XLOC_031954 (gene) - C. hemisphaerica

Overview
NameXLOC_031954
Unique NameXLOC_031954
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_172:116821..127055+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_031954 ID=XLOC_031954|Name=XLOC_031954|organism=Clytia hemisphaerica|type=gene|length=10235bp|location=Sequence derived from alignment at scaffold_172:116821..127055+ (Clytia hemisphaerica)
NNAATTGGCTGCTCAGTGGATCACGTGACCGATTGGTCAAAGTCTTTGAT
ATTCGAACGATGAAAGAAATTTCTACATTCCGCGGACACAAGAAAGAAGC
TGCTTGTGAGTTACTTTTTCTGTGTCTTAGTTGATAAGAAAATCAGGGAA
TACTTCAATATCCTAGGTTTAAGATGGCTGCTACGTCTTTATATAAGGGT
ATTGGGAAAAGGGAAGTCCTTACTTAgatttggtgtttttaccaGAAGGA
GGGTTAATAACTTTAATAAAAAAGCGTTATTTTGTAATTTGGGattgtaa
agttttttgctGCAAATAACTTCTACCTTGTTCGAGAGTTAAATACATTG
CCATTAAAGCCAGCCTTGTAAAAAATGCTTCATAAAATTTCTTCTTGAAC
CTGTTTGAAAAGGTTGTCGAATCCAGGANAAAATGCTTCATAAAATTACT
TCTTGAACCTGTTTGAAAAGGTTGTCAAATCCTGGGTAAAGGAGGGTTTG
TCTTAAGATTAGCGACCTCCATTCATATTATGGTATAAATTTCATTATGA
GAAATTTTGTTTGACTTGTTTTTATAGCTGTGAATTGGCATCCCATCTAC
GAGAAGATGTTTGCAAGTGGAGGTTCGGATGGATCCATCATGTTTTGGTT
GATGGGGTGAGTGTTCTTCCTCTACACAGAATGTATCTCTTTACCACGTA
CCTTATTTGCTAAAAGTGAAGGTTTAAAATGTATGATTGACCAACACTGG
AGATTTTTCAATGGAAAAGCTTTTATACGCAAATTATCTCCGGTATCTTA
AAAAAAGGCCTTACAAACCATAAGAGGATGCGGACTTATAAGTGATTCTA
TTTTTCTTAGAGATGGTTGAAAACGTTATAGTTTTgtggtttgtttttgt
tttgttggtgaAATCTATGTCAGCTAGGAACAGACTGCTTGCTTTTGTTA
CGGTTGAAGATTTTTCCTATCTGGGTTTGGCGGAATCGGTCAATTTAAAA
GCACGAAGAAATCGAAtaaattccaaattttaaagGAAGGGTGATCAAAT
TTCAACATTATTTTCAGGTGTGAAAAAGAGCTGGGTTGTATAGAAGGAGC
TCATGACGGCATGATCTGGGATTTGAAATGGCATCCGCTGGGCCATATTT
TGTGCACTGGCTCCAACGATCATACCACGTAAGACGCTATTACTTATCTT
TTTTCACTAATAGTTCGGTGGCCCAGATCTTCCTATTTAGAATCGAGTAC
TTTTTCGGTTATAAGATCGAGGTAgactccaggtaagtgacctaccggac
atgcggcccttaagggtaggttttttggactttggaaagtgcgctgtaag
ggttgatttgtgagcaaatgggaaaaagtgcattgtaagggtgtaaaatt
tgagaaaataccaaattttcaggtaaaatttgagaaatttcgaaaaatta
cactataagggtcgattttcatccagatttttcctgcactgtaagggtcc
gattttagagacctgatttttggccgaacgtacggtggttttcaaaatcg
agtgccccccccgggctcATCTTATGCGCAActtgttttaaaagtttctc
tATTNAAtctaaattatttcgtagaggtcgatagacctgtgaaatataat
