XLOC_033060 (gene) - C. hemisphaerica

Overview
NameXLOC_033060
Unique NameXLOC_033060
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_213:411228..421228+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_033060 ID=XLOC_033060|Name=XLOC_033060|organism=Clytia hemisphaerica|type=gene|length=10001bp|location=Sequence derived from alignment at scaffold_213:411228..421228+ (Clytia hemisphaerica)
cTCTCAATCTTGAAGGTAACCGGAAACTTGATTTTACGTCATATTTCTAC
TTTAGCTAACCAACTCTAAAAGCCATCAATCAAACCCACTTTATGGATGC
AACGTGTATTCTTGATGCCAATCCTGTTTCGTTGCACGGGGTCTCAGGTG
TGATTTGTCTAGTCTCTGTCTGGGTTGTTGGTAGTACCTCTTAGATATCT
AGCTGTAAAGTATTCATTCTATCGAAAATGGCTCGTGGAGGTAAAGGACG
AAAGATTTCTGGCGGAAACGATGGAGTCGTTTATGAATCAGGTCCAAGCG
AATCCAGTGGTGGCATTGGACTATTCaatattttaatcttttttctcGCA
ACAACTTCCATTGCCATTAATGTTGGAATAATTTATGGTGCCATTCCAAT
CCAAGGTAACTATTAATCATATTTCATATAAATTTCAGATTTCCAATAGT
TGATTTGGGTATTTACTCCACTTGTAAGCAAGGCAAGGCCAcaaatcaca
aataacttgtgttcgcgTTGTTGGATCGACTGATAATTgttctaaatttt
cagattattttgagtCGGGAAGTTGCAAAATTGTCGGAATTTTATCCATT
TCCATCCTTCGCTTCACCTGTCATCTTTACTTCAATCACATTCATTGTTT
TActgaaaaatacaatttcaaattttggagaTGATATTAAACCCTTTCCC
TAGTTATCATAAAAACAGAGAAAACCACAGAAAACGTCAAAAGGACTTTG
CGGGGCATTGAAGAAGGGGTATAAAGTAGTGTAGTATCAGGAGCCTAAAA
CCCATGCTTTGGTGGTGAAGGTAAGGCTTGaacaacataaaaaaaaacag
cataatcacaatagaccttttttcaaagaggacgtcctgttgaataatta
tgtagtccagtcattaaaacaatgatagagccatgcataattactgtatc
atgcatattgtaataattttgcatggttttatcattgtttttctgctgaa
ctacataattattcaacagggtggcctctttgaaaaaagacttATGGCTA
AATCTTCATGATGCACTGACAAGCACGGagacagaaaattttttgaaact
tttcaatactTCACCCCGGCTCGAACCTACAAGTTTCCGATTACAAAACA
CGTAGTCCATACCACACTGGGCCACGACGGCTGCTGATTTTCCGAAATTC
AAGGTTATTTATAGAGTGACATACATAGTATATCAGGGTTGCCACGTCTG
CCGAAATTGTCTGGAATTTAGCAAAAGTCTGGAAATGTCTGGTAAGTCTG
GAAAAAGTCTGGAAATAGCATACCTGTCTGGAAAAAGTCTGGAAATAGAG
AAACATACATACTGGGAATAACCTGTACTGTTAACTTTATTATCTTTGTT
AAAGACAACCTTAGAATTTTGGtttttgcacgtttttttactTGTATATA
CTTTGTCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTATATACTTTGTCA
CTTATAAAAAAGTCTGGAAAATATTGGTGTTTTTTACCTAAAGTCTGGAA
AAATTTGgcgattttaagcaaaaatatcTGGAAAATATTGAGGTTTTTGG
GCAAaagtctggaattttgaaagtttcctaCCCGTGGCAACCCTGTATAT
ACGGGTGAACAGACCTCACaagttaggctaactgttatgatcGCCATTCC
TCCAGGAAGACCCCACATACAGGTGCACCACCGGGAGGGTGCACAGCCGT
CTGGGTGCATGTTTGGGATGAGCAGCAGGCTGGCGCCTATCCCTAACAAA
ACGCTGCGCTCGCCTATTTTGCGCACAATATTTTGCCCGCGCGGTGTACT
TGCAAGGCCGGTGCATCATGAAGATTTAGCCATaggtgaaaaaaggtcta
tacagtcatagcgtcagcctgggtttagatCCCAGGCAAAAActaggtcc
cccctgagttttaagtcgccccaaagatttatgaaatttgttaGCCCCta
ggacttttgaccctagacacttcaaaaaattgatccagtaaatAAGGGTT
TTCCAATGCAAATTGCAttcagttctaagtttaagataaaatattttgca
cactttctataaaaatattgcgccgcaggcaaaaatttaattgagtaatt
