XLOC_038831 (gene) - C. hemisphaerica

Overview
NameXLOC_038831
Unique NameXLOC_038831
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_361:1403345..1412299+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_038831 ID=XLOC_038831|Name=XLOC_038831|organism=Clytia hemisphaerica|type=gene|length=8955bp|location=Sequence derived from alignment at scaffold_361:1403345..1412299+ (Clytia hemisphaerica)
GAAGATTAAATTATGAATCATTTTTGTAGAAAGTTCAACAAAGTGTCTTT TGTCTTTCCTTGCATTGAAACTAAACACCTTGCTTCTTTCAACACCCAAA CAaagaacatagaaatataatttCACATTTTTATTCGAGATTTCAATATA AATAGATTTGGTTGCTATATGAGCCTTGGTgtgaaattatttctttttta aaataatatttttttctctgatTCGTAAGGTTGTTTCCTAAGGGCGAAgt gcttttttaaatgtttggTCTATCATTCCAGacgtgaaaaattaaaagaa acttAAAACAAAATAGAGGAGTTGTTTGAAGAATGGATTATGCATAATAA TACTCTTGAAACTCATTATCTGTATCAGTACTGATAATCTTAGTTGAAAC AGACAAGAAGTTAAAGGATAATGCAAGCGAAAAGTATATTTTACAAGTAT ATCCTGCAGAGAGTTTGAGATTTCTATTAGCTGGTACTACAATTCAGACT TTGATACAGATTGATAAAACATGAATTTCGTAACAGGATGTGagatttaa attaaatttctgTTCTCCGTCGAcagaaattaattaattttggtGAAGGT TGCATAGACTGTGTATAGTGAATATGGAATCGACGTGCTGTGTTATTGAG CACAAAAAACCTAAACATCAGATCTTATTAATAAGGATAAGATGCAGTGA TTAAGAGAAGAGAATTGTTTGAGTGTATCGGAAATAAGGAGTACTGTCAT GTGTTGTAGAACACAGTTCCTGGTTTTAACGACTTGCTTGGTTTATCTCA TCGTCATTAAGGATTTCTTGAAGTGGAAGTTGAGCTGACGGATATAGTAC CGAGACAACATATCATGATTTCAAACCTACGTGGTTCAATTTTCTTGTCA TTCATTCACAAGAAATATTGAAGGAAAGTCCGTTCGGATATTTTGAAAGA TTATTTTTCATACTAAATTATATTATGagattttgtattttcttttccAA ATGAGTGTATATTCCTAGATCCTTCCCTCTTGTTTTGTTTATAACTTTAC CGATTAGTCATTTTCTACTGTACTATGATGTTACAAataatttttgcttt tgttttcatttagaAGGATACCAAGAGAAAATTAACAtgaaattaaaagt ttaaaaacaacGCATTATAGAGTTTACAAGTTTTTATTCAAGATGGaggt ttttgtatttttattgttgACATGTGTTCAATGTTTATTGGTATTTGGTG ATGTCTGTATTCCTGCCAAACATCGAAAATTCACCAAGgaggatttaaaa aaaggtAAGGTCTTTCTCAGTTTTTGTTGTACTAGCATTGAAGGTTTTCG TTTCATTCTCAAAAAGTTTAGCTAAAAATAACGACATCCTTTACTGCAGT ATTTCTTTTgaataatacacgtttttttataagaacatccaaattttttg aagcctatggatgttctttacttttctgagttttaagcctaaaaatgttc ttattctcTCCATTttctgagcatttttgtccattttcctaaggaattgg gtgttttggagtccacaaagccttaaaatgttcttaacttgttcttaaga ttttggccatccaagccttatattcttatatagtttgttattataaaaaa