tctatgaataatgCACGTGCATAAGTAATAATAATGATTGTTTAAAGGAT
CAAATTAAAGAGGGAATCgaagttttttaagaaaaataactaTGCTGGAA
CATTTTGGATGTTGATATATATTTGGCaaggatttttttgtttttgatgt
tgTAATACAAGAAATCTTAATGAAAATATGCAGCGGTGTTCAAAGCACCG
CCGACATGTGCTAAAAGTTTTTGAACGACATCAAGTTTGCATGCGGTCGT
TCGACTTTTGGACAATGTGGAAAACAAGCTTTTCTTCTGTAAACAATCTT
TAAGATGTTTTAATCCAATTTGGATCGTGAGATCATGGTTCATTTGGATT
GCGTGTGAGTGGACAACGGTTTTTAGATCAGCCTCGGATTTGGCGAGTTG
CTCAGATAATTTGTCTTTGGTGATGTTTGACATTCTAATTTCACTATGTG
CTTCTGCCAACGATTTCTCATACTGTCCTCGTTGTTCACGCTTTTCTTTT
ACTAATTTCCGGATCCAGAAATCCAATCCGTTTTGTTCGACAATCATTTC
TTCCAAACGGCGTTCAAGAACTTCGTTCTGTTGATCCAAATCTTCGATGT
CTTTATCGGCAGACTCTAAATCTGCTTGGAAATCGTTGTTATCTTTCTCC
AAGAATTCTACTTTACACGCATACtcttccaactgaattttcaaCTCTTG
CATTTGTCGCATGGACTGCTCAAATACGGCTCGTTCTCTACGGGAATTTT
CCTCGATTTTTTCATTAGCAACACGAAGCATGTTTTTTAGCTGGATATTG
TCTTGATCTTGTCGATTAATTTTCTGTTTGTAACTGGCAAGTTCAGTTTC
GAGTTGCCTGATTTGTCCAGCTCCAATAAGGGAGGTTTTTTGACTCACTT
CGCTTCGAAGATCGTCGTTTTCAATCTTGAGTTGGTGATTCTGTTGAACG
AGTTCCTCAATTTGctgaaattaagaaaaaaagaaatttttaaaagacgA
TGTAAATTTCCAAGCAGTTTTTCAAAGTTTATGCATACGGTTAACACTGT
TGAGTTTGAATTGGAAAACTTAGCTAAAGATACTCTCAACTAACCTGTCT
AGCTTGTTCGTAGAGTTCGCGGTAATTTACTTCGTTTGTTTTCTCCATCT
TGGTAGAGAAATGAAGACAAACAATTTGTCCTTAACTGACTTTCTTGATA
AAgtctttcttatttttttacaattttcacaaTTACTTGAGATGAAGTCT
CTCACTATCTTCCAAGGAAtaatttatcaaacaaaattatTCTTAATAAC
AATACTATCGACTACACTTGTCGCTTTCTGGGAAGATTTTGAAAACATTG
ATTCGCAAAAAATGTtaattaacaaaaaatatatatttgacgtcagtttg
aAATATTCGACGTCACAATTTGATGACGTCTTGTCCCTTTCGAAGTTTGG
TACATTCCATTTTCGCTAACCGTAGTTTTCAAACGCTGTGTAATAATTTG
TAATTACAGAAATCCTTGAAGGGTTCGCTTGCAGTGCCTTTGATCAGTAT
GTTTCATGCTTTTGTCTCTGTTTAAGCCCCTTCCAGGAGACCACCGCCAT
ATCTAGCGTGTAGCGAATACAGTAAACAATTAAACAAATCGACTGTTGGT
CAAGGAGAAGTGACTGTTTAAAACACTCTCTTAATTTGTTATAGGAAATT
TTGGACGCGGAATCGACCGGGAGACAAGATGCGAGACAAATACAATCTCA
ATGTTTTGCCAACTGGCTTTGAAGACGATTATGGTATGTCTTTTTATTGT
TACATTTATTTTGGTTGGTTCTCctttatcaattttttattgATTAAATC
CATTTCCCCTGCCACGAGCTATAGTTTAACttatatttttgcatttctga
aAAAATACCTGACTTTACTAGGATGCAGATCCTTTCTagatcaagtacca
ttttaagCACAGTCATGGATATAAGTACGGATTAATACTGAACCAATTTT
TTTGTAGAGTACGAGATACCGAACACATCACAATCAGAACTGGACACAAC
