XLOC_030467 (gene) - C. hemisphaerica

Overview
NameXLOC_030467
Unique NameXLOC_030467
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_139:116106..123535+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_030467 ID=XLOC_030467|Name=XLOC_030467|organism=Clytia hemisphaerica|type=gene|length=7430bp|location=Sequence derived from alignment at scaffold_139:116106..123535+ (Clytia hemisphaerica)
ATGGGAGTCATTAATTCCATTCACATCCGTGTAAACATCAACCGACTTTG
TATCTTAGGAATGACAGCCTCGATGACCACTTCAAAACCAGCCAAGCCGT
TGAACTCAAAGATTCAGCAGGTACATCATATCGTAAATCTTTCTACCTCT
AAACTTGCTGTTACAAATCGAGCTGTTTTGGTCCCTTTTTGTTGGAAACC
CACTCATCCGATTAACTAAGCCGTTTTTGATTATGTTTTTTTGGTAGAAT
ACAAGCTAGATAGACTATTTAATTACCTTTcaatctgttttgtttttcta
atcAAATTTCATCCTTTTGAAGCTCAAATTAGAGAGCATGAACCTTAATG
ACTTTCTTTTACTCTTCCTTTAGTGTCTTACAACGTACAAAGAATGTTCA
GACAAATGGTATTGTTTTGTGGACTGGTTTTGCCAATGCAAATCAAAATA
CAGTGACTGTGTAAGCTAAATttccttttatttatttgagcaGACCAAGT
CACCAAATTTTCgattaaaatcaattaaaactaCGAGTGCAAATTAACGA
TATAGACGTTTGCTCTTGCATATTGCTGATTATTTATTTTCCGTCAGAAA
TGTAGTCGAAATTTTATCCCGTGCAAGAGTGCTTTATTATGCAGGCACTC
AGCCACAATCTCACCGAAGTTAAAAGTTTGCTCGCACCAACTCCACTGGG
TTATACAAACTTCGAAGGTCTAACAATGGTTTCTGAGTCctcaattaaat
ttttcttttgccttttttttccattacattaaagagaactaattttggcg
agcagcaaatatcttttttaaaatttttcatattAGCACGAACTTATTTT
GACGGAAGGtcaaattttggcgaatgatgGGCTAATTCTGtcctattttg
ccttatttttgagcaatttttaataaatttgaGAGGTTGTTTTggcaaaa
tacaaaacaaattaattttggcgataGCTTATTTTAGGGAGTGAATAaat
tatctaattttggtgagaacttattttgacgaattttgtctaaactcgcc
aaattcgccaaaattagttcccttaatcTATTTATATTCTTCGGCTATTt
tgaaacgcaggtcacaggtcattgACACAGCTTAAATGacatctctaaaa
cagctctcttggagtactaaattttttcgaaacatGTCGATATCTATATC
CACTTACACCgttagcatcctattgagcaaTATATTGTAAATTAgtgtcc
cgggggggggtactagggttggtgaatgaggggtatgtgcgNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNtcccccccccccccggttcgGTG
TACACACCTCATATTTTGTGATGACATCATTATTTATATAGTTTAAGTGT
CACTTTATCAACATTTGGGATAGATGATcgataaaatcctttaaataagA
TATTTATTATACAACAATTCCATGACATATAATATTTTACGAAACATGTT
ATAGATTATATGTTACCTGGCCCGGTGGAACAATCATAAAAGTGGAGAGG
TTGAAGGCTCGAAATTAGATAAAATTCGctaaaaatttgcgaaaaaactT
CATTTGCTTAAAAGTTGGGGAGGCTGGAGTTTCCCCAGTCTCaccgcttc
cgccgggcctgtatAAGAatgcgttacagttttccggtctgtagtttgca
tgacctgtgacctgtgtctTAGACCTGTGAACTGCGTTTCGAACCGTTTC
GAATTAGCcgtacatttttttattttagtgtgACGAAGCTTTCCAATGTG
AGAAAATCGAACCTAAATGCAGTGGAAAATATTGTGAAATTATCAACCCA
AAATATCGAGATTGCTTGAAGGATTCCTTGAGATGCCCTTTGGCTCGTGc
gtaaaattgaaaatggttGTGTTGTGTTCTTACattcaaaagacttttta
aatcttataaaattactgataatttttgtttttgctgtGTTATATAAAAT
AGAGTGTCAAAAAAGCGTCACATGCTTGTCAATTTatttggtatattatc
aggTCAGGTTtcgttttttaatttcaaaagaaatctcttACACGTCGCCT
TCCACGACTCCTTCCCGTGAAAATTGCGTTAAATTGCGAAGGTGTGATGA
TGATTTGCATTAGCTTGCTAATCTATGtttctcaaaagaaaaaaaaatta
