XLOC_006846 (gene) - C. hemisphaerica

Overview
NameXLOC_006846
Unique NameXLOC_006846
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000141:188614..199400+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_006846 ID=XLOC_006846|Name=XLOC_006846|organism=Clytia hemisphaerica|type=gene|length=10787bp|location=Sequence derived from alignment at sc0000141:188614..199400+ (Clytia hemisphaerica)
ctCGTAAAAAAATTCCCAGAAAAAATGTTTCGAAAATGTTCTAAAATGAC
GTAATCATTTTTTCTTGGCCAATCAGAAGGAAGTGTGTTAGCCAATCAGA
GGGCACGGCGCGTAAAGGCAAAATTTACGCAgcaagtcaaaatcaaaaca
ttcgaatcgttCTCCAGCCACAActttttggatttcaaaaaaccaaagcc
tttttatcattttattaacttgtttttaaccttttttattcGCATTTTAA
CACAATGACGACTTTCAAGAACATCTACTATTCAGAAAGATATTCGGACG
ATGAAAATGAGTACAGGTAACGTAATTTCTCAGCATTGTTTTACCTTTAG
ACTCTGTTTTTTCTACCCAAACCTATTTTAGGACATTTTTAACTTAAGTT
TTGCTCAGAAAAGACAATGCTCCATTGGTTATCAAATAAAAAGGTTTTTA
AGACTGgtaaaaaaataatgttttagtCGTTCCACTGCAGTCAGGGCTtc
cttggtcttttttaacattagttcggattgaataaaaacatacctgataa
ACACAACCACGCCACACCTTCTGTCATGCGTTTCGCTTTTGCTTAaggta
ggttttaaaatccacaggTACTGAACCTCtaatagctttatctgaataaa
tcatgttgaaaaccttctgtcgTCAGGTTTTCTTCGGTATGTTTTTTATC
AACCAGTTTCCCAGATTTCCCGATAAcgcggcaatcaaaaatatgttcta
ttcgggtcctaaaacatcttcaaatccagtcggtcggtcggtcggtcggt
agtaaattttgtcggatttttaagatctagtaaatcccgatgaatcaagt
cggcaatcaaccGAATCTTAtatgccgccatctttaatttgccaaactaa
atgtgtttgtttttgtatttggTTCAGTTACAgaaggctttagaggccta
ttctcgcaactatagacgcttactaatgagcatcccgtcagcaccttgaa
ctgactacccaattcccctcacatggcatgggttgacccgggcgaaggaa
cgttcacttgccaagtgaactgccgcgagtgggaatcgaaccctggcctc
ctgcacagaagccaaggtcgactaccactataccacggcaACATGCGCGC
GCGCATGTGTTCACCTTAAAGTGGCCCTTATTTTCGGCCCCCAGGGTATT
AGCCCTACCGCGTTGCTGAATTttacatagtgtcctccccccccctttat
aaagggggggggattctgattttggccttttttttaagtatgggggaaaa
tgaaaaatttgaaatttgctgggggaaaataaagagggggaaaaaccata
aatttaggagattttgactGGGGGAACTTCNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttccaaaattt
caaacttgatttaaggcatttttatgttaaccatatggggaaccgcaaaa
tcttcaaatagctgggggaattcaaaaaagaggggggaaccaaaaaattt
tgaaatatggtgggggaaataaaagagggggaatggagaaaaattttgat
ttttagtgggggaaccaacccaggaggacactatgattttgacatgaaaa
tttcaataagggtacatgaaaaaacNCTTAAAGTGGCCCTTATTTTCGGC
CCCCAgggtattggccctaccgcgttgctgaattttgacatgaaaatttc
aataagggtacatgaaaaaacttgaaagggactcaatgtgggttaagtaa
acaaaaaataatgattcaaagacaAGCTCCTTTCACCCGTGCCCGCCATA
ATGGGAAAGATCTGAACCTGTGAACAGCGCCCATAAAAACCCGNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgacctggtagggttgg
