XLOC_004151 (gene) - C. hemisphaerica

Overview
NameXLOC_004151
Unique NameXLOC_004151
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000076:614301..625145+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_004151 ID=XLOC_004151|Name=XLOC_004151|organism=Clytia hemisphaerica|type=gene|length=10845bp|location=Sequence derived from alignment at sc0000076:614301..625145+ (Clytia hemisphaerica)
taagcCGATAcgcaaaacataaaaaatatgttCATCTAGCGTTTTATGGA
CCTCATATGAACGTGAAATGGGCGTTATTCTGACATTATTATTTTGTCAT
AGATTGATGTGaaacaaaagtaaaaagatGATTGAAGAGCAATGCGTGAC
AGTACTATGTATTTGTTTTCTACTCTTCATCAGACCTCGAGATGTTTTAA
CAAAGGACTTGATCCTTCGTGGAGAAGATCGTGAGGCTTATTGGGAATTG
GCGTACGATCAAAAGGTTCTGGATAGGACACCAATAATTgaggtacatgt
tttttttataagaacaaactatataagaaaataaggcttcgatggtcaaa
atgttaagaacaagctatgaacattgtaaggctttgaggactctAGGATC
CCTTATCACCGATTCGATCTTCTGGAGTTACCTGTGTGTACCCCTAAACC
CTTATTGGGGAAGTTGTTGGCCCAGAACACAAGTCACAAAGACCAACAAC
TCTCACCATGGAAACAAACAAAACTCAAATTGACATCACATTgctaaaaa
agatatttgatgTCACAAAACAAAACTCTATAAAAATCCCTGCCGTAAAA
ACGCTTACCGCGCCCATTGGTTTATCCTTGGAAGAAACACAACATCAACT
AACATGATTAACAAACAACAATTTATACAAGCAActagatttttaagaaa
tatacaaaaacaataTACATAGACGGCTTCAGATCCTTTTAATCGTCCAA
TATATAGCTTGTAAAGGTATATGATGTCTTTAGGTTCAAACAGTAAATgt
aaagggctacttagactacacaattatattgacgaacaatattcaacagt
atggtttgcggaccgtaatgtacgaagaaAACAACTGGAGCTTACAATAT
ATTGCGAAcatattttcaatatattactggcactcagcaatatatcatca
atatattgcctgagaATATATTGtgtattgtgtagtgtatgtagccctta
aaaAGATGAAAGATGTTTTTGAAGGTTATTTGTCAGCTGGGCCCTGGTTT
TTCTTGCGATTGAGAGCTTGACAAAATTGGGGAACAATCCTTGAAACAGT
TGATTTATCAACTCCAATAACATCTCCCACAACTTGTTGGAAACTTCCAC
ATGccaaaaacttcaaagaaatcAACACTTGACTTTCCACAGACAAAGCG
TGGTTTCTTTGTGTAGGTCTTTGCAGATCTTGTCTGAGAAGATTGGTTAA
AAACACAATGCCTTGTCGTGAAAAACGAAAGCGCATCCGAATGTCCTCAT
CTGAAAAAGTGTTGTTATGCATAAAATCTTTCAGTCTGTATGTTCTTCGA
CGTCTTCTTTGGAAATTTCCATATAAAATCATGTTCATGGCGGCAATTTC
TCACTTTGTTTTAAGCTTAATCTTTCCTTAATCCACCTCCCGAGCAGGAT
TAAGTTTTGGGGTGTTTAAGTCTAAGTTAATCTCTTTTTTAATCGTGATA
TTTTTTGAACAACagacaaattttcgttaatcgGCGCTAATCGCTATTTA
ATCCGGACTTAAGCTAATCGGCcgctaatccacttttgaacaaccgggcc
ctggGTTTATCTAACTCTTTAGGTTAAAGTGAATGGCGATTTCGCGTGTT
TACAAGCCTGTCTACAAACACCTGAATGTCGGTCAGTCAATTATGAAGCC
AATTACAGCAGACAAAGATGTCAATTATTGAAATATAACCGATTGAACGC
GCCAGTTTATAAAGATGCCCCTAATCCATACTGGAAACATTTTGATACAG
GTATGATAGTATCCCAGCtggcaaacaacgttgttttaacgtccatctaa
cgttatatggacattgtgaacgttagataaacgtcgaaacaacgttgtgt
