XLOC_005362 (gene) - C. hemisphaerica

Overview
NameXLOC_005362
Unique NameXLOC_005362
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000097:578624..585849+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_005362 ID=XLOC_005362|Name=XLOC_005362|organism=Clytia hemisphaerica|type=gene|length=7226bp|location=Sequence derived from alignment at sc0000097:578624..585849+ (Clytia hemisphaerica)
CACTACTGATTGAAGGGTCTGAGAGTGTTTGCATGATTTTTACGATGGAT CGAAATGCAACTCCGCAAAAATAAAACGAAAATTATTTTCtacattaaaa ttttaataaatattatatatatttaaatgatatttttagtttttagattt tttgatatagcatatttttgaaaataacttttgataatttATCCTTTATT AACGCAAGTTTTTAcctttattttgttgtttcgtTGAAATATACATCTTA TGATAGACGGTGTTCTATACGAGTGGCAAAAGTTCTCCCGGCTATAAATT CTTATtgtattattttgaaatattgatgTGAGTATTTTTCGTTGTAGATA AAAATAAtacgaaacaaaaaaaacaagatgTCCTTCCAACACGTACCAGT TCACCATTCTGAATCCATGGAAGAAATCCTTGAAGATCCTTTTGATGACG AATTAGAATCCACCTTCCCGCCCCAACGTTATTGCGCCACCTACTATCCA CGCCCTCAACAGGGCGCCACAAAGCTGAGGCGTGAAAGTTCAATCGAGAG GTCAAGACTTTATCGCGAGCTGGTTGGTCACGAACCCTACCGCCCACCCG CACCGCGCGCTCAAAAGAACGCGAAGAATGATTTCCGAGTCCTGTTGAGT GTCAAGCATTACACACCAGAAGAAATCACTCTCAAAGTGGATGGTAAGAG CATATGGTTTCCTTTTCACTCTTCTTCTTGGacttatttttttgcttgaa attatttttgagacTGGGTAGCCTAATTTTTAATTGTCGAGTTTACttga cgttctctaattcgattttcaaaaggAATTGGTTTTTATCGAATACTTGA GAGTAAATATTGGGATGTCTCCTAAAACCACCttgaaaaaccttgaaaat aaacCCCATAAACTTGAAAATAAACCCCATAAACTTGAAAATAATCCCCA TAAACTTGAAAATAATCCCCATAAACTtgaaagtatgaatttcacaggta aaaacgtaaaaaccaaAAACTTAAGAAATACGCCAAACTTcattaaaaat cttgaaaacgtttaaaatcaaaatatagaaTAAATAGTGTCATTTATcgc acccccttctcacagccccactgggaacccttcccacttgaaaaattgtc caaaatatcgtccccgttgggaaattatcctccaatttttgtccccactg ataataatcaaataaaccaatcctcaatgcaaaatatcatattttttcca tccccactgaattttctgacttataaacaaaagaatccccagccataaaa gatattggaatatcaatcgccatcgagtttcagtctgtttattttatcct caaaagaatcctaccggatctgtgagaaggggatgttttatccgaatttt ttaaatatattaggCGGTAAGTtttaatttgatcaaaattatcGAGATTA TTTTATAGTAGAAAGTCGAATTTAGGAgcctatttttccaattcaataaa atcattaCCTTTTACTTTGACTAcaactaccgggtgcgccacaaaaaagt ttctctctttgaaactaattttctcgaaatctaaaaattttaaaagaacc atttctatttcattggaaagaagaaagatagacttaaattttgatggatc aTTAATTAAATTCTATTCagtaaatcaaaatttatgttcaattgaataga aaagttactttcgaaaagtgctgaaaaacgttaaaaatcgacctatcaaa tcaaacagaagcatcattacatgatacatcagttttttcgtttcagtcat taaaaatgataattaactgtctaaatgaccttttgttgtaaAAGGAAGCT TGAATTTCAATGACATGAAGAAagtttgataggtcgatttttaacgattt cgagcactttctgaaagtaacttttccattcaattgagcataacttttga tctaatgaatcgaatttaataagtGACCCATcataatttaagtttatctt tcttcttttcaatgaaatgggaatgattcttttaaaatctttagatttcg aaaaaaattagtttcaaagagagaaacttttttatggcgcacccggtatt tggCTACATGTTTTTaaattcaagcaaaaaaaatccgaaaacaggctcaa aGATGctcatagcgtcagccccccctgctggttggggggggggttacacc ctaaatgtttcccaaaaaaggagggggctggaagtacaccaaTTCTATGG