gaagccaactattgaaaacaagctgaattattttagccgTTAGTGATTAG
ATTTTAGCTCTCCCCANaagctgaattattttagccgTTAGTGATTAGTT
TTTAGCTCTCCCcaagtacataggtcccccaaaaaagtggtgtacttcca
gccccctctttttggggaaaaatttAGGATGTGACCCCCTAACCCaaggg
gggctgacgctatgttaCAGACAAGTTTGATTCTGTTAAATTGTCAACCT
TGTCCCAGTATACTTCTTACCAGGTTTTATGAGGTTGATTAATTTTGTAT
TATATATACCTTTAATATTAAATTATATATAAAAAAATTATATCTTTAAT
ACTGATGAATATAGTCTTGAGTTTGCATGTTTTCAATTTAATTTTCCATA
GGATGTGAAGGACCAGAAGGAAAACCTGGTAGACAAGGTATGATATATTT
TTTCGAAGTTAGAACGTAACTGAGAAAAGAGGATCTTTCCAACAAGTTCT
CACTTTTAACAAGTCTCTTTAAGTTAAACCCTATAACTCAAACAAGTTTG
CTTGTCCCTTCAGTTAACTTTGCAGAACTATGCCTTATAAAATTCTTATG
GAGACTTGAATAGCACAGACTTCAGAGCAAATTATTCTTTGTTTTTAAAT
GACAACCTTTCTGTTTGCAGGACCTGCAGGACCCCAAGGGGTAGCTGGAC
CCATTGGCCCTGAAGGTAATTATTTGTAATTTAAAGATATTGAAAATATC
TATCTATTGTTGCTTGATCTTACTGGATATTTTTTTACCTGGTAGACCAT
ATATTTTATAAAGCATTTTATTAACTGACACTTGGTTCATCATTTTGTTG
CTTTTCAGCCTTTCTAATTCCAGGCCAttttcatgccctttaagcatccg
gttatcggacgctgcccctcttgaaattactaaaattttgataaaaaccg
taaaaacagcctttttagtggaaaaacataagaaaaagtGCCTTGCCTTT
Ctagggggggtttcatggttggcggaggagcggaatcggcccttttttcg
gacggagNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNcggaattacggaaattgggttctct
gacggagacggaaaattagacaattttagtgcggaaaaacggaatttagc
aaaaagatttgcggaatttcggaattagtaaaagatattcaaaatttgcg
gaattttcaacaaaaatattgaatttcaaaggaattttcggtgacagaat
tttggttcaatttaagacgatTTGACGGAATTTGGAGAAAAATTTGACGG
AATTGCGAAAttgggtaccccctgaaacccccccccctttctaaaatatg
gcctgaatTCATATTTATTTACATCAGCAAAAAATTCTGGGTTCAATACT
GTAGTAGAGTAAGCACTTTCACATTGGCAAAGACAAATTTAAGGCAGGAT
TTGCTTCGGCAAGATTTGCATCCGCAATAGCCAAATGCTGACGCAAATTA
GAATggctctttttattttattacttCTGATTAATAATATTAGTAAGTTG
TGATACACTGCAGATCAGAAGTTTTCCTATTTTTATTTTGGTATACAGTG
GTTTAAAATTCAGTAAATTATTTCATTCCTTTAGGACCaaaaggtgatgc
aggagatgaAGGTATGCTAAATACATtctgtcaaatatttttcttacttc
AAAATAAGAACTGACAGGCTTGATTTGGCATTTTTGTAAAGCaatttttt
gatagttttataAACACAAAACCAACATTCATAAATCATAACTCGTTAAT
CATAACTCATAAATCATAATGTTTTTACTACAGGACCCACTGGACCCCAA
GGAGATGAAGGAGCTCAAGGACCAAAAGGAGATGCTGGAGAAGCTGGGCC
TGAAGGACCAGCAGGATCAAAAGGTTTGAATTGTTTAATGACCCTGAATG
ACCTCCACACATTTATTAATTTACTGTAGAAATTTATAAGCAATCAAAGG
AAAAGGTAGAGCATTCAGCTAAGGTGCAAATTTGTGAAAGTTGGTTCTGT
AAAGATTTCTGAAATATTGATTCACTTAAGTTCaatttttcgtcaaaatt
taTAGGTGATGCTGGGGCTGATGGTGCACCAGGTGCTGATGGAAAAGATG
GTTAGTAAATTATTCCCTGCGCATTATTCAAATTTGCCAACATTTGCTAT
ACCACCTCATATGTGATAGGTCGTTTTGACAGgtttaatataaaaaaaat
gaatttattttctaatgaaccaaatttgataaatgacttATCATTATCAA
AGTCTTTCTTTTTTCCAatgaaaaatgtttaaattgatgaaaaaattcaa
ttcaaaaagtttaaCTTACTCCTTGCACAACTAGTCCATGTTCCTTATTT
AATGACATCTTTACactttttggttcaatttaaaaACTTACGCTTGATTT
aataaatcaccaaaatttgaaGGATATGTTGAGGCTGACTCTAATTTTTC