acattattcGATTTAGTCTTTATTTCGGTTTTTAGCGAGTACATTATTTT
CACTAActgtatttttctaaaataaaactTAAAGTATTTTTCATTAGAAT
TATGTTAGAACTTATTGGTGCGCATTGAATATTGATCGAATTTACCCATA
AAAATAAGTCTTTTATTATATAAAACGTTAAAGAGCTAAATATAGAACTT
TAAACCTAATAGTGAGCGCATCACTCGCATCAAACAGACAGTTTATCTGA
GTGATCTACTGATGGATCTACCACAGATATAGCCTATTTTccctattctt
ataaaaatcaaacCGATAGAATTGTTTGGAATAATATTGATACAGGAGCT
CAGCTTTCAAAACATTCCGaataaaaaacagttaaaaactaattttttgt
tttagtaGGACACTTTTTAATTTGACAAGCAGTGTAAGCAGTAACAAAAC
TTTCTCaggatcaaaatgaaaatctgtATACTCTTTGCATTATTCTTCGT
TGCTCACGGTAAGTTAGTTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNggggggggggttggaaaaaatctcaaa
acttaataagcgggggggttggaataaaaatgtcctgggtgaaaattttt
tgaaaaggagactaatacagcagaattgggacaaaaaagggaaccttcaa
aaatattttcccaaaaattaataagcggggggttggaataacaatgtcct
gggtggaaaattttcgaaaaattaattagcggggggggcggctattaggt
acccgagagtaacttTGATATAATGAGATTGATCAAATGAGATTTCTTCT
TACACAGTAAATAATAAGACCTTTACATACTTTCAGGAATATTTCAGTTT
TCATGCCAATGTAGTGTATTCTCCATACGTTTTTCATTCTTAAAcgactt
tcaaattttcagccGCTCAAACCACAAAGAAGAATGTTCCACAGAATCCA
AAAATTGTAAAGgtaaatgaatttgaatttttctgaggtcctataaatta
acctctgttcgtccgttcgtccgttagttcgttaccaacttttctcgaga
ttggctcattagtttttcctgatttttggcacaaagagttttttggactt
tttgcaaaatcctgtcattacttttttctgattttttgcacaatgatgca
aaatgacaatacctaaaatgtggcgaagcccgattttcaaaaaagaatat
gccagaaaaactgtttttttggcattttctcaagattttaccattggttt
tttctgattttttgctcaaagatgcgtattaacaatgcccaaaacatggc
cgagttcgatttttgagaaaaaaatttttccggttgaaaatgccggaaat
cgccgtgtttgcagattttcattgaattttttccttatattaatttctat
gttttttacacaaaaacattcacaggaaaaaattttcgatttccaaggtt
ggaaatttcaagttttcttagttggaaaaaagataaaatccaatggaaaa
tccaacctgaaaatgtggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaaatgtgggac
attctccaaggttggaaattttgcattttccatggcttggaattttcgta
aatccaggttgaaaaaagccaaaatccaagcttaaacaaggttggaattt
tcgaaaattcaggttgaaaaaagccaaaatccagaaagtgatggcagaga
tttggaaaagagatcttaaacaaggtttttgtttttgtgaacagtcactc
gctagcctaggctcgatagCTCCCGGTCAATCTNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgccaagatttcctt
tgcgaaccggaaagcggttggtagatcattaagcagacctatactacctg
tggttttgtagaggtctgcgattcagactaggtcAATCtatcgttattgt
tcgcacagatacgtggttgatcttagatcactcacacagctcagcaggga
actatttgaaactatgacacaagtaccctatgtgcttcactgtgcgaact
cattgcgattgaccgaggccgctctgaagagacgcctcacctgacggaaa
cttacagcttgactgctcacattatagcccaatatctaggttagctaacc
atcaaaacatttttgagcaaaaaatcgcttgtggttttcccaaggacatg
aatagaaaatggttagaaaaacgtaatttccacatggatttttaacgttt
tccaaactgtttggagaaacacaaatttccaacccaaaaagtctagtttt
caaagaaagggtctcaatcttagaaaaatgtaatttccacatggatattt
aacgttttccaaactgtttgggagaaacacaaatttccgacccaaaaagt
ctagtttttcaaaatttactaaaatatgtatTCTCACATcgactgtttgg
aaaataaaagtttcccacccaaaaagtcatgttttccaaccagccttgga