TCAGGAGACAGACACCTCCATCAACGAGAACAGCAAAGGTATTAGACTTa
gagtcgtttataatccgtgtgtaatacagtaataagGGTGTTATATGGTA
ATACGATAATTATTACGGGATAACATCAGTTTGTNTGGTCAAGGAGAAGT
GACTGTTTAAAACACTCTCTTAATTTGTTATAGGAAATTTTGGACGCGGA
ATCGACCGGGAGACAAGATGCGAGACAAATACAATCTCAATGTTTTGCCA
ACTGGCTTTGAAGACGATTATGGTATGTCTTTTTATTGTTACATTTATTT
TGGTTGGTTCTCctttatcaattttttattgATTAAATCCATTTCCCCTG
CCACGAGCTATAGTTTAActtatatttttgtatttctgaaaaaataCCTG
ACTTTACTAGGATGCAGATCCTTTCTagatcaagtaccattttaagCACA
GTCATGGATATAAGTACGGATTAATACTGAACCAATTTTTTTGTAGAGTA
CGAGATACCGAACACATCACAATCAGAACTGGACACCACTCAGGAGACAG
ACACCTCCATCAACGAGAACAGCAAAGGTATTAGACTTagagtcgtttat
aatccgtgtaatacagtaatgtgggtgttatatgataatacgataattgt
tacgggataacaTCAGTTTGAATAAACCTTCACTCGGCTCTCAATTTACA
AATAGGAATTTTCCCCATGTATTACTACGCTATTTTCTCAGCCAATTTTC
AACTTCGGCTTTGACTTGGAATCCGCCATTTATATTTCACCAGAGGTTTT
ACATCTATCAAAAGCAATTTCTACCTGATGTGCTGCATTTTCGTAATTTG
CCAggttaccgtattacttcgaataaacgccccttcttttaaacgcccct
cgaataaacgcgcctcctaaaaggaaaattatttaataaacgcccccctc
aaataaacgcccccttcaaATAATCGCCCTTTTAggagaggggcgtttat
tagaaacttgtgactttaatacttcaataccagtgttaactgggtttgaa
aaggaatattttagtcatttcttgtaaccagagcagttttcgaCGCAATT
TTAAtcgttgaaccaaagaaattttgcactaaaatcctaataaagaacta
aaacaaagggtatatttgctctaaattttcgactttagactaaaataatt
caataatCACCCCCTTCTTttcccttcttttaaacgccccctcgaataaa
ggCATcttctaaaatcgaaaaaaattaaataaacgcccaataaacgcccc
gggcgtttattcgagtaATACggtatacagtggagtctcatAACTCGAAC
TCGAACACGTACATGTACTCGGAACATTAATTTGTTTAAGGAGAGTTATA
GAGATTCGATTAAATGAGCCACTGGACCACTGGACTAGGTTTCAATGGCA
TTCCATCCTTACATAAGCCGATTCGTCCAACATTTTATATTGAATATGTA
TTTCTGTAAGcaatgtttgaaaataattcgaatttcaatatcgtcaaata
aaaattcttttgattctCAGGTGAACAAGAACAGGAAGGGAAGCCAGATT
TAAATTCACCAGTGGTCAAAGCATTGTTGGAACAATCCACTCTCGAAGTT
TCAAAACCCAAGGAAACAGACGTTCCTGTAAGAAGATTTTCACCTGTGTA
ctttgactctcgctaattcgaacttacTCTaatcatgaaggtaataaaga
tatagatggagagaaaacgtctcggtaatgacctgaATGGTCgttaaaat
cttttataaatctattcaaagcggcttttctttgatgtaccatcattgga
agcaaaacacatcaatttataactttataagaacagaaagagactgtttg
gttgattttgaaaaacttaattttgccgaaaatccttgttaaaatgcgat
tcgaaatagtttcaactgatgtaagactaaaagagtatattaatttcata
gggacacatttttgggctggcattttgttaacattgagagttgcatcaca
