XLOC_033492 (gene) - C. hemisphaerica

Overview
NameXLOC_033492
Unique NameXLOC_033492
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_224:90210..100121+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_033492 ID=XLOC_033492|Name=XLOC_033492|organism=Clytia hemisphaerica|type=gene|length=9912bp|location=Sequence derived from alignment at scaffold_224:90210..100121+ (Clytia hemisphaerica)
GGAGAATACAACTAAATGTCTTGTGTCTAAACAGCCATGTGCGAATACCT
GGTATTAGGGGTTATCTTTTTAATCGGAACAGAAATTAAACCATGTTCAC
GTTCGGCCCGCAGTTATCCATGCTGAAAATGATCAAGTTTATATTTGTCG
TTTGATTTGTTTAAACATAAATAATCTTTCATTTACTTATGGGATGATTC
ATTTTACGAGAGTTTACTAAATTTACAACAAGGGCGATTGAgttgtttat
tttcattttttttgtgaattctgaaaaagaaagtgaaaatttaATGGCAA
TGGGGGAGAGGTGATATGATTAAAATTAGATGAGAATGCTGGTGAATAAT
TATTTGCTTGTGATTTTAATGCTAGCACCTATTCCTTACGTTTTGTTGAA
AGGTAAGAATGCTCTCTTTTCTCtgttttatttgaaataatttggcGATT
TTTGCGAATGACGTCGAAATATCccgcaaaaaaatgttttcgctCATTCG
GAAAAATTTATTCTcgcgaaaaacctttttttaattttcttggtgNTGAG
GTTAGGACTGGGCTCTACATGTAATTGTCCTCTGATCTCTTCTTCTCAAC
TTCCAAAATCGGAAATCAGTAAGAGAATGTTCTAGGCTATTTACAACAAT
TATAATATTTAACAAgcaatttcttcattttgtacATAGTTGAATTTACT
TTTCACAAGATGATGACATTCTGTCACCGACTAGAGTTTCAGTGCATGCA
Tgccataaaatccagctaaaaccctgtaaaataccaaaatcttaaaattg
caATATAACTTTTGATGTAGTTATTCAattaacttcaaattttgacagat
tAGGTATTAATGGTATGTCACCAAAAATGGGTTTTCCAGAAagaatttta
cccccactgttgaggatattgatttttcgaagtatcaaaCCTCCCccttt
cttataaagatgataaaGATGCTTTACCCcttggatatcgtattttttac
ttgaaaatacatttttcccCCTgaatatccgctcccttgtagatatttca
ccccctggatatccgatatccacaacagggggcacggactatttgtggaa
aagcccaatgacgtcattatttttgtgaaaaattttctcattttcagtat
tatgttttttaaagatattctttatttttagcTTCAGAATATCAAAACAG
ATCTGAAAAATCTTTATTAGTTACACTTTAATTGCAATTTTATTTAAGGG
TACTTTTCACCGGTCTGCGGTAAATGTGAAACTTTCTGATGACATCACTG
CCTccgtgatgacgtcatcatcaatTCCTTTCATGCTAGAGAGCATTTCT
GACAAGTTTTAAGTACATACCACCtctacatcaaaagttatgcaagagTG
GCCGAAAACACACCCCCACGCCTTGAAAATGGGAACCCCCAAAAAGCTTG
ATAATAATTCTCCCTTCTGGAGAATACAACTAAATGTCTTGTGTCTAAAC
AGCCATGTGCGAATACCTGGTATTAGGGGTTATCTTTTTAATCGGAACAG
AAATTAAACCATGTTCACGTTCGGCCCGCAGTTATCCATGCTGAAAATGA
TCAAGTTTATATTTGTCGTTTGATTTGTTTAAACATAAATAATCTTTCAT
