XLOC_006001 (gene) - C. hemisphaerica

Overview
NameXLOC_006001
Unique NameXLOC_006001
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000109:219026..229495+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_006001 ID=XLOC_006001|Name=XLOC_006001|organism=Clytia hemisphaerica|type=gene|length=10470bp|location=Sequence derived from alignment at sc0000109:219026..229495+ (Clytia hemisphaerica)
ATTGTGAATTTTACTATGAAGCAATATCAATTTTTCCTAGTTTCGACCAC
CTGCCTAAAATTAAGGAAGGCCCAGGCACCATATAAAAAGCTGTGAAATT
CGAATAGAGGACTATGGATGATTAAGTGAGAGAATTTACAGGCTGAGTGC
GAGGACGGAAATTATTTGTTGAAAGAATTCAAATTAAAGTTGACAATATG
TGAGTAATTATATTATAGTTGACCCATTGGGGGACCTGAAGGagagttta
aatttttttgactgagaGTCTTCATTTCCCTACGCgttctttctttataa
gaacatccaaaggtttagaggccttcggatgttcttcactttttgagttt
taagcctaaaaatgttcttaacatgttcttatttgtgtccattttcctaa
gaattcggggttttagagtctgcaaagctttaaaatgttcttaacttgtt
cttaatattttggccattgaagccttatatagtttgttctcataaaaaac
gtgtatactcttttctttttataagaaccagtaaaattttggcTGGAGCa
tgattgttcttattttttgtcactttGAGACTTAAATctttatcctgttc
ttatttatatatAGGGTGTAATTGATGTGTTTTAGGCTctttacccaatt
tttactactttgacccctaaattgtttgaaattgagtaatttcaggcttt
ttaaattgttcttatttttttgcgattttgagcctaattgttcttatgaa
attgttcttataaaactaaAAAGTGTAGCACAAAACGTTCATTCAATGTT
CTATACATGGACGCCGTATGCACATTTATTGCTCGTTTAATTGTGTCTGC
TGGACTTTCAATAGGTTGGtcgcactttttataagaacaaactatatgag
accataaggcttcgagggtcaaaatgctaagaacatgttaagaacatttt
aaggcttcgtggactcTGAAACACCCAATGTCTTGGAAATCGAACAGAAG
CACtcataaaataagaacatttttctcaaGTCTCAAAAAgttatataaaa
aacatgtaagggTGTGATGAAACGTGGAAGAGATTGCATTTTGGACAGGA
TATAATCTAGATCTAATCACagcaaatattttatcattcatcaataataa
gcagatacgcattttctttttacaagaacaaactatataagaacataaag
cttcgatagccaaaatctagagaacaagttaagaacattttaaggctttg
cgggatctaaaacacccgatttcttaagaaaatgaacagaaatactcaaa
aaattgtGAAGTAagaagcttaaaactcaaaaaattaaaaacattcgaag
gcttcttGGATGTTCTTATCTTGCTTTgaatcataaaatttgttcataaa
atcgacaatagaccttttttaataaatttcttgGACAAACAACAAGAGcg
acaaaaaatcaaacttcgaaagcaaaatttgaaaaaactaattcTACCGT
GATATATCAGGAATTACTCAATGGGCGTTTTTACCtgcaggtatataata
aaaacGAATATTACCCTGTTTCACTCAGGACTATTATTTTTCCCCCGGGG
TCAAAATGAGGGCTTAGTCATTTTgaagcaaaacaaaatattatacTCCC
AACTGCCGAAACTAATGtctaattcttaattttttaggtGGATTGAAGCA
ACAATACAGCTATTATTCCTTgctctgctgacgtcagcaaaacgttACTG