ggtGTAGTCAGGGTCAGTTCTGAGTTGGCCGAAGATTTAATCCAATTTAA ATCCGAAGGTCAGACATGAACCTTGTTGATTGCATTCTCAGGTCTTTCCT TTGAAAAGTATTATATTTTAATACTAAACCACACGAAAAGTAATTTTAGA CTGTCACAATTAATTGTTTTGTCAGGTGTTATTTTCATGCTTcaacaaaa accaaaagtgcCCCTACATTACATAATAAGAATAAAAGGTCAACGTTATT TTACATCCATCCATCATTTTGTTTTAGATTTCAACAcgaaagaaatttca aagagtGCAGCATTCCAATCGATCGTGACCAAcgaaaaaacaaataaact atACACCGGAGGGAggtatgttgttgttgttgttgattttttctttttgt tcatgAAGGAGAAATACCTGTTGATGACAACTGATAGATTTCTGAGATAG ACCTTCCCCAAACAAATCATAACGGAGCTTCTCTCGTCTCACGAATGTAA ATCCCAACAATCGCAACTGAAAAGGAGATGATCGCTAAAAACATAGCAAT CAATGATTTCCATTCCAATTCATACTAAAAGTTGATATCCTTGACCAACA TTTTTCTACCAACTTTTAGAAACTCCATCACCGTGTTGGATGGAACAAAT CTCAACAATATATCTCATATATCATGGAAAGTCGACAACGAACGATGTTT AAGCGAAGGGTTGGTACCCAAAGAATATTGCAATAATCACGTGACATTAA TCAATTTGTACAAAGACAAAATCGTTGCTTGTGGTACTGGCTCTACGAGG CCGGTGTATAGAGTATTCTCACAAGACAGTTTAAACGTGACAAGAGAAGG AAACCGACTTTGTGCTTCACCGAATCCTGAGCATCGAGTCATCGGTCAAA TCACTTCTCTCGGAGAAATGATTGTAGCGACGTATAAAGATCAGAAAGGA CGAGATTCAGAGGTCCATGGTAGTTTTATGCCAGAAAAATTACCAGTATA CAGAGCGAAACTAAAGACTGGTGCCGATGACGTCAAACCAAGTGCCgatt tcattaaaagtttctacATCGGGAATAGCGTTTATAAATTCTTTATTGAA GAAGCTGAGGAAAATGGGAACCAACAAACGCCCACCGTTGGGCGGTTTTG CCAAACTGATAATGGCGGACCTAGCTTCATTTCCAACAGATTATGGACAA CGTTCAGGAAAGCTCGTTTGAATTGCTTTTACAACCGTGCAGACAACAAG ATGGTGTTCAGACATTTAGGTAAGCTGTCTTTCTTCATCGcgaaaaaggt gtattaaaaacaaaacttgaaGGAAACAGAACTAGGATCTTTGCGTGGAC GGTTACTAAACTCAAAGATACCAGGAAGAATCTTATGTTTAGAGAAggaa atatatttgaaatttaaaataagcGATCTACATACAGTTCGTAtataatt taaagaaagttaagCAAAACCTTCTAATGATTAAGAAAGTCTCACTTCAA AAACCTAATACCATCAATTTAACCATTTTTCTCAACCATATACTACAgac ataaaaaaaacaagcacTAGACTTAGGTTATGAATATCATCTCTTGTTTT TAGTCGATGTCGACTATGACGCAACCAAGAAGATCTTCTATGCTATCTAC ACCATGACAAAACATGAAAGTTTAGCATCCGCTATCTGTACCTTCAAATT TGAAGATTTGCAAGAAGCTTTCTCTGGTAATTTTCTGGCAAAGAATGAGA ATAACAAGGAATGGAATGAAattcaaaatccaaaaatcttttACGGGGTA AGAAGACATTTCTAATGAAATCATTTTCGCTGTCCATTTAAAAACAGGAC AGCTTTGTAAATCCTTCTTGGTAGGTTTGTATAAGACAATACGTCTTTTC GACCGTAGGCGCCAATTATCGCGTGGGCGtctttttgtccgttttaccac cctaaaaccatcccagtctttttttttgcacctatagacaatagaaaaag