TTACTTATGGGATGATTCATTTTACGAGAGTTTACTAAATTTACAACAAG
GGCGATTGAgttgtttattttcattttttttgtgaattctgaaaaagaaa
gtgaaaatttaATGGCAATGGGGGAGAGGTGATATGATTAAAATTAGATG
AGAATGCTGGTGAATAATTATTTGCTTGTGATTTTAATGCTAGCACCTAT
TCCTTACGTTTTGTTGAAAGGTAAGAATGCTCTCTTTTCTCTGTTTTGTT
TGAaataatttggcgaatttggcgaatgacGTCGAAATATCccgcaaaaa
aatgttttcgctCATTCGGAAAAATTTATTCTcgcgaaaaaccttttttt
aattttcttggtgataTTTATGATTTTCATTATGCAATGCTTTCTACGGA
AGCACCCCGGCTTTTGCCAGTAGCggcaaatttcaaacaatttttctctt
tgcagcggagacaaaaaaggctgtaacttttgatagaattcgaataagAT
GGCGGtcttgtgcttgttgaaaagataatccgaAGTGGAatgttatcaaa
aaagaaaataaattaaaagatcgaaaaacaaacatgaaaaaggaagaaga
aacTCAGCTTCGCNccgtgatgacgtcatcatcaatTCCTTTCATGCTAG
AGAGCATTTCTGACAAGTTTTAAGTACATACCACCtctacatcaaaagtt
atgcaagagTGGCCGAAAACACACCCCCACGCCTTGAAAATGGGAACCCC
CAAAAAGCTTGATAATAATTCTCCCTTCTGGAGAATACAACTAAATGTCT
TGTGTCTAAACAGCCATGTGCGAATACCTGGTATTAGGGGTTATCTTTTT
AATCGGAACAGAAATTAAACCATGTTCACGTTCGGCCCGCAGTTATCCAT
GCTGAAAATGATCAAGTTTATATTTGTCGTTTGATTTGTTTAAACATAAA
TAATCTTTCATTTACTTATGGGATGATTCATTTTACGAGAGTTTACTAAA
TTTACAACAAGGGCGATTGAgttgtttattttcattttttttgtgaattc
tgaaaaagaaagtgaaaatttaATGGCAATGGGGGAGAGGTGATATGATT
AAAATTAGATGAGAATGCTGGTGAATAATTATTTGCTTGTGATTTTAATG
CTAGCACCTATTCCTTACGTTTTGTTGAAAGGTAAGAATGCTCTCTTTTC
TCTGTTTTGTTTGAaataatttggcgaatttggcgaatgacGTCGAAATA
TCccgcaaaaaaatgttttcgctCATTCGGAAAAATTTATTCTcgcgaaa
aacctttttttaattttcttggtgataTTTATGATTTTCATTATGCAATG
CTTTCTACGGAAGCACCCCGGCTTTTGCCAGTAGCggcaaatttcaaaca
atttttctctttgcagcggagacaaaaaaggctgtaacttttgatagaat
tcgaataagATGGCGGtcttgtgcttgttgaaaagataatccgaAGTGGA
atgttatcaaaaaagaaaataaattaaaagatcgaaaaacaaacatgaaa
aaggaagaagaaacTCAGCTTCGCGTAGAACAATGCTATCATCTTCATTT
TATCGGaaattctttaatcttagaacgtcataaatgcgaaaaaatattca
tgaaattttcattcagtcaaaaaatacagcttaaaactttgccctggtta
acttgaaaaaggccttttttttgttatatttttatagtttttgtAGTCAA
TCGCGTTAAATTTTGAACTGTATCTTTCGATGGAACAAATttctttaaac
aattttttcacattaatgacgttctaagatcaaagaatcactcaTGTAAA
AATTATAATCATAGGACgattattgaagaagttgattttcttcttcttca
ttttcaatcttcattttccgatattttaaaagtttttttctttatgataa
tattccactcctgtttgtcttttcaacaagcgaaaaactgctatctaatt
cgagttctatcaaaaattatagtcttttttttggctgcaaattatattga