gtcagctgggatgcagattattttataaattaaaagaaagaaactttgat
ttattttttagaacTTTAAGTTTAATGCCGTCCGTATGGTCGACAATCAT
CAGCTAAAATCCAGGGTTTTTTTTGAACACAGATATCGTATTTCATCGAC
TTTCTACCTATCCAATAAGGTCAGCGAAAACCGTCTTTACTTTAAATCTA
AGGACCCGTCCCCGTCCTTAAAAAATAGGGATCCGTAGATGGCCGTCCGT
ATGGTCGACAATCATCAGCTAAAATCCAGGGTTTTTTTTGAACACAGATA
TCGTATTTCATCGACTTTCTACCTATCCAATAAGGTCAGCGAAAACCGTC
TTTACTTTAAATCTAAGGACCCGTCCCCGTCCTTAAAAAATAGGGATCCG
TAGATGGCTATCAGGTTTTGCTAAGATAGATAAAAAATCAATGGTCAGAT
AAATAAGATCATACATTTGGAATCAAAGAAGTAATACTCGggctgcaaaa
ttatatcaatgtagtcaaaacatgtgattaccttatcggggaaaacttcg
tcggggaaaagtgacgaaatttcggccaaagtgacgaatatttttccccg
acgaaaattttccccggtcTTAATGCGCTTACCAAagccagcaagtgacg
aatatttttctccgacgaaaaatttttcccgacgaagttttccccgataa
ggtactagaaaaagtagaaaaatatattttttttaagaaaatcgggctcc
gtcacatttcaggcattgccattatgcatcattgtgcaaaaaatcagaaa
aaaataatgagtcaacattgagaaaagctatattttcttatttggttaaa
gggaatttccccaaaatacgaaaatccgttttttaaggcgaataaaaatt
ttccggtaaaaaccacttcagccattgtttagagaatcttgccatccatc
tttgttcaaaaaatcagaaaaacctaatgacaggattttgcacaaagtcc
aaaaaccctatttttaggcagtttttggcccaaatttgcccaaatatatt
ttttttcgaaaatcgggctccgtcacattttgggcattaccatttccCAT
CATTGTGCCacaaatcaggaaaaactaatgagccaatctcgagaaaagtt
tgTAACGAACTAACGGACGAACTAACGGACGAActaacggacgaacagac
gaacagaggttaatttataggacctccaccggggtaggtccaataaatgt
catgtaacaagcacgtAAAAACCTCGAGTAAAAGCATGacttgtcttcag
actttaattttgcaacctgtctcaataaattcgaaccaataaaaaaataa
atgtcatgtaacaagcacataaaaacctcgagtaaaagcgtgacttgtct
tcagactttagaaTTTTGCAGCCTGTGTATTGCTTACGCGAATTGGATGT
TTGCTTCCATATTGGTGGAATATATCTTAGTCAAAACTGAAAACCACCTC
TATTgtctcttccagaaaatgtccgtacatgggggtggaggactTATTGT
CCGgagggtagcgaaaaatcatcatttGCCTTGTTCGGGGgataaatttg
ctctgtccggagGTAGGTAATTTGGCTTGTCCGgagggccaaaagtcact
ttgtccgggggtaaatcactggCAAGcggttatatcctccaccccccata
ttcaatttttttctggaaaaccaCCTCTATTGTCTCTTCCAGGGCTTTCA
CAATTCGTCAGAATTAAAATGCATCGTGACAATGCGTGTTACGTCACCAC
GTGCAGTGGGAATAAGGAAGCTGTCCTTTCAGAAAAAGATCAATCGAAAT
GTCAGGTAGGATAGGAGATaatctttataaaaatttacataAGAAAATAC
TTGGAAGCCTTTGAAACTCGAACaatcttcaaattataaaaattctaTTA
TAAAATATTATTCTAACTCGTTTGGTTGAACGtataattcaaaaaaatct
tctttttagGAATTTACAGATGAAAATACGTTTGAATATGACATGGTGTC
AGGCACAATCAAAAGTCACTGCACTGATAACTACCTATGCCCACAATACC
CTCACACCAAATGGATGACCGTGATGAGTGGTGATCACCCGTGCAAATAC
GATGACAAATACAAATTTCGCCGTGCCTTTTGTAAGTGTAAATCACTGAT
CTCAAACTTATTGATTGCCTAGCGACCGTAGCATAAAGGTAAAACATCAA
gatacggtgcgcaaggttgtgggttcgatcccggCAGGGTAGGTTGGGTA