gtgtcaaaaaagggttggatcgagtttagaggGATGATTAAATAATTAAG AGACATGCGCCTGACCGCCGGAAAGGTGCATTTTCGTACATAAAATAACT AAATAACATCTCGTTTCAGTGcaaagtaaacagaacgaaattGTCATCTT CGATCAATCCAACTTCGCCTGGCAAAGAACCGACCAACAGTCTAAACCTG GAATCTTCAATGTTCGTCTCATCACATCGAATCATGGCTAAGACAATCTC AACTCAACCAGACATCTTTCAATACATGAAACCAGTGACCAGGTATTTAT GAATGAAAGAAGTATTCGAAACACTCTCAGAAACGGGAATCACTGAGAAA CCAAAAAAGGGGTGTTATAGTAGCCTCATTTTTTTCACATCTTTCATATC CGCTTCTCCTAAATTCCCAAGTTTTCTCATTTAAATGGTCTATATTCTTC GTGTGCACAGATGGGTTTGATGGCGTCACTTTGGGAGTAGTAAAATGATC ACTCGTTTCTGTGATCTTATGGGGACCTAATTTATCATTTTAAAAAGTTA GTTTTCTTCTGATGACATTACAACATAGTGACTTTCTCACTAGTTCCAGC AGAGATTTCATTTCAGATCTATAGtcatcaaccaatcagattgcgtaaac ttcattttcttttgttatagaTTTTCCAAGATCGCCATCGACCAATTTTC AGGAGAAAATAAAGCACAAGAAACCCTTCTCAATATCATTGATGGTGAGt agatattttttaaattgtctggAAATGTCTTCGCTCATAAACAAATCTTC CTTCCTTGCAAAGTTATCAGAAATATCATATACTATAAATAATTTCGTGT TTGTAATTAGCAGAAGCAAACTTTAAACAGGGTGCTCTCATTTCTTGCTT CACAGACCAAGGAAATATCTTCACATTACACGCCAACTTGGGGAACACAA AAGAATCATGTATCATTGAAGAAATTGCAACTGGAATGGAGAACCCAAAG CTTTTCCAAATGAACCATAAAGAGGTAAGTGAATAACTTTCACTGCATTC CAAGAACACTTTAAATCCTTACTCCAGATATAGTCTTCAGTAAAATTTCA ACAAGATAATCAAGAACAAGTCCATTCCTGGCTTTACTcactcttttttg ttgtttagtAAGACAACATCTATCTATACAGTAGTTGACTGTTAAAGTAT TACAGTTGATTTTCGCTAATTCGATCTCGAACGGGAAATCTAATTTGTta gaattacagagagattcgaaatAAAGAAAGCATTATATGAAGACTTCTCA TTAACTGGGATTCAAAaagagttcgaattatagaaattagaaagattcgg ataataAAGGTTAGAATCAACGAGTCCACTGAATCACTTCAAGCAGAGTC AACATATTTGAACAAAGTGTTTATGCTATGTGAATATGACatgcttcttc ttcttttcttacAGCGTATGTTATACATCACGACGTCAGATGGTAGCCGA CTGATGACGTATAATGTTGATAGCTGTGCAAGATACAACGGTAAAAGGTG AGTTACAATGATCCATGACTTGAGTCTCtagtgaaaaatatttgatggtt AGCAGTAATGAATATATGTTCGAGGAAGGAGAAAATCATATTCACTTCTT GACCAATGTAACTGACTGATAATGAGAGTGTTTCTGTTGATATTTTGATT AACTATATCCAATATTGCATCAGGCAAAAAAAACTTGCAAAATCAGCATA GAAAGAAGAAATCTTTCTTCGTTTAAGTGCTAGATTCACCTACGTCAAAA TTgatctaaataaaaaattcattgTTGAAAGTGGTTCAAGAGTTTGGTTC CCTTGTGCTATGCGAATGGTTCTGGCTTAGTTGAAGTTAACTTTATTAAC TCATCATCTTAAATGTTTCTCTTTTTGCAGTGATTGTATCAGTGCACACA ACCCGAGATGCGGATGGAGCATGCAAACATCTCAATGTCTTTCTGTGAGA AGTAGCGGGAACGAAACTTTATTGCAAGATCTCAACAAATGTCCGAACAG