gtatgggtgtggtttgggtgtggttacgtatcagattggctaggaatttg
gttattatcagttagggttagggttagagCTCGAAACAAGNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNttgtttcattaaaacctcagtgcgcatgcgattt
atctggagaatttcaatattcaaaacaagagcagtgctcatagcccgaag
agtaggggttttacgctcgaaacgaaggaagatatgacgtagcctagaaa
caagcactcttttgtgattttctcttaatacagtctggtctgtagtttgt
acagtataaatagccgtcagaaacgcTGTctcggcatgaatccgtggcgc
agtggataaggcattgggtgtcaaaacatcggaactttgcatttagtggg
ttcgaatcccaccggtccCACCggaccggtggcgatctgtcggtaagtca
ttcagtaagttagaaaacatagaaataactcacatagaaccagaaagtca
gataaactacaaacaagagactggaaagtacgaaataagcccagatctgt
ctttcgtctttatgaagaagccacgacccaCATTGAATATTCTTGGACCT
GTGTCTGAAAGGCAGCTCTTCCAAATGTTCTTGTTAGTTGTATTCACTGG
TTTGAGGTGGCATTTTCTTCCCAGGCGTTGGTTTGTATATGAATAAATAC
CGCCTTCCCCTTTaccatagttaaaatttggcacCAGTTGTTCAATTATA
CACCATGTATATATAATTTGGTATCTTTCGCGTCTTCTCTCGAGACTGTA
CATATTGAGGTGtttgagcttctcccaataATTCAAATTGGGTGGAAGTT
GGATCCCTTTTAGGCTGGACTTAAACTAGCTAATAGCCAAGGCTATGATG
CGCCCGTTGCAATGTTTTTCTGGGAAACTGACGTCGGTTAGTGATaacca
aggaaacaaaaagCAGGAGGCCCAAANNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNCACTCAAAGTCATCTAGAAGAAATTTAGTTCagtaaaacataaataaa
ataaaaaaagagataaaaTCGATTATCGATTGCAATCAATGAGTAATCTA
GAAAATATTGATTGCATTGATACATAGTTTATTGAAACAATTGTGAGTAT
ATGTTAATTATCTATCAATTGCGTTAATGTATCAATTAGTTATTAAGTCA
GTAAAAATCAATAGGTAATCAATGTAATGTACTTAAATTGATACTGATGG
ACTGCAATCGATATTTAATCATAATTGATTATTTATCAATCATAATCAAT
AATCGCACCATCTggatttttgtccataatttgttgaaaaatactttggt
ctTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAATAATCGAGAACAAACA
TGAATAATCGAGCCGGAAAACTGAATCGTGAGATTTTCCCTAGGTACTCC
TCATTAAGGCGCCCTTGACGGGCgcaaaaattgttggtttgccgtcaccc
gaccgaccctacctcgaaacctaccgacccaaaaaaatttattgcaattt
taaagatttttttctttaaaaaacttcaaacaataaaaaatcaaaactcg
tatcttgtttgtctcaagcataagaatcgtaaattccctgctagcacttc
tgtttttgattcaaaattacctaaatgtaaacaaactggtaacccttcca
tggacaaaAGTTTCATAAatcgcaaaaataaaaaaaaattccgaccaacc
cacccacctccaaaatctagggtcaggTGACGGCAAACCACCAACTTTTT
AAGCCCAGCCCTATAAAGGATTTTTGCAGATACTCCAGTTCTTGCATCAG
GGATCGCTTTGTAGGAGACCACACAGATTGTTGATataataccgtgagtg
gtcttAAATCCGACAGCGCTGCCTAAATCCGAtagggtctttcaaagata
caaactaaaataaaaacgaacctttcgctgtgacgcaacgaagataccaa
agtgtcaactaaactgagagatttgatacattgaaccaattgaaccaaat
ataaataacaataattgcttcttatacaaaatataattttttattacaat
atgtacaacgtcataaatgacaacttAGTtgcagcatcataaaaagtaat
tattttttacaattcacactttttaaattacattaattggcatcttgaca
ttatagccatcttgttagatgttttgtttcgagagttcttgcaatagttt
atcgttcaacttggagagggaatgtttgtaaacatagaatttatttcata