TCTCTAACTAAATACAGGAGCTGCAGGAAAAGACGGAGCTGAAGGACCTG
TTGGACCAATCGGCGCTGCTGGAAAAGATGGTGAACAAGGTGAACTTTCA
ATCATTTTCACTGTCATCTTTAAAATAATGGTTGTAGGAAAATAAGAgct
tttttaaaataatatgtGGCTTTTAGTCAAAACCtaacaacaaattaaaa
attCCGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNAAATGATTGGATATAGTTAGCATACTTAGAacattttagca
aaaaaataagGACATTCAATTCTCAGCCAAAATTCACTGGtttctataaa
aaaagagtgtagagtgaattcatcaaaattatatttattaattCTATATC
AAGTAAGGGAAGTAAGGGTTGATTAATCTTAACGttgatatattttttga
taatgactattaaattttttcttctttctaggTTCACAAGGACCAGCCGG
ACCTGCTGGGCCACCAGGACCACAAGGACCACAAGGTTTGACCTAAATTT
TAATTGGTATTTAAGTTACTTTATCTTCAGAATGTTACTGCTAttgattt
ttttgtctgtttaaacctaaaaacctaaaaagggtaaattgaaattaaat
tgctATTAAAATAATGCTTACTCAAGGTGAGGAAGGACCACAAGGCAAGC
GTGGAGAACGTGGTCCACCAGGACCACCGGGACCTGAAGGGCCAGAAGGA
CCTGAGGGGCCGCAAGGAAAACAAGGATTGAGAGGTGAGGAAGTAGGATG
TaatgaatgtttttttaaacaaaacattaATATGCATACACATCTTATAC
TTCCCAAAACCACCTCCTAACTACTAACCACCCACAATGTACACTTTTCT
CTTAAAAACGAGGGTTGCGAAAATCAAACTAGTTAGGCAACATTAAACTA
TTCAGGAGAGTTAGAACAAATCATTTACCTGCAAGAAAAGTCATTTTACA
ATACAACTACCATCATCCTTaactatctttaaaaaaatgacaactCGATG
TgacaaataaaacaaacaaagtcTGATTGTCTGAGAATGATGGGGGAATG
ATATGAcaaatagtagggggccaagcctggggtcctGTGACATCtttacg
acctagccatttttagtctatttcaaagaacagtatataaaaagatattt
ttgagagggaagacgcggattaggcctggtaaaactttttgtgaccaaaa
tagtgacgccataggcaaaactgcaaggaaaaataaggggtagagaaata
gcttattttcaaaagtcaaaataaacaaaaatgattggtaccatctgata
cagcatgaaattctgagcagtAAATTGTATTAtcacaactctctgactaa
cacacacaaagaaatacagcaagttgaagttcaaaaacataccgacgtcc
ATGATCAAGACAATAGATTTGATGTTAaattacagtagagctgacagtta
gttggtctaTTAGAGAGCAGAGAGAAATAAAAAACTCAAACATCATCATG
CTTTACACACCTAACAAAACGAATACAGTATAGTTTTACAGCTCAACATA
CCTTTCACTGTACCGGGAATGGTTCTCAGTCGAGGACCGAAACGtctaca
aaatatattttgaaaatgaacaCCATATGACAAAATTAACACTCAAGGTT
TATGAAAGGATCGATGTTATTACAATACGTTTTTACTGCTCTTTGATACA
ATATGGAATACTTTGCGAGTAGACACGAAGTTGACGTAGCATCAATTTGT
TGAATTGCCTTCGAAGCTACAAGGCTCTGAATATCCTTACAACTTATTTC
ATACACTGTACACTTACCAACAACACTTACACCTTATATCATTTCTTTTC
AGTTTCTATCTATTTGCCAgaataaattttctttgttgaaaAATCATCTA
ATGTTATAATTCCTTCATTTTTGTATCATCTGGTATCATTGTTAATAAAT
TTGAGTGGACTAAACGTATgctatcttttgttttttaggaCCCCAAGGAG
AAACTGGAACCCAAGGACCCGCTGGAGAACAAGGAACTGCCGGAGAACAA
GGTCAACCTGGACAGCAGGGAGAACGTGGACCAGAAGGTGCTGCTGGCCA
ACCCGCTGAGGCCTAAGTCTTTTCGATTGAATTGAAAAGTACATTTTTCA
CGAAGATGTTGTAAAAACCAAAGATTGGGAATATTTTTATTGTAgagttt
ctttttgaaaaaactttttagtaTGTGTTTGTTGGTTTAGGTGATAAATG
TTTTTTCGAgttctttcaaaaacttttaggcAAGCTAGAGAGAGCTTCTA
TGTATGCCTTGGATAACTTAGCCTCTTCATTCCCAACTGAAAATTGTGAT
GAGAGCTTTTGATATGTATAAACTTTCGCTGTCTTTTTGTAGAGTTATAG
AATTTGTTTAGAGATTTAAagtatttgtttattttttagaatttatctAT
TATAATTagtatttgaaaatgaaattctcCTTGCTTTTTAGttgtattct
