XLOC_011900 (gene) - C. hemisphaerica

Overview
NameXLOC_011900
Unique NameXLOC_011900
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000380:256657..267298+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_011900 ID=XLOC_011900|Name=XLOC_011900|organism=Clytia hemisphaerica|type=gene|length=10642bp|location=Sequence derived from alignment at sc0000380:256657..267298+ (Clytia hemisphaerica)
CAACTGAAGAACTATACTATAAAGCATCAAGATCTGAAGTGATGTATATC
ATCATGTATAGTATAGTATAAACTGAACTCACATTTGGTTAGAAACAGAA
TTTATCAATAATTGAAACTTGCATGGTTATCCCATCATCCATATTTTATA
AGCTGGCAAATCCATTCTACGTACCCTTTTAATAGCGTTGTTGTTGGATT
ATTTGATTATTATTGTCGAGATATGTTTTTGTCTATTACTCATGGTATCA
TTGCATTCTTGACCTACATACAGCAGGTACCTACCGTAGATTTGTCTATT
ATTGACATGTCTCCTTTAATTTTGGCAcatttagtagggggaaatacctt
tcccgtaattcaaatttcccaGAAATgacccgggaaaatgtgcgctccac
cgttgtgtataaaattgtttcggaggtaaaaaatgtgtttttgcctgcga
ggggttagggaaagtgggatttgagcctctaacttttgacagcgaccttc
ttttggcaaaatattttcagggtggtataatatgatgaatagattgaaca
tactaaaatttgaggggattttgtttgACAGAACCAACCTTCCCTAtggg
aacgcaggcaaaaacgggtttgttttacctccagagaccaaacggtggag
agcatcaaaataatgtgcgcgcattagttttacgaattacgggaaaggtg
tatttgtTCGTTTTTTCGAGGTCGCTCCCGagagaccttttttcaaagag
gccaccctgttgaataagtaagtaagtaagtaagtaagtaagtatttatt
taccatttaacactacagaaaagatacaagtgatgatatgcacaaaaaat
atatggaagGAGACCGCATGtcaataattatgtagtccagcagaaaaaaa
atgataaaaccatgcataattattacaatatgcatgatacagtaattatg
catggctctatcattgtttttatggctggactacataattattcaacagg
acgtcctctttgaaaaaaggtctattgttttggtcaaagcaattgttata
catttttggaaagctaccgtaagttagtctaatgtcgacatccgtcttct
aatttcgacacccttttttagagataggaacaatagaaactgaggaaggt
cagaatcgctgattgactttcATTAGCATGCTGGGAAGAAGTTATATCGG
Atcgcccaaagttaccttcatgtttttattttattttcttatctctgatc
ctgtctttctcttttctgactgtttgagtttctgagacttagattctcat
ttctgactgagttttcatgcctatcaatcatttttccatcaatttcgacc
agtctaattttcgcaccgagtgggattcaaaccaccaccaaagaaagacc
ttcgaattcggaagccagcgctctatccgtNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNAATCAATTAaaacaatgtaacaaaaaag
TTACAGAATTATGTCAATTATGAACGACAGGTGAGACTTTTATTTATGGC
TTTTATTCGCCAATACGATGACATAGTTTTTGGCTAATTTTACGAAAAga
aacacacccctgtctcacataTCCCTCATATCTGTTAAAGAGTTTTTATG
AATACGGCCGAAGAGTGGGGAAGCGGTACATCATATTATCTCAGTGACGC