acagttatttggggggatcggaattaggcagggctgtcagatttagaacc
actcacggtatgagaaatgtgaagtgttattacttatgtttgaaaaggaa
actttaacgatgtagtaatcactaaaaaactaattagcatgctatcaacg
aagatgcccaaattaaaacaacattttgcatgCAGGGatttttttagtag
acctttttaccgtgaaccgaaaataataaaaagaacctgGTTTCCTTATG
AACTTGATGTGAACGCCAACCATCCCGCCTggtgtgctaggtgcggcgcc
tagaagtttaacgtggcctcttagcgcctagagtGTGTGCTTGACTTGCA
ATAAATAATAAGGACggggaaaccaggtcgactaagcacgcgaattattt
ttatcacgtgacttgaaacgtactaaagttgtaaaattttaatgatagac
tctcgaaaattgagtagaattgagtcggtgagttaGTAAATTTATtggac
tttcaaaaattttattattgccaattttttgtgagcaatttctagcgcat
ttgtaacattttaactttgtttatcattacatgcgtcATTTTGGGTCGGA
GGTGacagtgttcaaaggttaaggtcataatttgaaaccacccataacac
acggttgttttggctgctgactggctggcagtttccttcaagaatacact
gAATTTCCCAACTCCAAATGACAGTTGATGAATTAGCCAATGAAAGTTTG
TTTTAGTTTCTATGTTCAAACTGCTATAGAAAAAAGCGCGATTTTTTATT
GTTCActcatttttatttagtgagtGAGTCCTGCACTTTTTCAACtgtca
cagctcgaacccgtcttgtgtacatcaaattataaaaaaacacacaacAG
GTCTcctgaagatatttgtgattgcggCCTAATTAGGGGTCCTCAACAAT
AAACTTTCGatttttttatcggcattgggccaATAAGCTTCAGACCTCCT
CccccccttgctcttatcggccaaaatttttcaaaacacaatTTTCTTAA
ATCATGCCTACCATTGTGTGATCTTGCCTTCCCACTCGTCATCgttgaat
ttttgtctatttttaccAATCAAAACGAAAGTTATAAAGGCACAATAAAG
TCGCAACATGTTAAAGGAAAAGGCAGCGCactggccaatgaaaaaagggt
ttttaaaaacaaataactttgatagatttaccttccccaaacattgaaga
agcatCTACtagttaaagtaaatgagagaagataagataaaacctgaaaa
tcaaccagaatttacaacctttcgtccaaagcaaaataACGTACTTTTCt
caccgccatcttgttttagaatgagaattatttttcgTGCCAGTTCACAT
GGaaatttttcatccaatcagatcgtgcgatttcgctttctctagtccaa
taagacagGATTTGATTCACGTGATATCTTTATTGAAAACCCGctcaaaa
taaaatagaaatataggggtcacactactggctacaggaactgaaagcca
atgtttttggtttttctgaaggacaaaaggtataggaatcTTTACTGAAA
GAGGCATAAGGCTGggactttttatttaaaagatacAGGCAAAAAAAGgc
atttttttggggggggggtgatgattaagattttacttagaaactttaat
tctgtTAGCCCCGTCCATGCCCCCTTGACATGAGCAAGGCATGTTGGCCa
cctctcctgaaaatttcagatcaaaacaaaaaatgaataaattcctgtaa
ctcaatgaaaattggaaaaagctgttttttgactgtttctgatcctaaag
tgctattttttggtagcATATGTTAtgtatttaagaaaaaatttctaaaa
tgcttttgttgttttataagtatttctttttgaataatGAAATTCAATCT
TATACTACACGTGTTCTTGTTGATAGTTTCCAGTTGCGAATCGATTACAC
ATGGATGCTTCTTAATATGGCGTCCATATAAGTGTAACGAGATATAGTAC
TGTCTCTCCTTTTAGATCTTTTTCGTGTCTAAAGGGCTAAATTTCATGAG
TAACATTTGCTTTATGATCATCGAAACTTTGCTGCTCAGACaataatttt
tacataattttttttcatgtatCTTTTCAACTTGCTTAAAAATAAGCAAT
ATAATATATGAGTTTTGACAAGGACTTCACTAGCATtactaatttaaaat
tttggttgGATAAGTTTCTAAGTTTCATCTTTCTAAGTGGAAGATTCAAT
TTGTCAACGTTTTATAAGGATgagaaaggtttttttttttaattggtcaa