tactttttagttattttttaaatgaaacgtCTAACGTTATAGTTAAGTTT
GGTAGAAATTTggtagaaacttttttttaattcatttcaaaattcaagat
aATAATGGTTCAATCTTGCActttgaaattaatttaaaaacaagtttctt
tttgatTAACGATTCAGTTTTTGATTGAGGTGTAGGCATTTGCAGAGATT
TTAATGGAGGTTTATTTCGCTAGATCTAAGCTTTAATAACAAGAGCGATA
TGCAAGGTCACCAANACGTTTTTACCGCTCTTTGATACAATATGGAATAC
TTTGCGAGTAGACACGAAGTTGACGTAGCATCAATTTGTTGAATTGCCTT
CGAAGCTACAAGGCTCTGAATATCCTTACAACTTATTTCATACACTGTAC
ACTTACCAACAACACTTACACCTTATATCATTTCTTTTCAGTTTCTATCT
ATTTGCCAgaataaattttctttgttgaaaAATCATCTAATGTTATAATT
CCTTCATTTTTGTATCATCTGGTATCATTGTTAATAAATTTGAGTGGACT
AAACGTATgctatcttttgttttttaggaCCCCAAGGAGAAACTGGAACC
CAAGGACCCGCTGGAGAACAAGGAACTGCCGGAGAACAAGGTCAACCTGG
ACAGCAGGGAGAACGTGGACCAGAAGGTGCTGCTGGCCAACCCGCTGAGG
CCTAAGTCTTTTCGATTGAATTGAAAAGTACATTTTTCACGAAGATGTTG
TAAAAACCAAAGATTGGGAATATTTTTATTGTAgagtttctttttgaaaa
aactttttagtaTGTGTTTGTTGGTTTAGGTGATAAATGTTTTTTCGAgt
tctttcaaaaacttttaggcAAGCTAGAGAGAGCTTCTATGTATGCCTTG
GATAACTTAGCCTCTTCATTCCCAACTGAAAATTGTGATGAGAGCTTTTG
ATATGTATAAACTTTCGCTGTCTTTTTGTAGAGTTATAGAATTTGTTTAG
AGATTTAAagtatttgtttattttttagaatttatctATTATAATTagta
tttgaaaatgaaattctcCTTGCTTTTTAGttgtattcttactttttagt
tattttttaaatgaaacgtCTAACGTTATAGTTAAGTTTGGTAGAAATTT
ggtagaaacttttttttaattcatttcaaaattcaagataATAATGGTTC
AATCTTGCActttgaaattaatttaaaaacaagtttctttttgatTAACG
ATTCAGTTTTTGATTGAGGTGTAGGGATTTGCAGAGATTTTAATGGAGGT
TTATTTCGCTAGATCTAAGCTTTAATAACAAGAGCGATATGCAAGGTCAC
CAAATCTTACAATTTTCCATGTGAGTTGAGCGAAGGTTTCATCATGGCGA
AACCACATAACCCTCTTATCTCTGTAAGCATAATCCATAAGGCTTTTTTA
TAATGTTTTATTGACGGCTTAttaaaaacctcaatttttttgttttataa
aaaaaagaatttttattacTATTTAGATAGCTTTAATACAGCGCcgataa
aatatatatttaccaagactttgttaaaaaaatacgCCTCAAGTTACTTG
CTTTCGTTAAGTTTATTTTTAGTCCCTTTCTGTAAACTGCAAATCTCAAA
AGAAAGCTTTGTATAtataatcacatgataacgagtgcaattcgaggaaa
g
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00052233TCONS_00052233Clytia hemisphaericatranscript
TCONS_00052234TCONS_00052234Clytia hemisphaericatranscript
TCONS_00052235TCONS_00052235Clytia hemisphaericatranscript
TCONS_00052236TCONS_00052236Clytia hemisphaericatranscript
TCONS_00052237TCONS_00052237Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00052236-proteinTCONS_00052236-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_213supercontigscaffold_213:411228..421228 +
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
LOC105378220PREDICTED: macrophage receptor MARCO-like Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
58.93	49.26	10.65	7.27	112.48	94.98	324.57	328.05	215.6	240.59	142.34	118.69	103.86	85.38	202.65	225.32	337.5	264.49	23.28	52.5	408.75	380.07	458.44	456.05	372.43	406.41	437.98	411.96	779.44	626.06