TTATTAAAAGGGACAAGGGGTGAAACTTTCCACCTCTTAGCGAGTTTATT
TCGATTTTCCTTTTAGTTCAAGCTGCAAAAATATCTTGTTTCGATGTTTT
TCCATTCGATgtaatttttacttaaaaaggaCGTGAGAATTTCGGTACGG
TTTTCCTTTAAACTACCTTAAATTTCCATTTGATGAGATAGGGATATGGA
GGCCAAGTAGAAATAAAGAGCATTGAGAAATGGGAACTTTCATCGGGTAA
AATTTGACAGGCTCGGAGATGCTTCGGTCGAGGTCTTGAAAAGGCTGAAA
GATGCTTATAACGATACTAACGGTGTATTTTACCTTTTTCATAGTCCACC
TGGATTTCAAAACTTcaccgagacaggggtgtataaatcttacattttac
TTTAAGGAGACGGGGGTGTgtaaatgttaatttttattccCAGTTTTACA
GATGTTATTTTCTGtctataaactttcgcgaatggcccttttaaaagaat
tttcaaaaaatgctgtgGCAAAGGAATTTGTCCGCGCGGTCATATTTTTG
GATGCGGAACATACGAAATTTAGAATACGGGCATTGTGAGATAACGATGT
TTCAGAACCCTGATCTTGCCACTCCATGCTCATTGCTAGGTCTCCAGTGG
TCTAGATTGGATGAATCACAACAATTCTTCTCTCGtgctattttgttttt
ttctttttcatttcagtcattttcattttttatgggaaCACAATTGCAAT
ATCATTTATCCAGATGACACGTGTATTTTCCACATTTCCACTGTCGTAAT
ATCATAATGATACACATTCATTGGCGAAGTCAAGAATCTGGAAGCCTTCC
GGAGAATACCTGTGTCAGAGATCCGGTGGAGCCCtgcaaaaccatcccca
ttgtAAACTTCGAGCTGGAATATAGATTTTCTAACCCAATCGGGACAATA
CGattagatagaaattttcatccacactgaataagcaaaaagctccaccg
gggcggcATTGAGACAGTGGTGCGTGTGGTGAGAGAATGAAAAGAACGcc
cagaaagaaaagaaagaccaaCGAAGTTACAGTATATATTCTATTATAAC
TTGATTGTAATGATCAGTCCCTGGTAAGAATTCTTGATATGATCTGAAAA
GAtcgttgaagatctttcaagatctttaacaagtaagaatcttaaaaaat
ctttgtaagatcttacaacgATTCTTAggcaatcttgaaaatttcttcca
acaaaaagatctttaaagattttgtaaagAAATTGTAAAGAGTTGTCAAG
ATTCTTCCCGCATATTTATAGtaagaaaatttattatttcTTATTAAGTT
CTTAAGCAGAATCTTGAgccataaaatattttaagattcttTGCGTAACT
TATAACGTttttataaagagactttccaaatcttaacTAACTATTATGTA
CAAAGAAGCTTTAAGATTCTTAGTGGTTCTTATTAAGTTCGGGTTAAGAA
TCTTAAAAACATGTAAATTTCTGGTTatgattgtttttcataagaaggaG
TCTTTAGACTCAAGGAGAGCAATCTCTTAGGATAGTATTTACGAATCAGT
TTTTGGTTAAATTCGAAATACGGTAAGTTTTTCTTGTGTGTGTTTGTTAT
CATTGATTGTATTATTAATGAAATAGGTGATTAATGAGAAGCATTCACGA
GGTCATCGGTTGAATGATGTTACTCGAGCAAAGCTTTCGGCCCTTATTCA
ATAACTGAAGGGGGATAGTAGTAGTAAGATTCCgtcagcgaccgtagtgc
agtggtagagcatccggctacggtgcgcaaggttgtggttTCGACCCCCA
GCCGGTTCaaaccaaagattcccaaaatggtacttggtaCCTCtgtgctt
gatgctcagcaattaagagaaggatcaagggtaagtggagctatcaaggg
agaaagagtgacgccctcccctaccttcgggtagaacTGCTGGCGTAGAC
TTATTTTTACTTAAGATTCCGGCAAGATTCTTGAATCACTGTAAGGGACA
AGAATCTTAttcaaaacttataaaaaagtctTATCAGATCGtcaaagatc