GGAGACCTATGTACTTGGTGGAGCTAAAAACTCATCACTTaacgtggggg ctaaaataactcagcttaatagttggcttcaattactcaaattgaagctc atgaatctgaaaatttttcgaaagtgtgcaaaatattttatcttaaacct agaactgaacgcaatttacattgACAAACCCTTTTTTAcgggatcaattt tttgaaagtgtatagcgtcaaaagtcctgggggctaCCAAAAAATACATg aatctttggggggacttaaaactcaggggggacctaatttttgcctggga cctaaacccaggctgacgctatggaTGCTTAGGTCGCGCTTAAATTTGCT AAGATTTGAATTTTCAACTAAGTTACAGCAAACAAAACTGGGGAAAGAGG AAGGAAAAGACACAGATTTTTCTGTCATAACTGTCGAACAAATGAATCAA TAATCGAAAGCATTTCTTTCATCATCCTTCATTCCTCAGGGTTGGAATAC TTGACCAGAATGGGTGtcaggtatgtgcgagccatgcCATAAagtcgaaa gtctctcaaaggggtgcAAAAACGATAAATAAAGCAATCGATTCTCTAAA TGAGCCCAAAAATTACGAAATATCAAAAATCGACTCCCTCAAAGTGTCAT AAAATCgggtacatgttttttcttttataagcataacgtttataagcata tgcaggctcagtttttggtaccaaaacaatggctctattgtttgagaaca atagaatgctaagcataatgcgagtctgatgtaggggcagacacttgctt ataaaaaaaaatatgtataagggtcgtaaaaacgtcgaaattcagtctct taaagggtcgattttcgaactttggccCGTCACTTCGTAAACTTAGTACC TCCGGGGTTTTATAGAAATCTTTGCAATGGCTTCACAAAAAAGTGAGAAC AATTCAAATAACGCAAAATTACTACCTGGTATTACAAAGTAACttcttat atttttccaggCTCGACGTAATGCAAATTatagcatatgcttaaatttat cccatatctgagcctagatatgcttataagtgcaatgcatataaaaatta taaaaaaccctactcttctgtgcttaattatatggttgattacatttagc ttagatttgtaaaggacccgcttttttgtaatcgccctgatgtaaacaaa aatttctattggttgaaagaaaagtatcgtacgatattttgattggttaa caaaatatcgtacgaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNtattctcgggtgattttggattaat aacccctcgtttcattgaaaacacttcaaaatattttgaaatgttttcaa tgaacctcggggttattaatcccaaattaccctctaaaccatgttattac tagtactaattgtAGTGGGgtcaattttgcaatttttcgggaaaaaattA CCCCAATAGcacccccccattttatgaaatttcctgaaaaccttcatttt cctaggggtttttggCAAAATCACCCTAAAATCAATAATGACCTTCCCTC TATTTTATGGATCCCCTCCAAGAGTACCACCCCCCCCCTACTTATTCCAC TCCACCCCCTTTACAATTTAGCACAAAAGAGTAGCCTATTTTAGTTCTTG CCACGTTAAAACATCTtaaatttttggtatttttagtcCGTTTAGGCCGG GCTTGACATTGTTTCAAAATACCATTCAATGAAAGTAATGAAAGGTTTTT GCTTCTACAGGACAGAAGCTTTACGTCACAGGCAAGCATCACCAAGAACT GGAAAGTGGTTTCGATAAAAGTGAATTCCAACGTGTTTACGTTATCCCCG AACAAATCGATATGCGTACTTTGACGTCCACCATTACGTTAGACGGCGTA CTCATCATCAAAGCGATCGCAAAACAAGCAGATCAAAACATCGCGGTAAA TTCGGAGGAGTTTGCTGTATTGCCGGCAAACGAGGATGGTGATAAATTCA AAGTGACATTGGACGTTAGTGAGTATAAGCCAAGTGAGATATCCATTCAC GTTAACGAACGTTATCTCGTGGTGACGGCCGAACGTAAAGAGGAACGCGT CGACGAACACGGCGCTATTGCACATCATAAACGTTATGAAAGAAAATTCT CTTTAAGTGCTGAAGTCAATTCCGAATTTTTGTCATCGCGTTATCGGGAT GGTAAGATCACGATTGAAGCACCACGCAAAGAAGTCAACAACGAAATGAG AAAACTGGAAATCCAGGAGGAGAAGGAATGAGATTTTGTTCCAACGTTTG CATTTCTTTTCCTTGGACCCATACTCAGTCACGCTCAGTCATCAAATAAT CATTCAGCATATCCAATGACCTGAAAGTGAATATTCAAAAGTTTAACtgt ttatttatatatttatgcTTAAAATCATAGCTACATTAGCTAGTCTACAC AGGGGTTAAGGCTCTAGAGTAGGGGTTTTGCGCTGAAGACGAATAGCGTA CTCTAATAGATACGATAGCTATAATCCATGCCCAATAAAAACTATCGATA GTATTCGGTACTAAGacagaatgatttcaaagtttgaaattgCTGTCCTA