XLOC_037562 (gene) - C. hemisphaerica

Overview
NameXLOC_037562
Unique NameXLOC_037562
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_330:464433..474146+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_037562 ID=XLOC_037562|Name=XLOC_037562|organism=Clytia hemisphaerica|type=gene|length=9714bp|location=Sequence derived from alignment at scaffold_330:464433..474146+ (Clytia hemisphaerica)
AGTCAGGTCAGCATCCTGATGGCAGAAGCAGAAATGTCAGAAGTGGAAGA
GGTAAGCTTTCTATTTCTTTGTACAATTTCCAATTGACTTTGTACAATTT
CCAATTGACATGTTTTTCCACCCCAAAACCTGCCTTAAATTTTAAAACAA
CGGGTACTTTTCTGCCAAAAGGTAACATTTTTCAAAACAAAATCGACTGG
CAGAATTTCTATACTATACCTAGTAGATAAATACTTTTTTATTCTTATGG
AAACACCTGGAATCACAATCTTTCATGGTTTTTACCCCTAACTGTAGATT
GGGCCAGTGAGAGGGGAATTCATTTGCGAAAATTACTTGTAATGAGCTAC
CGCAAAGTAGAGAATTATCGCCTAGAATTTAGTCAGAAAATCTGCCGTAT
ACTATCTTCGCTTTCTCTGATTTGAATGATGGCACTACTTTTCCCCCCAT
CGGAATTTTTAAAGGCAAAAACAAAAAGTAGTTGAGCTCCAGCTTCTGGA
CTACCTAGAATTAGATGTGGGTTACTACTTTCATTAACCATAGGCAATGG
GATGTCAATCATCAAACTGTTAGATTACTGAATTAATACAAATTAATCAA
CTTTAATCAAACAAATGGTGTTTGACTACCAAACCAAATCAAACAGTAAT
CGACAGATCGAACCAAGAAATTTAAGTTAGTTCAATGACTGTTCGGTTGG
TCTATTTCAATGTTCGATCATGATTCGATTATATAGTTCGATTGGTTCGA
TTATAATTCGATACAGGACAGGTTCGATTGTTTTGCTTTTTCTCATAATA
ATTTAAAAGGCTCCATGGTTATTATTCATAATATTTACATTCTATAAGAA
TTGCTAACCTTGCTTTTTTTCATAATAATTTAAAAGGCTCTGGTTATTAT
TCAAAATGTTTACATTCTAGATGACAATAACAAATAAATTACATTAATTT
TTATTTTTATAAGAATGGTGTTTTTCCAGTTCATCATGAATATTCTTAAC
TTTTTCGGAAAAATCAACTTATAATATTCTTAAGGCATTCTTAGTCAACT
TTCAAGCCATACCTCAATAATACAATACCAAAGAGGAAATTCTAGAAATG
ATACCATTTCAAGGTAACAAAATCCTGAAATTCTTGAATTTTTAGTGTAA
ATTAAGAGAGTTAGGCTCACATAAAAAGATAAAAATAGAAATTTATGGTT
GCCAAAACAAATTTCACGATGGCAATATTCTTAGGATTATTCTTAATTTT
TCGGCCAATTTTATCATGAATATTCTTATAAAATATATTCTTATACAAAA
AAAGTGTGTAACAAAATAACAAAAAATACAAATTGTAGGATGTTCAATGG
GATGAAAGTTGGCCCTTAGTGGGGACTCAAGAATTTTTTTTCACGTTGGT
GCAGTGCAACATGCTCCATCGCACCAACCTGAAATGTTTTCTTGTGTTGC
caccatttttttctccttttgaaATGAAATAGCACTTTTGAATCAATTGa
tttgaatcaattttgcttaATTGTCCTAGGGACAAAATTGCACGTTGTTT
GGGTTTTCCCCTCAATATTTGTcccatgaaatgaaaaaaagaaaccatct
gacacgcatttttttcttcttttggttGGGGCATGGGGgtcgtccacata
gtacgtacgcactaaaatgtaaaaaatcgaGTTCCCCTCCCCTTGTGTCG
GCAAACGTACACATATGCATCTATACCCCATGTTTGTACGTACTTTTCCC
CCaggcgaaaaaaattttctggctcagGCCTATATTTCAGATAGGAAACT
TAACTTCTTATTATTTGCATTAAGGATGAATTGTCAAAGAATAAAATTTG
TGAGAACAGGACAACAAttcactttttatctttttcacagaattttaCAT
GCAAAAAAGGGGACTGTAGAAATTTTGAGTATGACATTTTCTGTGgaccc
ctccccctgtacgcaagcatgtGCTCTTGACCAAACACCCCCtaccccct
tagtgcgtacatactatatggatggccccacGTTGCATTAcaccaacaga
aaaaatattttttgtgtccCACACCTATAAAGTAAAACTTCAATTAATGT
GATTATGAAANAAAGTAAAACCCCAATTAATGtgattatgaaaattttgt
