagaaagaagaaagatcaacttaaatt
ttgatgggttatatattaaatttgattcattagatcaaaagttatgctca
attaaataaaaaagttactttctgaaagtgctcaaaaaggttaaaaatca
ACCTAACAAATTAAACGGAAGCATAATTActtgatacatcagtattttcg
ctttagtcattaaaaatgataattagctgtctaaatgatcttttgttgta
taaaggaaggtttaatttcaacaaaaggcagaaaattcgtcgaaaaaggc
caaaaatccagtaaaattcataaaaatacataaaatatgGGTTTTGCGGT
AGATCCAGTCTTACTATACTTTATCCAATCTAAAACCAAAAATGTGagga
aaatttgggtaaaagtaaataaagtgattttgattaagattttaaaccct
tttgacccttcagtttcgaaatttatgtttttaattacttaaaaatgttt
ttaattatgTAAAGGCTATCGTGATTGCCaattttgaaatggaaatttgt
taggtcgattttcaacgtttttgagcactttctgaaagtaacttttttat
tcaattgagcataaatttgatctaatgaatcaaatttaataaatgaccca
tcaaaatttaagtttacctttcttctttctaatgaAATTGGAAtggttct
ttcaaaatttttagatttctagaaaattagttttaaagagagaaacattt
tgtggcgcacccggtatttgaCTGGATCTCGCTTCCCATATAAAAGGAAA
CGTGTCCAAATTTAGAGCTGACTAGTCAgtcatcttgttttcaattctgg
tcgTGAACAGCGCGATTTGATATTTGGATATttgaacgttcgaaaatcta
gaAAACTACATTGGGCCTATACAACTGCAAAACTAGACACACTTCCACGG
GAAATCTGTGAGCAGTTAACCTATTTAGGGATATAATATCGGTGGTTttt
atgtttgttttgaaaCCTTGTCTGTTGTTGTCCTTTGTTGCACGAtgact
gttttaaatttctttaaataattCTTTAACTGTAAACAATTACTTAATCA
CCAGCATCATTTGGAGGATAGTTATCTTTATTATACGTCCCTCGAGGCTT
TTGTAATTTtctatgacgtcacatttattGTCCTTCGGGAATCAAACTTT
GATTTATAAACAGCATATTGAAACGTAGCTAATTTGATACTCGTCACTGT
TATTTATGAAGACTTATGAGAGGAACATAGTGTTTTGATGTGGAAAATTT
GATATATGTTTTGAAGATAGTTTTATAAGCCGAAGGCTTTTTTACAGACT
CAAATTCATGTTTGAACACAAATCCTTTACATTAACAATTATCATAATGT
ATAGCACCTAAACTCTCCAGAGTTCTCAATCCATATCTCAAAACTTTCAT
ATAAGAAATCgagatgaaaagattttttggcttctagcctttttgttgtt
ttatccGTTTTAGCCAATGGAGGTAACAAGTCAAGAAACAAACAGCCGAC
CACAATTCTTCTTTACTAACGAACAATTGAACAGCCACGAACCAATCAAC
ACCAATTTCTTCGCCCAACGTCAGACCACATCTTCTTTAGAAGAAGAACG
ACGAAATTACACCGACAAATGGACGGCGTCCACGTTGCTACAGCAACCGA
TAAGTTCATTACGATGTAATCGACGTCGATCGAGTCGACAGACTTTCGAA
GAAACCGATTCAAATCGATCCCAAACCGATTTACTCGATTTTATCGATAA
CATACCGATCGATGATTTAGAAAGAAAGCTATTAAATCGCGGTAGTGTCC
ATGAACAGAGAGCGGTCGCCTTGTCGCCACCTGGTAGGCTACCTGCTACC
GTCAGTAGACATCATATAGCTTCCTTGGAAAGACCAAAAGTCGGTAGCCC
ATCTCCTCCAAAAATGTACCGTATGAATATGTTTTAAGTAGTTGGATCGA
CGCATGCGCGCTTTGGTTATTTGTCAGCTCTTTGGTAAAAGAAACAGGCG
C
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00065016TCONS_00065016Clytia hemisphaericatranscript
TCONS_00065017TCONS_00065017Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00065016-proteinTCONS_00065016-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_428supercontigscaffold_428:384045..394345 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.53	2.24	1.41	2.18	2.91	1.84	2.16	2.94	0.8	1.1	1.26	0.42	0.92	1.62	2.71	1.61	1.48	1.07	0.61	0.64	0.79	0.75	2.09	2.3	6.59	7.21	2.1	1.68	0.69	1.3