CGTACGTAGTTTATTTGTTTAAAGACTCACTCTTTCGTTAAGTACAATCA GAGAGGAATGGNTCCACCCCACCCCCTTTACAATTTAGCACAAAAGAGTA GCCTATTTTAGTTCTTGCCACGTTAAAACATCTtaaatttttggtatttt tactCCGTTTAGGCCGGGCTTGACATTGTTTCAAAATACCATTCAATGAA AGTAATGAAAGGTTTTTGCTTCTACAGGACAGAAGCTTTACGTCACAGGC AAGCATCACCAAGAACTGGAAAGTGGTTTCGATAAAAGTGAATTCCAACG TGTTTACGTTATCCCCGAACAAATCGACATGCGTACGTTGACGTCCACCA TTACGTTAGACGGCGTACTCATCATCAAAGCGATCGCAAAACAAGCAGAT CAAAACAACGCGGTAAATTCGGAGGAGTTTGCTGTATTGCCGGCAAACGA GGATGGTGATAAATTCAAAGTGACATTGGACGTTAGTGAGTATAAGCCAA GTGAGATATCCATTCACGTTAACGAACGTTATCTCGTGGTGACGGCCGAA CGTAAAGAGGAACGCGTCGACGAACACGGCGCTATTGCACATCATAAACG TTATGAAAGAAAATTCTCTTTAAGTGCTGAAGTCAATTCCGAATTTTTGT CATCGCGTTATCGGGATGGTAAGATCACGATTGAAGCACCACGCAAAGAA GTCAACAACGAAATGAGAAAACTGGAAATCCAGGAGGAGAAGGAATGAGA TTTTGTTCCAACGTTTGCATTTCTTTTCCTTGGACCCATACTCAGTCACG CTCAGTCATCAAATAATCATTCAGCATATCCAATGACCTGAAAGTGAATA TTCAAAAGTTTAACtgtttatttatatatttatgcTTAAAATCATAGCTA CATTAGCTAGTCTACACAGGGGTTAAGGCTCTACAGTAGGGGTTTTGCGC TGAAGACGAATAGCGTACTCTAATAGATACGATAGCTATAATCCATGCCC AATAAAAACTATCGATAGTATTCGGTACTAAGacagaatgatttcaaagt ttgaaattgCTGTCCTACGTACGTAGTTTATTTGTTTAAAGACTCACTCT TTCGTTAAGTACAATCAGAGAGGAATggaaagagatggaaaaacagcttc ttgaaaacaatggaaaaacggctcgttatataccaggtctcttgccctta agggagtttatgtcgagtaaatagatttcttttgttgtcgctataaaaaa tctgcataattagcgtgttgtgacaaaattcttttgtttcaagcctgatt atgcgcaaactttcagggcttatattttgggtacacctctcttatacgaa aaggtacctatatcttcttgctcagaatttcctagcgattttactaatat aaccgcatcatgaccgcactataatatggaaagctagagctcgagaaaat tataacttcatcttgattatactcgacttctgacagttgacaattgaact agtaatcggcaaaaaaggaaaaacaaattttcatttttatcgtcaaatca tgtagaaaccgtccgatttgtatggcgagccgtgaCCTAATCagcgtttt tacaatagaattttcaataaaagtgATCGTTGAACACTGAGtgatcagaa aagctgtttttccatctctttacattcctctggtacAATTGTTAAATCAT caattgaaaagatttttgatttaatggattttgcctaaatacaaaatggg cttttccagaatagatttgaatatgggggtggataacattttttagaaat ttaccccctgtgacttttgacccccggacagagcGTACTATATCCTCCAg tccccatgtacggacattttctggaatagcccaatcgGCTCTGCGATGGT CTGTTAACACAGCTAACGAAATTAGTGACGTCCGTATTTGCCGCCCATCT TAGTGAAACTCCTTGTCATATCTTTATACTGCATTTGTAATACGAATTTT CAATATGCAttcattataaatatttttctattttaggggattttttaggg attttgtatttttgcacGTATTTATATGTTTTTCTAAAAGATTCAAATTA TTCTTTAAAAAGGTAGTGTATTCTTG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00009607TCONS_00009607Clytia hemisphaericatranscript
TCONS_00009608TCONS_00009608Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00009608-proteinTCONS_00009608-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000097supercontigsc0000097:578624..585849 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
36.29 35.01 37.9 33.87 22.3 16.19 21.73 21.6 12.41 17.86 11.18 8.09 20.01 19.96 11.16 11.7 18.37 14.06 13.69 17.36 12.99 12.66 14.65 13.87 8.13 10.88 7.64 5.09 8.67 7.91