gacagactttaatttacATAAAAGTAAATTTGTAACTGTTCATGTCCAGC
ACAATCTAATTCGATGAAAATGAATTCTCTTGATAATTCTTAAAGAAAAT
TATCAAGTCAAACATGCAATGCGAAAATTTATGACATCTTTTAAATTTGC
CTAAGTAGTTCATTGTAAAAACACAGATAGTTGCAAATCTGACGGCTCGA
TTTTCTAACATTAAATATGTATTTGTGTTCGAAAGAAATTTATGTACTCT
GATTttattctttgatttttcaGAAACACCCAAAGAGTGCGGTATTGTAC
TtctacaaaaagaaaatgattcaCACTGTTTAAAAGAAAGAAGGAGAAAT
CTACTTttccaaaaacaattttttcaaataacaAAACCAGAGGATCATAC
TATATATGAAACAAATGCTAACTCAATTGGTTTTCACAAGATTTTGCCCA
CTGTTCCCTGGTTGAATCGAAGCAAAGAAGAAATGGTGGCCTATTACAGT
TTCAATGACGAAGATTCGCGTTACATGGGCATGTTCGCTGCATACATTAA
TTTCCTTAAAACTGTGGAAAAGAAAGTTCGTGATACTTTCTTCATTGCAC
TCCGAAACACTACCGATGTTCCATCATTTCAATTCTACGAACGAATTAAT
CGAGCTTTCGATGGAAGTGTCAAGGTAAACTACTGTTCTTTGCATTCACC
CAGCATTCCAATTTACACTAGTAATACATGGTTTACCTTCTTAAAAGCGT
NGTCATTTCAATTCTACGAGCGAATTAATCGAGCTTTCGATGGAAGTGTC
AAGGTAAACTACTGTTCTTTGCATTCACCCAGCTTTCCAATTTACACTAG
TTATACATGGTTTACCTTCTTAAAAGCGTAAACAattctactttaatggg
ataaattttcgcggggattaattttcgcggatttcgcggatttgggtgtc
atccgcgaaaataagtcccattggaaatttgaaaaaggcccNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNccaatagtgccatccgcgaaaattaatccccgcgaa
atcttaaaatttcgcggatgagctcaaccgcgaaatttaatccccgcgaa
aatttatcccattaatcTTGCTTATCTTTGCTTTGGTAGAAATTGAACAC
GTTGTACGTGAGCAACCCTTGTCACAATAAAGAATGTTTAAAAGAGACTT
CTCAACAATACAACCCGCTGGACGATGAAATGTTTGTTCAAAGAAGGCTG
GCTGGACCATGTCCTTTCAACTTGAAACAAGTCTCTACAAATGGTCAgtt
cttattttctcattctcacgGTCGAATCATTATGGAGAAAACTCAGTAGA
AAAATTACTTACAAACAAGGTtctttaattcgattttcaagggcaCCTTT
ATCGAATACAGGAGCGTGTCGAATAGTAGGGAGTTTCTCTAATCTATTAA
AACGAGGAAATTTTAGACTTTAGATTGATTCGGAGATAATTTGGACAAAT
ATTGAAGGTCTATCTATCACCAGCCGGGGAAAGAGAGATTGCAATTTATT
TGTGATTCACTGTATTTCTCAACTAAATCTACTACTAGATTATTAGAATT
CGATAATTTTTTCCAGGTCCGACTGGGATTCTTCTCTCTACCCTAAAAAG
AAAGATGAATTTGGATTTCGATTATGACCAAGCATTGACTCGAGCGCTTG
GTAAAAGAACCACTCTGGCAAAGGTAAATAAATAGAAGTGATAAAAATTG
TCCATAGGTTTTATCTGGTAGAATTGTAAAACTACCTGAAAGAAAATGGT
ATTGTGAAGAAAGTTAAAAGGAAACTTGGAACATGTTACCAATCACCATA
AAAAATTAgttcttgccaaaattagttccattAATCACAAACAAATTACA
ATCTCACTTTTTCCGGCTGGTGATAGGTATAGTAAATTCATTTTGGTCAG
GTTAGGTTATCTGGTTCCGATAAATGACCTCTAAAAGTGGTGGATTTAGA