GGATGCTGAACTGGATAAGCAGCTCGAATATCTTGAATTAGGTGAGTGGA
GCATTCCTGTACTTGATTTCAAAAGGGAAGGGGTCAAAAATATATAGTTA
TCAAGTAGCTGGTTACTTAGTTCTTTTTcgagggaagaaattttttattt
tcacactCTACCTTATCTGTAAACAGAACCAATATCGATATCAATATCAA
TACgcttataagaatatcttctttAAGAACATCAGGGTGCAAATTGGCCA
AATCAtgagaataccctaagaataccctctagggtaaGTTTCACAGAact
tgataagaatacagtcattttgtagttggttaacagaaaaaaattgcTTC
TTTTGTTAGActtaaattgaaactttgagacaaaaatgtaattttagctc
CCAGTGTGCACCCAAAATTCTCCAACTCTCAAATTGACCGTTTGTCATGT
TTGTTTAAAAGTCAAGTctcaaaaagtaagaatacatTAAGAATATTCCA
CCCTCAATTTTATCACtggtaatttcttaagaatacttgatcctcatcca
aagtaccacttttcttattaaaaagacGTGTACATTGCCGTAGTACTACG
CTACTTTATACGCGAGATGCCGTCTGGAATATAGGGGTCAGTTGAAAACG
TTGGGTACCCAATTTGGCACCAAAATTTGGCTACCTATCTGGGTGCTAGA
AAAATGGCGAATCAGCGcggaaaatattttaatttccaCACATGGGGGAA
TTTTACATTGTGAAATCcagaaaatatcaataaatatACTGTAAGTACCA
GTggtaccccttaaaacctacaacaaaaaaAGGTACCCCCTATATCATGA
TAGAGAAAACAGTAAGAGCTGAAACTTTTTTCTGGTGAGTCTAGGCTACC
TATGAATTTCTTCCTGGATAtggttttttgtaaaagctgctaagaaaatt
ctttttgcttcgtgaaaaaatgcaattttagttatttaccccttaaaacc
tacaaaatgtttttcttgaataactttttataaaatagccCTTTTGGTCT
CataattttgaacagtgattcactgcaaagttactaATACTAAAAATAGA
Gcattggtacctaaatattttcaaaactgtacgttaaaatcaaattacac
cttaaaaACCTACACTATGTACACCTTAAAACCCCCTTAATGCAATTTCg
ccttttttttgtcaaaaaacggctttgaagggttaaaacttttattcact
tcatttttttcaCGTATGctactaatgtttttctaaatctccatcaaatt
tgtgacattttggtatgtaATATGACcttgttttgagaaagtcgaaTTTT
CAGACTTGATTGGCCACTACcataaatgagctttaaaatagaactttgag
ggACTTAGGATTTCTTTGGGGTGTAACCATGGAGAAGAAAGTGATTTTTT
Cgtacctaccataagtataggtacctaaaaagtatataggttttatgacc
ttaaattcatttgtgtaatctctaggtctaaaaaacttgattttttgaag
ggatttcttgtaaaattttcagtaactttgaattttacgacacttacgat
aattaaaattcttgaaattaggtAATTTATGAAATTACCTATATTAGAGA
TTGTAGAAAAGTGAATTATGCAATATTAAATGAAGTTTGGAGGTTAAGAG
AGCCCCCAAAACTCAACTTTGTAGGTTGTAAGGGGTATGTGGATTCAAGG
GGTTATCCACTGGTACCAAAATTGACTTAATATAAAGGAGTTCTTAAAAT
TAAAGGGGGATCCCCCCTGTTTGCCCTGGGTTGACTCAGACTCCGTGATG
CTTTGCGGCTTTGAAAAGTAACAGACCAGAACACTGATCCCTAACTACTG
TGCAAAGAAATATGATACTGTGATTAATAATCAAAATTGTAAGAGTAAAT
AACTTGCAGTCAATTAGGCTGAAAAAGTGCTTTTTGCTACTCTAAGTGTT
GATTGGGAGggcaaatattttcatttaacTTTCCCAATTGTTGAAAAAGC
TGTATAAAATgaagtctgtaaaatattttcaaggtcGAAACAATCTCTCT
CGAAAAATTTCTATAACGACTGTGGCAATAAATGGTTGACCTGAGTCTGA
CGAAGAATGTCAAGTTTTAGTATTTTTCAATATCTTCTTCTGTTTTATAT