ttatcattgaaagtttcttatcttaaaatcttcacgtctaagttgGCAGC
GGTTTTCAAACTCTGACAAAAAAATANGTTCTAACTTTCAAAAAGATTGA
ATATTTCATTTTGAGTTATTGAGGGTTGCGAGTTATTTATGagggaaaaa
gaaaagaatacaTTTCATGTTAAAGAGGTCTGAGCTAAGAAGACTCAGCT
TTATTACATTCTTAGACCTTGAAATAAACAAGGAAAAATGTACCCGAGAT
ATTATGTCCTGTTGAAGAATATTCGATAATAtctttaacacccctgtgtc
agtgGTCCGGTCAGATTCGCCCCGGTCAGATTCGCCCCGGTCGATAACCC
GGTGTAAAAATCGAGTGAAGAACAATGGGAATCTCAACCCGGGCAAAAAA
CGAGAACTTTATCAAAAACCCCGATTTTTCTAAAGTGGTGAATGGCACAA
ACCCAGGGAAAAATCCTGCTNcttattcccaaagcaaccaaacagctgtt
tgcttccgatgataaatcagaatagaacaaaaggcattgactctccatct
atctttattacctacATGCTCTAATGGGGAATTTCGAATGTTCGAATTAC
ATagagattcaaattatagaaagtatattgagtgggtttctccttgacgg
ggactgggaACAAGTTCGAATTCTATAAAGATTGATTCGAATGATAGAAG
TTCGATTAAGAGATATTCTGCTGCACTTTTGATGAATGAAGTTCAATGTG
TAACTCAAGTTAATTTGAGAGGTTCTAACTTTCAAAAAGATTGAATATTT
CATTTTGAGTTATTGAGGGTTGCGAGTTATTTATGagggaaaaagaaaag
aatacaTTTCATGTTAAAGAGGTCTGAGCTAAAAAGACTCAGCTTTATTA
CATTCTTAGACCTTGAAATAAACAAGGAAAAATGTACCCGAGATATTATG
TCCTGTTGAAGAATATTCGATAATAtctttaacacccctgtgtcagtgGT
CCGGTCAGATTCGCCCCGGTCAGATTCGCCCCGGTCGATAACCCGGTGTA
AAAATCGAGTGAAGAACAATGGGAATCTCAACCCGGGCAAAAAACGAGAA
CTTTATCAAAAACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGACCCAGC
GACTGAAATCTCTACCCCGGTGGATATTTCTCATTTCAAAGTCACCCCGG
TGAACTTTTAAGACCCAAtgggttactgagacaggggtgttcagGGTGCA
TTTTGAACACTTTCTCTAGACTCCAAAATGTTAATGACAAATTGAACAAC
ACAATACCTaatcaataattatttttatgCTAGGCACAAATTTATACATT
CTCGCGAAGTAATCAACTGAAGAAGTTCCGTATCGATCCGGGAAAACAAA
GGCGGGCTATCGAAGAAGCGGAAAAATCACAATACGATCACGAGAGACAG
ATGGAAGAAAACATGGAGAAAACGAGAAGTAAGAAGCCTAGTTTATTTTG
ATTCTTATTTTGAACTAAATCCGAATGGATATGTTGTTTTAGGCAGCCCA
TCTTCcctggaaatgaaaaaaattcaacggAAAATGTTATGTTACCATCA
ACTTCCTCTTTTATCTAAATTATAAGATTTACAATTTTTAACCATCAGAG
CTTTCGTTTAATACACTAGACTAGCAACAATCTTTTGTTgattatattca
tgatatgcaacattGCAATATCTTCTGACATTAAATCATGgttccaacag
ctgattggttgtaagtggcGTAAAATTAGTCAATAcatcacttgcaacca
atcagctgttgggtccgtggaagacattgcaatggtgcatatcatgaatt
cttttttgaaatttgcaaaACAAGGACAATTTGGAGTTTCTTGCCAGAGA
GCGAATTTCATTTGTCTATTTGAGGTCAGTTAGACATTTGATAATTTATC
ACCGCGCTCCTTTATTTTTGTTCAGATCGACGTGCGATGGAGCAACAACA
ACACGGAGGAGGGTTTATACCAGGCGCTCCTTCGTTGCTTACCATGGATG