ttgaaagatcttgaaagatcttgGCACGTTCgtagtaagaaactgaaaaa
gaataagcaaagtttcttgataagatcttttcaagaacttttcaagaatt
tttaccagggagtgacctcatttttaattttcgagccacttttttaaatg
ttttatgtatttcgtaacgtatattattttatgaattgttaaatttaata
aaaaaggtggttcttattttcttcttcacgacTCTCAAGCAGCACGCTCT
CCCTGAACAGCTCATAATGGTAACAATCGGTAACTAAATAAAGaagaaca
attaaaaatacTATCATTCATATGACCGTTAGAAGATCCATGGTACAGTA
GATTTTTCAGCTTCAaactttagacaaattgacagTCGCTCAAACTCAAA
AAGCTCGTTAGATAAACTGCCGAAGTTACGGTGACAAGAAACAACGCACA
CTAATTGATGAGAAGCACAAAAAACAATCTAGATTTCAACATAGATGAGA
TAATTGTTTCATACATATAACAATGTAACTTACATTGTCTCGGACACTTC
TCAAGTTTAGTGAAAGCAGTCCGCAATGATTATGTGATATTGACAAAACG
TCTCGCTTCATTTGATCCGTTTTTCCtgaataaaaataaagtaaaaacat
cATTTGAACTTGAACTTTCAAAGTATTGAAATCAACGGATCATCAGTCGC
TTTTGTTAGCAGTGAAGTAAGTAAGTCTATAATCTTTAGTAAGAGAAAAC
GGATATGAATTTGATGCAGTGGTGTATTTAGGATTGTTAGGCATCGCTGA
ATAGTATTCTATAtgatataaaaaagattgaatgggtgaaaaatttttca
atgggCACAATACCTTATTAGATTTAAAGAATGAatcttgtaaagaaaaa
atgaaagccccgttcatcttcattttcccccgttttcactttaaagttga
aattggCGTATTTGTCTGACGCGTTCTAGCTCATCTGCACAGAGTAGGGA
AAAACccagggggtacttaggcaaatggaagtacggtatgtgccaccctt
aagagtaccttttttggataaagtccgggtaagggtcggaaaattcacaa
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAatgtcgggcggcacccccc
tcGTCAGATCGCAACCCTAGGATCCTCCCCCCGGGGGAAaacccgttgca
aatgcacaccCCGTGCAAATGCCCAAGGATTTTTCTGACTGCCAAATATA
GTCCATCTAAAATCGATGCAAATTTATGCCAAATTCATTCCATAAAGGCA
GGTGTCCACTTTCGTGCGAAGCATTTATGACATTAAGTTTTTCGAATATA
GTCGCCTGGTATTCAacttttatagcttaaaaaGTCACTCACGCATTAAA
TGTAATGCGCCGTTTTTAATTCTCCTTTTGGAAAACGAAAGCTGTTATGC
AAGTTACGATTGATTCGTTTTTTATACTACTTAATTGACAAGGAATTTAC
GATGTTCTCTACCGTTTTGACTTTCTTGACGTCACAACTATGTGTAAGTA
CTTTCGTTTACATAATGAAAACACACGGGTTTTACCAAGCTgtccgttga
gccatcgccgcacagcaaactcacgcaattcataacatgttataccgaac
tggcaaaagacgggggtaatgttattataatatgggtaaaagtacacctt
tttttaacctgactgaaattcgagctgttactagcaaccctgcggggccc
aaggcgccgagtatgcacccggcacagtgacaaggcgttactagcaaccc
tgaNaacctgactgaaattcgagccgttactagcaaccctgcggggccca
aggcgccgagtatgcacccggcacagtgacaaggcgttactagcaaccct
gaccctacctaactgttagtcaatcaattccaaacaacaaaacccccgga
aaggtgactatcagcgatccgtggataagaaaataaaataaaaaaatgaa
ggtatcTTTGGGCGATCCGATATAACTCTCTCCCGGAGAGGATCatatca