ttatcaaaaatatttactgCCTTTTGAATGTGAAGCACACATTATAAACT
GTCACTTGAATTATTCTCAACATCTTTGACATGCCTTGTCTTGTTGATTT
AgtaagaaaatattcaaaatgttaTGCAACAGCCAACAATACATCTTCTA
AAGAGAAATATATAAATATTGTGTTATGAACGATTTCTGTATAATATATC
TAAGATGGCagataaaaaagcaaaaaggtcTTTCACGAATAAGGTTGATG
GTAAATCTATATTGCTCAAGGGAGTGATGGAGTGATCAGAGCCCCATCAC
CTATAACCAGGAGTTCCTGGTTTGATAACCAGGAGTTCCTGCTTTGAATC
CCTGCtccttcaaaatgtttttttcagttCATAAATAGCCAAGCCGGCTG
GCCATTAACCTTATGAAGAAAAATCTGAAGACTATCTTAAAGTCCTGTTT
ACTGGGCTGTTCGTACAATATTGACTATCTATCTTGAAATAatgatgttt
tattttttctttagacATGTGATCATTCCAAAAGAGCTGATTAAGAAACT
ACCAAAAGATCGTTACATGAAAGAGGAAGAATGGAGAGCTTTGGGAATCC
AGCAATCACCAGGATGGATACATTACATGGCCCACAAACCTGGTAAGAGG
GTGGTTTCTTTGCAAGAATTACCTTTTCCAAACTTGTCCCAAAATCTAga
cattttgcaaaagtttctCCCTTTTAAGTTAGGCTGATTTGGAGAAATTC
ACCATATGTACCTGACCTCAAAGAAAGTACTAAAATCGATTCATTTTTTT
AATGTGGAGCATGTCTTAGGTCTCATTTTGTTTTTgtctgggaaaggaaa
tttattAAACTTCATTGATGCATTGAAGATTGGAGTTTGGTTTGTGTTTA
GTATGAGGGGATCCTCTTCTCTTGGTTAGCTTTTACAATTAGAAGAATTA
GTGTTTATCATAATGAAAGAAGCCATTTATTCCTTTCTTTAATCTTACAG
AACCACACGTTTTGATGTTCAAGCGGCCAAAAAGTTAAACAACTGGACGT
TCTCTATCGATAAATGTGAGAAGTATTTCAATTTGTTATTGTGTTGGATG
AGATCAAACTCCAAGAAACGCTTTCTAACTTGGAAAGAAAGATTTTACAA
GAAGAATTATCAGGACATGGAAGGCTGAAAAGTGATATTGTTGATTGACT
ACCTAATCGATTAAAGTTAGtgatcatttttgttttggtgcATGGTTTTT
ATATATGATTAGAAAATCATTTATTTTGATTagctttttatttcaatttc
attttgtttcgaCAATTTTTCACACATTCGATCGCTATAACTCAATGAGA
ACGTTGCAAATATCTAGAGGAATTATATTTCACTCCACTAGTAGTTAGAC
CTATCCTTTGTGCTGCAATTAAAATAATGGATATCTCGACGATAAAGTCA
ACTTCCCCTATAATTACACGTAACCAATCATTCTTTCCTCGTCAAATTcg
attttaatttttacctAATTAtatctcaattaatttttctCTTACCGTAT
CTTATTCATAAATTTTATTTAGTANTCGATGAGAACGTTGCAAATATCTA
GGGGAATTACATTTCACTCCACTAGTAGTTAGACCTATCCTTTGTGCTGT
AATTAAAATAATGTATATCTTGACGATAAAGTTAACTTCCCCTATAATTA
CACGTAACCAATCATTCTTTCCTCGTTAAATTcgattttaatttttacct
AATTAtatctcaattaatttttctCTTACCGTATCttattcataaaattt
tatttggtaaaaaatgaagcattttGACCTTTATCGAAAAAAGTACTTTG
TATATAGATTTTATACAAACGCGGTTCACATTTTTGACTATGAACACGTT
TATAGCATTATTAAGAAGATTTTCTATGTAAATATTCTATCGTAAGTTTT
TTTCAACGGAAAAAGAAAATCGACTATAAAAATTACG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00012163TCONS_00012163Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000141supercontigsc0000141:188614..199400 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.75	3.43	1.12	0.84	165.22	107.33	54.68	53.5	34.54	31.49	31.65	22.89	13.77	14	18	21	32.04	26.65	4.1	4.97	12.94	11.17	24.73	20.82	24.03	32.16	13.38	7.31	13.57	14.15