TTCCTGTACCCGACTTTTTAGAAGGTAAAACAACGATTTAGATTTTTCTT
GATATATTGAACTTCCATTTACCCACCATTCTAAAAGTAGTAGAAAGAGA
AAGATTTGAAAGTATATTTCAAAGTATGTGAACACTTTTTCCTCTATTAA
ATGatgtatatataatatatgtagCACCAGTACTTGAAACAGgcctcttt
ttcttcttcatcagttttcttcttcaatttgtaaaataatgaaataattt
taGGCTTATAACAATCCACTCATTACTCGCTTTCCAACGAGGTGGAAATT
TGTGAAAGTAAAGTCAAATTAAGTTTCCACATACTTTATAGACAGAAttt
agaaagaaaaattgatttgTGCTTTATCCTGAATAACTTTTTTGACTCGT
TTTATGCAAATTACAACAAAGCTAATCAACTGAGTGTTACTAGTTGATTA
CCAGGAAACTTGGTAAATTTGTCCACCTTTTTCTATAGGAGAGTATTGGG
ATGAAGGAGAAGAACCAAGTATGCATGAAGCTAAAAGAAGGTACAACCAA
CGTACAAGGCCCAATGACGACGGGATGGACCCTAATGCTGGACACATCGG
CCCTTCTGGATTCTATCACGGCCCTGATGAACATTTCGGACCTGGTGGCC
CTCATGGACCACCACCAATGCGTCCGCCCTTTGATGGAGGTCGATTTCCA
GGACCACGGCCTCGCTTTGATGGACCGCCGCCGCCACACGATTTTCATGG
TCCACCGCCAGGGCATTTCAACGAAGGAGAGGGCTACGATGAGAATTGGG
AAGGTGGAGGATACGAACCTCATCCTCCTTTCCAAGGACAATTTCAAGGT
GGACCTAGATTCCGACCACATGGTCCTCCTGGTCCAGGTTTTGGTCCTGG
TGGACCCCGTCCTCCTCGCATGAGAGGACCTCGCCCGAACTTCCACGGTG
GTCGCCCACCACGCCCACCTTATTGAAAAGTTAGATTTTCATATGATGGA
GAAGGAGTTACGGTTCCAATGAATGAATGGATGTGCTTCGGTGTCTTGTT
AGAGCTCTGATAGAAAATGCAGTGAGCCAATATTGCTGGTTATCTTCTTT
TACTTGGAGATTCCTTGATTCGCAGAGTTTTAGGAGCTTTTACCTAAAAC
AATTTTGATTATATTGTTTTACAAATAAATTCCCTCCTttagtaaatatt
tttaatcTTGTAAGTAAAGAGAAAAATGATgggattttatgaaaaaaatt
tattacttGTGTATTTCCAGTACCTTTTGTgcggttttttattttttgaa
aaagaaaacatttatatTTTCTGTTTCGTTAAATT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00050454TCONS_00050454Clytia hemisphaericatranscript
TCONS_00050455TCONS_00050455Clytia hemisphaericatranscript
TCONS_00050456TCONS_00050456Clytia hemisphaericatranscript
TCONS_00050457TCONS_00050457Clytia hemisphaericatranscript
TCONS_00050458TCONS_00050458Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00050454-proteinTCONS_00050454-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_172supercontigscaffold_172:116821..127055 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.89	13.49	49.59	41	65.63	47.34	37.73	43.43	22.03	31.29	24.81	20.77	25.89	29.52	30.55	35.57	32.78	31.05	13.98	12.96	30.08	32.3	36.02	32.28	42.74	47.18	14.43	12.26	28.52	32.04