ACTTGGTAAGAACGGATTTGTAGGGCATCTAAAGGGTCGTATCTTCTGAA ATAAATGAAAAGGAACTTTCTCAACGTAATCGGAAACATGGTGAGAATTA AGTTGGAAAGCAGCTCGAGAGATACAttatatcaaaattcattggaGAGC ACGAAGCAGAGATTGTATTTATTAGACTAATACTAAACTAGCATAAACCT GAAAAGATTCATTTTTGACTGAAGCCTGTCTGAAGTCAGAAATGACTCAA CgacaagatgaaaaaaaaaactttgttatGAAACTGAAAGACaataattt tcatcatttcagACATCTTCAGCGCGTGGTCTTCATGGAAAGCTCAAGAA CAAGAAGGAGGTCAAGAAAAATATTGTTTAGTTCGTCACCGGCAATGTCA TTCGTGTGATCTTAAACTTTGTGACGTTGCTTCTACCGAAGTCATCAACT GCACAGGTTGGTAAACTTATGCTCGAGAATCTTTCAGGTCCTAAACGGAT TTTGCACTGCACTGTTACATATGTTTGGTCTTTTGTGTACAATAAAAATC TACACTCACTAAGCAATCACTCTATGACGACATATTATTCGTGATATTTA TGACGTAAACCAAAACAGACTGGGTCTTTGCTACTTACTTTAAATTCAAA TCATAAAACTAGTGGCAAACGCTAGACCTTTATGGGTGCTTCCGtacaaa acattacgtcataaatattATGAACAGAACTTTCTACTTGTTTTATAGCC AAGTTTAAACACAATCTTAACTTTAGTTAATTTCCTCAAGTTTTTGTATC TGAGTTATGTAAGTAAAAATCATTCGACattatttctattcaatttcaGC AAATGCTGTCACTGACATTGACCGATGGCTGAAAGAAGGTGCAATTGATG GATCATGGTCAACTTGGCAAGAATGGTCCGAATGTGGAAACCATGTCAAA TGTGGAAACGATACTAAGATTCGGTACCGGCAATGTGGATCACCAAAACC AGCAAATGGAGGTCGTGAATGTATTGGAAGAGATTTCGAATGTACAACGT GTCCGAAAAAGAAAGGTAAACATCTTGTCATGATTTGAATATGTTTATTG GgtcctaaaatcaaaaaattgcatCATGGGTTTACAAATAACTGctgaac atttttttgaaaccaactagtagggggaattttgttcgattttttggaat cgcttgactgttttgttagaagcacttgttatacatttttggaaaaNTCA AATCATAAAACTAGTGGCAAACGCCAGACCTTTATGGGTGCTTCCGtaca aaacattacgtcataaatattATGAACAGAACTTTCTACTTGTTTTATAG CCAAGTTTAAACACAATCTTAACTTTAGTTAATTTCCTCAAGTTTTTGTA TCTGAGTTATGTAAGTAAAAATCATTCGACattatttctattcaatttca GCAAATGCTGTCACTGACATTGACCGATGGCTGAAAGAAGGTGCAATTGA TGGATCGTGGTCATCTTGGCAAGAATGGTCCGAATGTGGAAACCATGTCA AATGTGGAAACGATACTAAGATTCGGTCCCGGCAATGTGAATCACCAAAA CCAGCAAATGGAGGTCGTGAATGTATTGGAAGAGATTTCGAATGTACAAC GTGTCCGAAAAAGAAAGGTAAACATCTTGTCATGATTTGGATATGTTTAT TGGGTcctaatataaaaaaattgcatCATGGGTTTACAAATAACTGCTGA ACATTTTTTGAAACCAACTCAATGTTTCTGGAAAACCTACAAACAGGCAG CACTTTGAAAAAACCTTTGTTTAAATATTCATGCCTCAAGCATCTATCAG CAAGCCGTTAAATTCTACTTGAGAATTCAAACTAATTACCACGTGATTTA ATCTCTTTAGAAATCATCAACATCATATGGACCCAGTGGTCAAAATGGAG CAATTGCCCCGACAAATCGGTCAAATATGAAACACGTGCCCGAACATGTA