TggtgaaaaatattattatatagatTTAGATCGCATTCCTCTCTATCTCA
CCTCAGGATCTGTTAATGCACGCTCACCTTGACTTTGTTTTCCTCTAACG
ATTTAGCAGCTTAAAATCAGGCTGTGACAACGATTTTTCGGCTTTCTATT
CCGGTCTGCAAATTATTTTAGGTACCCAAATAAGAAGCCAAATTGGGTAC
CCAACCTTTTCAACTGACCCGGAATATAGTATACCCCCTATCTTGCAAAA
TTACTCAGAAGCTGTTTCGAATTGTAATTTCGAATTGGACTTTATCTAAT
AATGACGGTTGACtcttgctaattcgaactcgaacgcaCGGGGAAtcttt
ttcgttcgaattacagagagattcgaataataaaaaatattctaagaGGG
NTttcgttcgaattacagagagattcgaataataaaaaatattttaagag
gCTTTCTCCTTGACAgggactggaaacaagttcgaaatatgcaaagattc
gaataaccagtttgagtaaagaaaacgatttaagttaatttcatactcaa
agtttcatgccaaactttaagattcaaataatagacGTTCAAATAAACGA
GAATTTATTGTATTTGCTTTTTTTCAGCTGATTGTCCATATCAAGTTGAA
GCGATCGGATGTTACAAAGATGATTTGAATCGTGCCCTTCCAAGTGAGGT
AAAATATACTAAAATTCGTTAGTCTGAACTTTCGCACGTAGACAAAAATT
GATGAGCAAGTTTGTTTTGGTATAGGATTAGTAAAGACTCGGTGAAATAA
AAGACACCTTCTTCttacagacccgctgggatTTTTCtaaccagtgggga
taaaaataacgaaatGAATCTCGACGGGGATTGATATTCTGATACTTTaa
atggctggggatttaagtttcttttgttttcaagtcaggaaAACTTTCAA
CAGGgtcgatattttggccaatttttccaatgggaaggggtcccagtgga
tctgtgagaaggggatgtataAGTTCTTTAACCTGTAAAGAAGATCAGGG
TACCATTTTTATGGGATCCATATAACCGAAATGCGGTTGAGATTTCAAGA
TGACTCTATTTTCAATTCTTAAATCGGAAAGCATTTCACTCAAAAGCAAC
CACTGCGAGAGGAGACTTTGGGATTCCAACTTTGGCAGTTTACAACTTAC
TAGGACTCTCGTAAATTTGATTGAAGTGGAAAATAAGAATTGGAGTAAAA
GAGAATAAACTCAAAATAAGTGAACAAATGTTTCCAAAAAAATCCgttga
tgaaatatttttcccttTCCATAAGTCCTGAACAAGTTAATTgagaaaaa
acttaattttctttCTGATATGGATTGTAGATCTTGAACAGTCGTGACCG
AACCCGAAGATCGATTTTTATGGAACCACAAATCCAATGGACAAATTATA
ATCATTGGTTGGCAAACTTCATTTGTCAGTAAGTAGTATATTCGCTTCTT
TATTTATTCGTCATGTTGTATGTTGTATTTGATTAAATAAATCTCTAGTC
TGTACCAAACTCTGCTTCGCTGACTATTAAAAACGCCCGTGGGCGGGATG
ATACAGGCTATTGAAATCTCGGTTTTTGGTACGGTGCTCGCTATCCATCT
AGCGTCTATTTTAAGGCATCACTAGCTTTGGAAAAGGTTTTAAACGGCTT
TACTTTATTGGTTATGCTGTTATCGTAAGGTTTTTTGGCTATAAAAGTTT
TAATGGGAATAGCTCTATATTTTGTACTGCTTACATCACATTACTACGAA
ATATGTACACATTTTATATTTgtcacccgggggggggggNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG
TCGgattttttatagcaattttgaaatacaggcggcaacgaagctcgctt
caaagagacaataaaagatagatgtccagtcgtttatatgttcatgccaC
TATGTACTTATATTATAGGGGCGCaaggaaactttttgaaaagaagcCAA
ATACATTTGCTGACTACATTGGCGTTCAATTTTACGGTAAGTTGATATAG
cgactttcaaattttcataaattattctTCAGAAGAATTAAACCTTACGT