GGGTAGGtggtacttgatacctctctgTTTGATGCTTAGCAACTAAAGAG
GAGGATCAAGAGTAAGtagagaaatccagggaaaggattGACACCCTTCC
caaccttcgggtagacagctataaagaaaaagaagccttcgggtcgcctt
cGACAGCAGTCGCAAACTTACTACTACTCTTAAGGTTCCGAATAAACGTC
CCCATCGGGTCATTAATTtttgcggtcgcaaacttacttaatTTACCCAT
ATCGGGCTTCCCATAATGGAAAAGAGGTACCCACATCCGAAACGGTTGAT
TTGTTTTTCATTAGAAGTTTGTTAAGAAACGCCGCTGCTGTCATTTAAAG
ATATAAGAACTGCAGTGGCTACTTTTCAGGTACCCTTTTTTCAAAAGacg
caattcatgatatgcactactgcaatgacttcacggaattatgcaacttt
tctgtttttgttccaaccAATACgtcattttttctattgtttaagtgacg
tactggttggaaaattttaagagttctcagaagactctccagtggtgcat
atcatgaattgagaaaatgcctctagggcactgacctttatataaccctg
gaccaaacaatatctgccatctttgattggagtttttttagaattggtac
ccaaggagaagccattgcaatgttaaaaattaNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNagtgccgaca
ttagggtaccaattttcaaaaaactccgatcaaagattttgcttggctgg
gattgagaagctttgtccagggtatataaaggtcagtgctctAGGGTGCA
TATGAAGCTCAGTTGAAGCGACAAAGAATCATCCAACCTAAACATAAGAA
ctaattaacaaaataaaacaccCCTATCTTAACAATAGTTTCTACGCGTA
ATCTTTAATCTATATTACTTCGACCATTTAATTAGATGGAGCGATCATGT
GGGGTGAATGGTGTTTATTCCCTGAAAATTATGGAGTTTCCATCTCTGGC
CAATTATTACAAATTGGCTTGTGTACAGAAGCTGCAAGCAGAATCACTTT
CGAACACCAAGGTAAAACACATCATCACACTTATTTCTactatatgtgta
gatatgtaaacaTCCGTAAATCTACTATTCCTATATCGGCCagtatcggc
caaaacttattCGGCCTTAACTTTAGTCGGCTTTAACTTTAGTCggtcct
aattttagtcacttCGTCAagatttagtcactaagggccgactaatataT
AATGAATAATAGCGGACAAAATAATGAATTGTAGCGGACTTAATGATGTG
GTATTTAAAAGAGTTGTTTcaggaaagcttaattataaacttttaaattg
GCCNGATGTGGTATTTAAAAATGTTGGTTCAGGAAAGCTTAATTGTAAAC
TTTTAAAttggctcaaatttttagtcggcccaaaatttagtcggccctaa
tttttagtcggccctaattttagtcaccgagccaaaatttagtcacttag
ggccgactaagttttggccgataaggtatattggTAGTTACGGTAAATAC
TATAGTTGAAGAGATTGTGAACTGTATGATAATAATTACATTCTATATTA
TTTTAACAAAACTGCAAAattttcattacctaactcgagatatttcatgc
gcaagttccacttttcgccacattttggtctaaaattgaccaaaaattgc
atcttctgcgtgaattatctcgagttaggtaatgaaatcggctatacccg
tctcaaagtcttctatatagttttatgagagctttcgaatggtatacatg
atgttgtctcaaaaagagtttgaaattttcaaaaacttttgaccttaggg
ttttgcctggggaaaaaagaaattgcccaaaaaagggatgttccaccagt
gggattttaggggattttttcctgaggcataagcatcctatagagaaggt
ctggagaaagtttcagctatatattattttttttcctacaaacagcctgt
acttttgtaacacgaccacactaaaaCTTTCCTCGTAAATCTCTTCTTTT
CTAGCAAAACCTCCTGTCAAAGTGTCTTTCTACAAAACTTCTACGAATAG
TCGGTCTAGCCTGGACGCTGCCATTCAAAATACCGCAAAATACCCGAACA
CACCTGACTGGATTGGCTATGGTGATACTTTTGTATTCAATGATTGGAAC
GATTACTATATGCTTCGATTACAGGCTAATTTTTTAGCCCCGGAGAATGG