GTAAGCCCGGACAGTGTAACGGTAAAGATACCGAAAAACGAGATTGCCCG GAAGAGGGTGTGGCATTTGGTGAATGGTCGAATTGTAGTTGCATGCAGAA AGTACAACATCGTTGTCCAAAATCCATTGTTGGGTGTGGCACGAACTGTC CGCGAATGGAGCTCTGCCAATATCAGACTTGTGAGCCTAAAGGATGTCCT ACAGAGAAGCCACCGATAGGAGTGGATGAAAGTGTGAAAAATAATTCCAC TAAAAATGAAACTTCGCCATCAGACGGTGGCAAAAACTCTACAGAATATA TTGAAGTAGTTCCATTAACACCTGCTCCGAATACAGGTCCAATGGATAGT GTCTGCAAAGACGGGTACACCTTCCAACTTGTCGAACTTATAAGTATTGG AGTTGGTATCATAGCTAGTTGCTTTGTAATTGTATTGACTATTGTCTTCT TAATGATCAGGCGCGATCGTAAGAAGAATAATTATTCGCCGAACCCAGTA AGGAAAACTAAATCACAACCTTTGTTGAATGAAGATGAAACTGATACCCT GGAATCGAACGCTTGAGAGAGATGGATGGAAGATGAAGAGGTGCAGGTCA AAGCACCGATAGACAAGGTGAAGATTCCAAAAGATGACGTCGAACGACGA AAACCCAGCGAAAACCGTTGCTTGGTAACAGCGATTAAAATGTCCAATAC CATAGACAGCGTTGTTACTGATAATAGAAAACACTCGAATCTTAAGCTTG CATTCAAATTTTTACACTGTGTGTAACGAATACAGCTATCTGATATTTTC CATAACATCTTTGATGAATGAATAAGAAAGAGAAGATGAGAGAAAAAAGG CTGGATTGAAAATACTAAGCTCTATACTTCAATCACAGTCTAATAAATGA GAGAAACGTTCTTCGAAACCTTCCACATTCGAATGCAGACGTCCTTGGCA GCTTCCACAATGGTATGCGATGGCGTGATGAAACAACTTTGTCCAAcatc aatgaaaaaagaaatacatTAATGTTTGGTTAGTGAGTCCTAAAGGGAAA TCAGatacaatttttaaagaaatttttatgaccaaccaagttttcttttt gtacaGTTTTTTTAAACGAGAtgtatttatttaatttttattgccaaaat attggaaaatggATCAAAGACTATTCTCGTCATAATTTTAATTTCCTTAT TTTCGAAATCTTATGTCCGAGCTGTCCATTTCTTACTCCTTTTGGGCAAC CAAAG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00061931TCONS_00061931Clytia hemisphaericatranscript
TCONS_00061932TCONS_00061932Clytia hemisphaericatranscript
TCONS_00061933TCONS_00061933Clytia hemisphaericatranscript
TCONS_00061934TCONS_00061934Clytia hemisphaericatranscript
TCONS_00061935TCONS_00061935Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00061931-proteinTCONS_00061931-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_361supercontigscaffold_361:1403345..1412299 +
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
SEMA5APREDICTED: semaphorin-5A isoform X1 Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.56 3.68 1.18 0.57 107.31 74.36 55.48 58.71 28.11 30.31 19.7 18.25 27.13 20.93 23.39 29.78 29.64 31.82 29.84 37.36 22.45 22.88 19.61 21.26 20.27 21.9 6.48 3.75 5.32 6.75