ATTAAGATTACTAAAGAAATGGCTTTTAAGTGTCTTACAGCCCCGGCCGA
ACTATTTTcctcaatggggatgaaaattccTTTTGAAATCTCCATGGAGT
AGaaattgttccaaggttaaaaaacccagtggggatagttttggagcgca
aattttaaacattgaatttcgagtggagataaaatcaaagtcaatttccc
agtgaggctgaaattccagggtaaaTTTTTCAGttggtctgtgacacagg
ggtgtgctTTGAGTCAAGTGGCATTTCATAGTAAATATATGTGTGTTTTT
TTGCCCTACCTTCAtataaaatttcagaaaaaattacaatatgCCACTAT
TATGAATAACCAAAAGTAGGTCCAATAAGTCAACTTAACAATTTCAAATA
ACAAAGAAATTTGAAGTTTGGGCAAAAAATAGCACGACCCCCGTCGATTT
TACCCCCTTCTTTACCCAAATTTTTTACTCTAATAATGGCGGCGATTATT
AGGTTTGCGAAATAAGGAGGGGTCTCGCCCATTTTTGAAACTCGGAAATT
TCAGAGACAAAAATAgagaaattttgtgaattttgggGCCTATTATCGAG
ACTTTTCTCCTAAAATTTAGCGTTTTTAGAGATAAATACTATGAGCGCCA
CATAACAGTACCCTCCTTTTGCATAaataccccccccccatttataGGTG
CAACAGGCTCAATAATGtaatttgtgtttttctaaACACAGGTGAAATTT
GGGCCAATCTTGATGAAGAGGTACGAACGAAATACAATAAATATGGCTCC
TCATTGAACTGTGTGAATGGAAATTACAAGAAAGTGCTTTCACATAAGCC
AACACAATGTGGATTATTCGTTGGAGATGAACTCGCTAATTATGTATACA
AAGTTACCAGGTAAGTCGCTATAGTACATTAAGTAAGTGAGTATATAtcc
atctggtggctgtcggtaGTGCCAAGAGTGTAACCCCTATTCTATTTTCT
GAGAGGTAGAGCGTCACACCTACTCTCAACTCCCAGTAATTACCACCAGG
AGCAGTCTACCCAATATAGGCTACTCTTGCGcagagttggcggtgaccgg
ggataGAACAGAACCTACAACCCTTAGATTTTAAAAGGTGAATGCTCTAT
CGACTGGCATGAGCTACCCAGACAGCACCTTAATATATCGATGGAAAAAT
TATCGGCCTTCTATACGGGCTTGTTATCTTAACACTGCAACCTCTTCAGG
CCGGAAAAAAGAtcgaaaatattttgacaataCTAGGTGACGAAAGAACT
CTCTTACTGTGAAGACATAAATTGTGTGTTATTATCTTAACTGGACGGAT
TTCCGTCTATACAGACGGGTAAGTTGCAacactgcaaaaaaaatgagtaa
aggAAACATACCAACTTGAAGACCTGTAGCACCTTAATTTTCATTAACAG
TGTATCTTCCTGTCGTCTCTTAGATATAACAAGGACGAAGATTCAAAAAC
GTGTCCATACTTCGAATCGAGCGGATGCTGGGCGGACAACGATCCATACT
TGAAGCCACACCAACGCCCTATGACAGTCtataaaatgaatgaaagagAT
CCTTATATTAATAACTGGAACAAGAAATTGATTGATTGGGGAAACTGGGG
TAAAGGCTACTTGGGAGATTTGTTGTGCCGATGTGCAGAGCTagccaaaa
aagaaaacatgaaatACTTCTCCATCCAATTTTACGGTAAGACAATAATT
AACATTCATATTTCGTTGTAAATTCATTACTAGTCCCCTAAAAAACCGTA
TTCTATCATGGCAGGGCAATATTGggcttacccccttggaatggaaatgg
acctcctcaagaggtttttttctggaaaagcccattagattttgaagatt
tctcaGATATTGCAGGGTTACtttaaaatgcaatattttagaTGGGAACA
GCCCTTGAGCTGCCAAGATACTTTTCTATGAACCGAACGGACCACAGATT
TTTGAGGGGTTCATTTCAAAGGTGGGGAACTGAAAATCTCAAACGTTTCT
ATTGCAAATTGCAAAGATTCTAGAGCGAAACCATTCTACAGATTCTTATT
ATGGCGGATTCTAATTTAACTTTCCGAATATCAATAATTTGTGGCCTGTT