ctgcaaaatttctttaacttttattttctcatAGATTTTTATTTGAGTAG
TTTATATGGgagtttcaaagattttctttacttttctttttttaatatgt
GGACAGACAGAACATTCTTTGAAGGTCTATTTACATTTTTACATCTTTTC
AGTACATTCATTTTGCCATTTTAGGTCTGTCAGTTCCTGTCTGGCCGAGG
AGTGGACACTCGAATCATTGAAAACTTCAGGCAAAATGAGGTAATTTACT
TTAACTTTAGTTAGATATTTGCTTTGTTGAATCAGAGGCCATATTTTGAA
AGTGGTAGGGCCAAGGTTTCATAGTTTCATTTAGCAagggtgttaaaagt
atgactttcctaagggAGGTTGACAGTTAATGGGGGGGTCTTctttccta
aggggggtcttcttagataAGGGGGATCTTCGTTGAATTATGACTCTTGT
ACAATcgtttcatttatactgataattgtcattttttaaatgaatttcct
aaggggggttagcacttaagggggTCCTCTTAACTAaggggggggtcttg
acccctctagaaattATGGGTTTAGTGTCTAAAGAAGGCGAATGACTTGA
AAATTGTTCAGCGTGAAACTGACAGTAAGTGTgtacattttttttacttt
tacaaataaaattatgGAAATTTATAAAAGGATTATGAATTGATCAAAGG
AAAAGCTTGAAGTTCGACTAAGCAACTTGGAAAAccttgaaagtgaaagt
aatggAAGGAATTCCTTGAAACCTTTAACAGGTGCATGATTGTGACAGTA
TGGTTGTCTTGTTTTGGTTTGCGTTCTCACTGAAGTTGTGGTCtatgcta
aagctctaaaaattttcttgctccCTTTGCTCGcattgatttttttccaa
acaaaatATAATACTGCTAAATAGTCCATGAATCTTGCAACACagtgata
aataaatttgagttTTGAATACCTCGAAATAGCAGTGGGCTATAaccttt
ttttccaaaataagcTGCTCCAATTTTTTTGGTCAGTTTGGACCCAAATA
ACACAAATCAAatgttttttgatgttttcaatttttggcgGTTCTTAGGT
CTTTATGCCCAAAATGGGCCCTGTTCNNNNNNNNNNNNNNNNNNNNNNNN
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atttgattattaatTTTTCATTGCTAAAAATGTTGTTTCTTGAAAAACTG
GGCCcaattttaccttttttataagcacatcatCAATTATTTTATTAGCT
AAACCTAAAGGTTAAACCTTTCCCACGAGCaacatttttttgaagaatat
caaaaatttcaaacttttattttgaaaccCAAAACTTTGAAGTGCCGTTA
ATAAAACTTAGCTTGCGAGTTAGATAATGGTTTTTCTTTCTTAATGCGTT
TGGTTTATGTCCTTTTGAATCAAGTGGTTAGGAGCTACATTCTTGAGTCT
GGGACTTGGTATACGAGCTCATTTTGGGCGTACGTTTGGGTCGGAAGGGT
TTATTGCTTTGAGGCTCCTTTAGTAACTTATTTACTATGAGGCGACAAAT
gacatttttaaatatttttcattttgtcatagATGACAAAGGAGGCAGTC
TGGAATGCAACAAATAGTGACTTAAACAATCTAGGTCTGAAGAAACAAGG
ACATATAATATGCCTGAAGACATTCTGTCATGTAACAAACTCACCCAAAG
GCAAACTGATTGAATCGATTAAAGATGCAGGAAGATCAAGAGTAGTTAAC
AGAAGAAAAGCCAGTAACAAAACTGTGTATATTGGTTGGTTGCATTACTG
TccaagacaaagaaaatttgtttcTATTCGTGGACAAAAAGGCGGAATAA
GGAGATTGAAATTATCACCAAATACAACGCTTCGGGAACTTAGGTTCAAA
GCGAAAagtatctttttcaaaaatggaaaGTCGAAAAAAGGAAAAGCTAG
CTCCATGATGTTCTACCTTGGATACTATGATAATGAACTAAtcgatgatg
aagatgaagatcaAACTCTTGAAGAGTACATAAATACCCATAAATATCCT
AAGGTACGTCTTTATTTAATGTCAAAACCTATCGCATACGTAACTCACTC
ATTAGAGTCAGACTCTGAAGGTTCAATCCACAATGATTCAATTGGACATG
ACGGAGATTCAAATAATCCAATCGAACATGAGGGTGGTTCAAATCCAATT
GGACATGACGGTAGTTCAAATATAATTAGAAATGACGGAGATTCAAATGC
AATCAGACAAAACAGACTTGAAAATCTGCCAGAGGAGCCGAACTTATTAG
ACGAACATAATGTTATTAGTGTCAATGTTGGTGGAATTATTCGAAGAAGG
TTGTTTTCCGCTCTTGCCAGAGTCAGGGAGGTTTATAACTGGGTAGGATC
GATGCCCGATGTTCCTCTACATTTCAACCTTATCTACAACCAATCAGTCT