CGAAAACACAGACCGTTCTGGTTATTTTAAGGCAATCCTGATCAGGGGCT
TTGCAGGCTACCTCATATCTTCCTccgttttgagcgtaaaactcctaccc
TTTGTGGATATTATTATTGATGTCGGCTAATGCACTCCGTTTAGGCGGTG
AACAATGGACTTGTGTTTGTGTTGTACCACCCAGAGATTGACCACATCAC
CGCATCTTCTCCCTTCAGTGATCCTGCACAGGAAAGGACGTTTCGCAAAA
TGAACAATCCCATTGTTTTCTTCATACTGACAGATGACGgctttttgaaa
atagtttccATTCAAAGGGACAGTGAGAAAGGTATCTTGATTCGTTTTAA
CCATGGAGGtatataaagtaaaacaggAGATGTATGTTATTATAACCAaa
ctcgccctacgattaaaaaagttacgaggtTTGCATATATcccatatatc
gtgcatttttaatgtgctcttttaaggccggtctccactttcgcgcgaca
tgagcgaaaactttttgacgtttttgtaaggtcatcggtcgattgaaaaa
tgaagcaattccattggtcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNgcgacatgagcgaaaactttttgacgtttttgtaaggtc
attggtcgattgaaaaatgaagcaattccattggtcgaaattgacgtaat
ggatgaaaaaattagaacttccttcaactttttttttgttcgcgcgaaac
ttttttatgacgtaatcttttctttaggcaaaaaaggttaagaaaaaaac
tgtcgcccatttcgcgcgaaaacTTTATCCGTTGGTTAAATCTTTTTGGG
TCATTTCAGTGTTAAAATTaaatgagacgagattcattgtttctgacatc
gaTGTAATAAagtatttttactaaaaatagcctacaaacttggcaatcct
ttaCAACAAATGGAGAGAATAAAGTTTTCTTCAAAGTAAACCCTGTTGCT
TTATACTTTCCTCTAAATTTTTCCAGCGcctttttgtctaaaaattgagt
ctgaaattgcgtttgcttataaagaactttccATTTTCTGGCttaagaaa
gtatttttttcaaaacaaaatttcacgGTTAACAAAATGGAACAGAAACT
TTTTTCGTTgtgagcttagaatttcttttgatacatttcatAAGAGAAAT
CAAAAGACCAATTACTGAcaaattcaactcctgtttttctttatacttcG
ATGTTTGTTATACTTTCTTCTTCCTTCCCAATAATTTCCCAACTTATTTC
TTGCTTCAGTTTTTATTCTTCTGACACCTGTACTCATCAATTGTCCCGGT
ATCCTAATTATACTAATTTGAGGTTACAAATTATACCAGCATCGACCCTT
ACTCTTAGGTTACCAAATAAATCAACACccttttttcttatctttttgat
tacctttttaatttttactgGTTTTAACTAGATAGTGAAGTCCTGCAGCC
GATAGAGAGTGACCCGGAGGAATGGCTGAAAGTCAAAGGTGATGCTGAAA
TGGCGGACTCCAATTACTGTCAAGGTTTTTACCATAGTGGTAAGATACAC
TTAGTAAGCACCATTTACTGTTTGGCATACCGAAGACACATCGATAAAAA
CCATCCGCTTTATGACTTCTTCTTGTACCATTGTGAGGGTACTGTACCGC
ACATTTCTTTGGTTTATCACACTTTGCTGACGTCAAATGAACGATCAGAT
GCGTCATTAGGTATGGGTCATCAAGGATTTTTGCAATTAGGAACCAAAGC
GTTTAACAGTAGAATGTATGGTGAACTTGATCTCCCATTCTTTTTAAAGG
TAATTATTTCTTTCGATTCAAATGATTTGAATCAGATGATGATGTTTTAT
GCTTTTTTCGATGATTAAGCTGACTGCAGACCTTCTTCTAATTTTACTTT
CACCCTTTCTACTTNATTTTTTCGATGACTAAGCTGACTGCAGACCTTCT
TCTAATTTTACTTTCACCCTTTCTACTTTCGTATtggatggaaaaaataa