CAGTTAATAGAAAACTATCATGACAGATCAAGGGATGTTCCCATCTAACA
TATTACATTTAAAAGTAACCCAACATGTGAGAAATCTTCGAAATTTAATA
TTGCTCTGCCATGATAGCCAGCGCCGCGGTCGGCTTTCTTTAGGGGACTA
GTAGTAGTTTTTACtgtctttttaggagattttataagtgtaattctact
tttatttttatttttgccgaccgaccgactctttttttgggtagcttggc
tcgtaaaacaacaaattaaattggcctcgcctaagaatcttttttttttc
tcaggtGAATGTTGGTTAGGGAATAACGAAACGAATTTTAAACGTGATGA
AAAAACCGACCGATGCGTTGATAACAAATTTGATGTTTGTGATGTCgatc
aaaaaacaaaatgtcGTGCTCAATTATGTGCTGGAAAGTGGAAAGCCAAC
AAAGTCTACGAATTGAAACAAGGTATAGACCCTTTTTTATGAGaactatt
ttataagaacaatgaggctcaaaatctccAAAGAATAATAACAATATAAA
AGAGAACTGCAACGCTTGGAATTACTCAATTCATTTAAATTTtgtctctt
taagggtcggttttcggtcCGATCCGTGTATTCTCAACATTCTCCAACCG
TAATACACCCCCGGAGGAGTACCCTGAACTATCAGATTATAACACAACTA
TTTTCCATGTTTCAGGACCACACAAGTGCGCAACATCACCATGTAAGAAC
GAAGGAAAATGTTTGACCATTGGTACAAACGATTATGTTTGCCAATGCAA
GAAAGGTTTCAGTGGTGATCAATGTGAGAAAGGATCCCCTGCTGTCAACC
CTACAGATGAAATAGAACTAAGCTAGAAAATTGCAACTTGTTGCTTTCCC
AGCTGCcatcgttttttataagattctCATTCCCGCATTATGATTCCACT
ACCACTCTTTTATCGGAAAAAGACCAGCGCTCCGGTAGTAGCGCacaatt
tgtgtaggagagcagatttttcaTGACACTGTAGTTATCCATGCATAATA
TGAAaggataattactgtgtcataaaaaatcTACTCTCTCCTACACAGAT
TTTGCGCCCCcccccttgtctacgctactgctcCGGGTAGTTGAAAatga
gcttcggaaagttaAGCAATTTcgtgagtaaacacaagatttttcgtacc
tttagaaacaaaTCCTTTCCTTCTCATACCGGTTATcccgggaaaaatag
cggaaagattccggaaaagtcAGGGAAATCTTATTGCAGGAATGagaatc
ttatgcaaaacgacgTTAGCACACAACGTCATAACAGCGTTCATATAACA
TTAGatgatgaacgttgaaacaacgttgtgtgccaactgggtgGATAGAA
GAATAAAAAAACCGAATTCACTCGATCAAAAGTATTGTACGTTCGGCTTA
AAATtagacaaaattatttttttcttgtaaaattttAGTCAATAACTTCT
TCGTattgtttttaagttttctttcCATCACAAAGTCAAAATAATTAAAG
TTCCTCTCACTAAAGCACAACTTTAATCATGTCGACTATAGCACTGTATT
TTCGCATGAACCGCTACTTATTTTGAAGAATAGTTATGAATATTTTATTT
agagaatttttcatttaaag
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00010698TCONS_00010698Clytia hemisphaericatranscript
TCONS_00010699TCONS_00010699Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00010699-proteinTCONS_00010699-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000109supercontigsc0000109:219026..229495 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.23	0.08	0.25	0.24	0.05	0.12	41.84	55.2	72.92	113.04	29.2	40.65	4.49	3.2	0.13	0.18	0.41	0.23	14.2	22.76	0.89	1.36	7.04	9.83	12.79	13.28	2.23	1.2	0.39	0.29