aaattgtcatttctacatggttttttttaacttgatttttcaagggcatt
gctttattctacaaaacctatgggtaatttacgttttccaaatcagctta
aagtaatcgctcaaatttccaaccttcaattataaaaccaaaatttccaa
ccttggaaatcgaaaattttttcctgtgattattgataacaatgctcacc
atcaagcatgattcaattgtcaataaaactgatttttgcgaccagaactt
tctatttatttttccctaTAACCCTTCCCTGTCCTCCCATCttaacaatc
aatgatgaatttattgcgttatgcattttcgctaaacgctatattttctg
acagattttttttcatttttctcctcgcattgctatctaactttcatcat
caggtaggtccattcagcatctagcttgttattgTTGAAACGACAAGTGA
ACAGATATTTTGCCTACGATTTCCACAATCTTTGAAGCCTACGAAGCATG
TTCTTATATTCACCTatattttgtgcaatttccctaagaaatcgggtatt
TTTAGagccataaaatgttcttaacatgttcttaatgtTTTGGTCACAGG
TTTCCTTGACGTACGTGACGAATTCGTTTCTATTTTGGGCAATGACCTGA
CTAAAGCATTTTTTTGTCAGCAATAAAAGCCGAGTAAACATAGAacaatt
catttttatttatttacttttcagtGTCTTGACGAATACAAGGAGTGCAA
GAAAGGATTTTTATGTGGTCCGTTAGATATCTTTTGCGGATGTAAAAAAC
AATACGCCAAGTGTGTAAGTTGACTTAAAATGCCACTTGAGTtgtcaaaa
tgttttttgagaTGGCTTTTTAGGCTCTTTTCTCTTCACCTCCTGTTCGT
CAAATAGTTTTATACCCCTTATTCCTTAGTATCACTTACTGCCTGAGGTT
TCGTGGAGGTTCAGACTAAAACTACCCAGCTTTTTCTTTAATTCTTTCGC
TTTCTCTACAATATTCGTAATAGATACCCGAAACCTTAAAAGCTGGACAG
AAAAAACAGCCCTGTCTAAGCCTCCATTTTTTATAAGTAGCGCGGTGGAA
GTCGGCACGCATGGCAATCGCTCCGGTGCCGAAAGACACCGAAGATGCAA
CGTGCTAGCTTCGTTCGCATAATTGTTCCTAAGACATTGCTCCTATGGGA
GCACCAAAAATGACAGTTTTGGAAAGTCACCTCCCCAGTTTATCCCAAAA
TTTGTCGAGCCACTAGCACTACGCTTATGCTTTTTATAAAAAGCTTATga
cacctctgtctcacagccccactggaacttttttcctcagtgggaataaa
aattccaattgaaatcccgatggggatataaattttattgttccgaggtt
aaaaaatccagtggggatggttttgaagtacaacttttaaacattgaatt
ttgaatgggaatgaaatcaaagtcattttccagtggggatgggttcccag
tgggtctgtgacacaaaaGTTTGCAATGATCCTCTACCTCTTTGAATCAA
TATTTATACTTGGGTACAGTCTGGTTAAAGCCCTGTTTCGAAACCATAAA
GACAATATAAATAGACTTGGTTTTCTTATCATAATCTTTTCCTTTTAGTG
TGACGAAGCTTTCAAGTGCGAAGAAATCGAACCAAAATGCAGCGGGAAAT
ATTGTGAAATTATCGACCCTAAATATCGAGCATGCTTAAAAGATTCCCTT
AGATGTCCTTTGAGTCTCGCTGAAAactgaaatttctgaaagttcACCAG
AAACCCATTGTTTATGTTTGTTATAACTTTAAATGTTACTTTTTATTATG
TATTGTAAAAAATTTCCATGCACTaaaatatggtcaaaaaagTTTGCAAG
ACAAGTATTATCGTCCCACCCACACTTAATTAAGGTGCTTTTAATGAAAT
GTTATTTATGCCCGTTTTAGCTTTCATTGC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00047867TCONS_00047867Clytia hemisphaericatranscript
TCONS_00047868TCONS_00047868Clytia hemisphaericatranscript
TCONS_00047869TCONS_00047869Clytia hemisphaericatranscript
TCONS_00047870TCONS_00047870Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00047870-proteinTCONS_00047870-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_139supercontigscaffold_139:116106..123535 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.22	0	0.24	0.72	17.8	18.16	145.44	164.34	296.92	182.27	290.2	342.54	107.79	93.46	215.7	249.9	36.66	49.15	145.11	203.69	101.97	95.9	50.61	56.46	44.31	41.24	8.01	15.82	46.53	48.74