TGGATCTAGATAATTTCGCCTCTAACTATTCACAATTGTTACTTGATATC
GAGGAAATTAGAAATACTTCGACCAGAAATGATTCAGAAGAACCACAAGA
AGAAACTCTTGAACTTGCTGAAAATGTCTTCCAAGCAACAGCTGACCACA
ATGAAAATGCTTCTCAAGCAACACCAGAAATTGTTCAAGAAAATGCCGAC
CCGAGTATCGTTTTAGAAGAGGACAATGATTCCTTAAAAGTTGATAGGTA
AGTAAATATTAGGTAATCTAAATGAAAATTAAGACTGAAAATTGTACCTA
CTAGTGCGTATGATCAgcaattttaaaagcatttGGAGGGCTTAGCAAAA
TTGTacgtctattgtttaaatgatgTCATTTATATCATTTATATTGTTCT
CTGTGTACAAGGGGAGAGGGGTTTTTTCAGTGATATTTCATTTTTCGCAA
AATAAGGCTTTTTCGAAAGAGTATTTTGTCgaattttctttataataacT
TTTGAACACGTTAACTAGATTTAAAGTATGATAGCTCAAGATTTAGTTAG
AATAAGTTAGCCTTTCCTGTTTCTGACGgtgaaaaatttagatttataac
atttttaattttcacacgatcttaaaattcaaacttgtacactttttttt
gaaacgCCCGGTACATGAATGACCCTTATTAATGGGCTTAGTCAATTATA
TTCTAGGTACGATATCGTGGAATCCCTTTTCAAATTGTATCGAAATGACA
ACTCATTGGAAGAAAGAGAAAACTTAACTATTGGCTACATAAATGAATCT
GGTGTCGGTGAAGGCGTTATCAAAGATGTTTATTCATCTTTCTTTGCCGA
ACTTGCGAAAATGCAAAGCTCAGGGCTTTTTGAATCGGTTCCTTCGAGTC
TGACTGAAGAAGAGGCACGATTGCTTGGAAGGATAATTTCACATGCCTAC
TCCAAGTTTAGAGTTTTCCCATTTCAAATGGCAAAAGCGTTTATTGAAAT
GCTGTTGTTCGATCATGTCCGGGATACAACTTTAATagaatcctaccaaa
acttccTTATGGTCAACGAGAGTAAaattctcgtaaaatgtttgaGAGGA
AATGATTTAAATCAAGAAGAAACAGACGACCTGTGGGCCGCTTTGAATGA
AAGTAACATAAGAGCAAAAcccaaaaaggaaaatattcacGCACTGGTTA
TCAAAGCAGCTAAATACGAATTCATTCAAAAACACTTTTATATCATGAAG
GGAATACAAAAGGTAATAAAAGAAACTAACGCATTGAACTTTGGTTTGAT
TGATGATATGGATGCTTTCTATGCCTCGGCCATGCCGACCGTAAGTAACG
TCCTGGAATATGTTTCTTTCGATTGCAAGAATCCCTCAGAGGAGAGGGTA
CAATTTTATTTCGAACGATATGTTCGGTCCTGTAACCGAACACAATTAAT
AAAATTGATCCAATATGCAACAGGATCTAACACGATTTCATCTGTGGGAA
CCGTTAAGGTTTCGTTCGTCAATCAGGAGAAGAATCTTAAGATAAGAGCA
AaatcttgttttaaaattttatatttaccAAGACAAATAAAGGATATGAA
TGTATTTAATGGTTTGATGGCAGAAATAATGGATAGAACTGATGTGTGGG
AGCTTCATGATGAGTGGGAGCTTCGGGGTGATGAATAAGAATGGTTTAGT
GAACATTACATTGAACGATTGAACGATCTGTCTTAAGTTTAAAATTCATG
TTTTGTAGTTATAGCTTTTCAATACTTTAACCGCCAAAGGTTTCTACCCT
CTGTAGTGGTAGTAGGGGGGGGCATAATCGaccttttttcgattttttac
cTTAACATTTTTTGGGTGCTGATTCCGAAAATCATACTCATTTTGGTTGA
AAATCAATATTCAGCTTACTACCCTATGCAGCAAGTTGGCCAAAATGCCC
CAAAATAGGCATTTCTGTGTGGAGCTTGTACCCAATGTTTTATTACTATT
TCTAGGTAATGTATTATTTTCTTTGGTCCAAAGGCTTCCGAATAGGCCAC
TGATGATGTCACAAGCCAACGTTGTCCTTATTCTAGTATTCTAGTCAAcc
tggtttgatttttt
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00059709TCONS_00059709Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00059709-proteinTCONS_00059709-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_330supercontigscaffold_330:464433..474146 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.03	0.03	0.02	0.37	0.3	0.71	0.9	0.61	0.73	1.18	1.08	0.57	0.76	0.02	0.02	0.01	0	0	0	0.01	0.02	0	0.02	0.85	0.78	0	0	0.02	0