aataaatcataTCAGACGCAAGCAACCTTTATTATCTTTGTCTTTTTTCA
GCGAAAAGGCTTGGATAACAAAAGAATCAAGTATTATCCCTTTCGAGATG
ATGCTGAGGTACTTTGGGAGGAGCTGGCAGGGTTTACTAACGACGTCATC
AGCGAGTAAGTTTTTGTTTGATACCTTTACAATTTAAATGTCACATTTTC
GTTTGGCATAGTGCTGAAATCTACTTTTCGGTGTTAGAACATGTCGTAAA
AGCAGTGTTGAAAGTAGGTACAGTAGAAATCATTGGATAGTTTacttttc
atttaattttctgGCTTACTCTTCTGTAcagaattcagtcaaatcagCTA
CAGTATATCAACAGTTAAGGTATTAACGAGGTTAATGACTATAGTGAACC
ACAATCGAGCTATTAAAAAGGAAAGTGGCTTCATTGGTTTTATAGAATCT
ACAAAACTGATGACGAGGTTTCCCAAGACCCTTCCCTACAATCTTTCGCA
ACAGAATTGTCATCTAAAGATGCCGGTAATGTAAGTGCgccatttttcag
tttttttctcgTACGTTTAGCCGTGATTTTAAAGATTTGTTccattttct
tgtatttttaaaggagaaTATCATTCTTTTATCATCAACCTGAAAAATTT
AAGCCATCTAATTGACTAGAGAAGCAATATTTCCAGTATTTCATATTTAT
ACCTAAAACTACGAGACCTCTTCAACATGAGGGGTGTGTAAGCGAGAGGT
CACAATCTGTAGAATTGTTTCTCTAATATAGTTGATCTAATCGTATAAAA
TAGAATATGATGAAGTGTTTTTGCTCAACAATATGCGTTTCTGTAAGGGG
TCCCTTAGTGCAAAGTGAGCAGAAGTAAATGCATATTTTCTCACTCTGAA
AACTATTTGACGACGCATTTCTATCGAAAGATTtccaaacaaaaaatatt
tttcagatttcGTTTTTTAAGACGGAAACAAGTATgtctcaaaaattata
aaaaatttaaaaaatttacttaAGGTAAAACAATCTTCTTTAATTTTCAG
ATGGCTGGATTTCCGACATATTTTGAAAGCAAACAATCAATACGATTGTT
TCTTTTGAGATTTCTTTGGTTCAATGTCATCCATACAAGTTTGAACTATC
CATTAAATATGCACAGTCAAACGTTCAGTCCTACAAAGTCCTATCAAAAC
ATACAAAGAGAGCCATTCTCAACTTATCTTCAAACGTTACCTGATTTGTA
CACAGCCGTTGT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00053027TCONS_00053027Clytia hemisphaericatranscript
TCONS_00053028TCONS_00053028Clytia hemisphaericatranscript
TCONS_00053029TCONS_00053029Clytia hemisphaericatranscript
TCONS_00053030TCONS_00053030Clytia hemisphaericatranscript
TCONS_00053031TCONS_00053031Clytia hemisphaericatranscript
TCONS_00053032TCONS_00053032Clytia hemisphaericatranscript
TCONS_00053033TCONS_00053033Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00053029-proteinTCONS_00053029-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_224supercontigscaffold_224:90210..100121 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.89	0.9	0.79	0.38	0.81	0.78	4.85	5.11	1.63	1.21	4.17	2.73	4.08	3.04	2.56	5.13	10.39	11.62	0.49	2.27	6.46	5.33	4.65	3.66	7.3	7.71	0.26	0.13	0.1	0.17