gtgatttcgaccttactattattcctatctataaaggaggctgtcaaaat
tagaagacggatgtcgacattacttttaggttccaatttttttttggaca
ctttggtgtgattttcaaacaaatatgacggtctcaggcaaaaatcgtag
ggtcaaaaattaaaaaaaattttagctcgagaaaaaaaagacctgttgta
tatttttggaaagctctcaaaaaattaagattagagatatattgcaagta
taggtgatttctgtacctaactcgaaaTATATATCAAAATTACCAATATC
AATCATTAAATCGTACTCttcctatcacgtcacagattgttgatgTATGA
GAAGTCATCACTAAACACTAATTAACATGCTTTCCACACGAAAAGATatc
caaattaaaaaaactttttgcgtGCAAGGGTTTTTTTAGTTGGCCTTTAC
CGTGaaccaaaaataataaaaagaacctgGTTTCCTTTTAAATTTAATGT
GACTGCCATACCGCAAACAACTCCACCCAGCTGTCTGGgtgatcaaaatg
aaaataaggaGACAAATGAGTGTGCGGCCTCTTGGTGCCTCGAGTGTGTG
CTTACAACGATAAGTAATAAGAAAGCGCGCAAATAATTTTTATCACATGA
CTGGCAGCGTAGTAAAGTTATAAAATGTTAATGACGGACACAAAAAAATG
TGCAAGCACGTTTCATGTTGTTTGAAATGGCTTCCcatttgaatgttttt
tattgaaagaattgAAATGTTTTAACAGAACTTCTCgcttgatggatgaa
cttgttcgatataAGTATATTTACCAAGAATTTtattaaaggtttgtttt
tactATTTTGCAGATCCTGTGTTGAGATTAAAGGGGGTGTTGATAATAGA
TGAATCTACAgtataatgcataatgcatccTGTCAGTATAGCCCTAACTC
TCCATACAAAATTTacgggaaacacatatttggatTTTATACTCAATGCT
GCACACAAGCACAAGAAGCTAAAATCCCACAGAAGCAGGATAAAAATCAG
TTTGCAAAAAAGAGTCacatagaagatttttcaaattcacttttctattt
tccctttttttttttgcaaaaattccagaaataaaaataaagggaTAGTG
ATAATTGAGCACTACagtatccattgatgatccgggGCACTATATATATT
CTATCAGTGTAGCTCTAATCCTTCAGAGAAAATACAATATAAAGAAAACG
CATTTATTGGACTTTTCTGTGGGCCAATGCtgcactttcgatttcacctA
AATGTGATTGGTTTGAAAGTAGATGAGTTTTAAATCATTCAACATGACAT
TGcaactagcaaaaggtctattgtgtaAAGCTTTAATCACCCTGTGTACT
CCTAACTTtagaaaatgattgaaaatgtTGTCCACCCGTCCTGTGTGAGG
GAGTTTGCAGGTGTTTTAACTCAAAATGATACCCTGGAGCAGACAAATTT
GAGATCATTTGTAATTCAATTTAGGCAGAAATAAGGTGTTGTTGGCAAAC
tgaacaaaaaaagttttgcaGAGAAAACACTCAAACTACTGAAATCAAGT
CAAAGTATTGCAAACATTAGTGATTCTAATCAAGGTTTATTAAAGGTTTT
CTGCAAAGTTCAAAGCTCAtttctttaaagggataatcagatggtttgag
atatttggcctgCAGATCCCTTTCATGGTCCATTTTTGTCAAACTGTTTC
ATATATCATATAAGACATTCAtgcttcaactttttttcacttttagcAAG
AAAACGATATAGTTTTTTAATGTAAAGAACCGATATTTTgagaaatcaat
ttttggaaagTAGTGAGGCCAGTGTGGGCCAATAAAATAATTGTacactt
tttgcaaaaaaacattaaatttggCACAGACCTAAATAAACAATTTCTGT
CCGGgagcccaaataaatttttcctttttttccctGTTTCAGCCCACTTT
CTGCAGACATCAGCGAAAAAATGTTAGCCTAGAGGTCATCTCGGAAAATA
TGGCCATTTCATATATCGTTAGATCGGAAATTGTATACGTAGTNAAAATG
TTAGCCTAGAGGTCATCTCGGAAAATATGGCCATTTCATATATCGCTAGA
TCGGAAATTGTATACGTAGGTTCCAAAAAAGGATTATCTAATACCGTAAA
AATCAACccaataaaagttattcatcCTCTAACTAGGGTTAATGAATAAA
AGTAGAGCCCAGACCTCCCAAACCAGCCCTTACAGAGACTAAACTTTCGA
ATTTAGGAgcgaaaaattggatttttgcaAAGGAGATTAAATTAAGCAAC
CTTTGACCAAGGGAATTTAAAATTGATTGAAGAAACTTAATAATTTTCCC
TCATTGTTACCTTTTCTGGGCAAGAACATTATATGGCAAATTTGCGCAAC
CACTGAAACCTTTTCTTAGGGAAAGCCTGGGAAAGCTTGCATTGTTTGAT
GCAGTGATCATCTCGCAATCAGGGTTTTGCTTAACTGGTGGTCTTAGAGA
Gactcaaaatatttattattattattatagtattattattttatgaccta
ataactaaaaatgtttatttttgggaACTTGCCTACTAGTACTGTAAAAC
ATTTTATTGATTTAAGACAAAGATGGCACACTGTATCAGACGGACTTGAG
TAAGATTAGTAAAATCattttgataaattatttctaatttttcagaatga
tggcaaaaatgaagataCAATAGAAGCAGATGATCCCTTGGATGAAAATG
TATGTGAAATAAATTCTTTAACTTTTTAAGCCTTGTCTTTTCCACTTTGA
CCTTGTCTTAATGAAATGCatccttttaaaaaaagatgtAAGGGTTAAGT
AGTAACTCAGTATATTATTTGTTAGAGTTCAGGTATTGGTTAAAGAACGC
AAAGCAAAACAAGAATTAGTACACGCTTAATTAAATGGAATTTCAGTTGT
TTTTCATCATCCAATCTTGACCACCCACCTGGCATTGATCCCTACATCAA
ACTACCGATCCGACCCCACCTTAATGAATAAAATTGCCCACAGAAAAAAA
CTCGAACTTTTACTTCACACGTATATTACAATCCTACTTGGATTCTTTTT
AGGATAATCCTGACGGTCAATATCTCAATGTCAAACGAAACGATGATAAA
GTtcaattaaaattaaatatttcttgGCAGCCCAATGGTTCAAACGAATA
CATTTCAATCAAACGATATATTGACGCAAATTACCACAATGCAGAAACAG
TGTTTCAGAATGCATTAAAAGATGAAATATTTACTTATATTGTTGAGAAT
ACTAAAGATGATAAGAAAGATCCTGATTTGATAAAGGCTGTGCGACAAAT
GATAAATACTCCTGAAAAGGTCCCATTCTACAAactatatcaaaacaaac
tgaaTAAATATGCCATCAAAGCCAAGCTAGACAGAGGTGATGACCCTCTA
GCGCAGGATGAAAAGCTTGGTGAAACATTTTTGCATTTATTGTGTGGTGG
AAAAAGAAGGGATAGGCAAATTATGAGAGATATTGTGACGATGATTTGCG
AGAAAGCGCCTTACATTAAGACCAAAAGGTCCAAAAAAGGCAAGACCCCA
TACCAGCTGGCTAAAATGACACATAAAAACGATATCCTACATCTATTAGG
TAAGAATCATATTACAGTAGagtttccttaactcaaacgaTC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00021263TCONS_00021263Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00021263-proteinTCONS_00021263-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000380supercontigsc0000380:256657..267298 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.6	1.41	0.68	0.22	5.32	2.87	5.2	4.08	2.73	2.6	2.98	1.89	2.46	1.72	1.45	1.92	1.61	1.11	2.55	1.39	1.54	1.41	1.83	1.87	1.66	2.87	0.82	1.17	0.44	0.34