GGAATACAAATTTTACGTGTCGTGTGATAGTTATGCTAAACTCTACTTGA
GCACAGGCAAAGACGAAGGGAACAAACAGGAGATAGCTCATTGTTTATCA
TGGGTTTCTGGATGGGACTGGAGCATGTAGGTAGACTGAGAGTAGATCAT
NAAcacccaaaaaataaggatcttacatttcataaaaaaccttATTTAAA
ACGTTAATGCAGATGTGCACGGGGCTTTATAAAGCCCGGTTCCTATGAAA
ATGTCTCCTTTGTTCCGCTTGAGCTTCTCTTCGTAGAGAAGAAGTTTTAC
GTCCGGAGCGCAGGAGATATGACCGTAGCTTAGGATAAACCAGACAAAGA
TtcgaatttttgaatgttttatttTCGAATTCGATCAGCTTGTCCTATCT
GTCACCTTGAAACTTTGGGGTAGGCTGGACTCTATAAAAATGGTCGAATT
gtcggctgaaattttgcacgctTTTtattgttccttgggtgaatccctgg
ggttctttttattcaatgatttatcatagcccaaagggctagatttgcag
caaaaaaaatgaagtatgATTTTGTGACTTGATTAAATTTCGAGgtgatg
gataggatctagcattttcattgttctcGGAGTGCGAGATCAAgaatgag
cttcactttttgatctAGGCCGCAGATCTAGCCCTTccggctttacagat
atctgtggtttttttcattttttcaaagttttgatttctttgggcgtggt
cacaagttttagcatcaaaacgaggctaaactttggggcagactagaaac
ttctaaaattgtctgattaggctgaaattttgcaatcaaaacaaaataca
aaaatagtgaTCGACCTCATACACATTCTATTCCATTTTGCCGAATTTTT
TACTTCTAGTCCTTAGaattttatgggaaaaacaGCGGGACCGGTNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaacgaacgaacgaac
gaacgaacgaacgaacgaacgaacgaacgaacgaacgaacgaacgaacga
acgaacgaacgaacgaacgaacgaacgaacgaatattatcttcatatttt
ttcattatagTGCGTATGTGTCTCAAGCTGTTACACTAACTGCCGAACAT
CTTTATTATATGGAGGTGGTATTTTACGAGGATGGAGGAGGTGATCGTTT
ACAAGTTGGCATGAAATTGCCTGGGTCCTCAACAATTCAAATGGTTGAAG
CATATCATTTACAATTGATCGCATCAGAAATGGAAGCATAATTTTTTTCG
CATTATTtttgagtttcttcaatctttatttaTAACTCACGCAAATTGCA
AGATACAAATcctcaaaagttaccttatcggccaaaacttagtcggccct
aagtgactaaattttggcttggtgactaaaaatAGGGCCGActtaaaatt
tgggccgactaaaaatttagaaatggccaaaacttagttattagtcggcc
cttagtgactaaattttgacgaggtgactaaaattagggccgactaagtt
ttggtcgATAAGGTATTCGATATTGGATCGATAAAAGGGGAAAATAAGGT
GGTTAAAgatgacaattgaataaaaagattATGTTGGAAAGCTATATAGA
ATAGAAGCTATAAGAATGCTATATTATAAATGTATTAAGATTTGCagttt
tatttctgatttaagAGAATAGCAACTTTGTAGATTTgtcgaaaaaccgc
gaaaatttctttccgcAAAGTAGTAACGACGGAAATCCGACCAAGATTTC
TGTCCCACCCGACAAAATATGATTGATCGTATGAGACATCAATTTTTccg
aatttttttataattaatttcaaatttcgaaTTTGGCTCTTATATGGAAT
GTACTTTCTTGTACGATGagctattttttcttatttggcgccccttcaaa
tagagcaattaatcgttaattgcatcctgtagagagaaATTAAttgttaa
tcacactcttcgatgcgcgccaatgtttacaaaattgattttagtttttt
cttacaatttttttccatcgaacgttttaattgcattcgaaattcatttt
tgtgagtaaaaaaaatctataaataacagtaaaagaaaaacatagagGAA
AGAGAAAAATACAGTTGAATTCATGTAATTCGAAATCTCAAGGGACCGAg
tattttgttcgaattacatgagtttcgAACTAGATGAGTTTTCGTATTTT
TGACCTAATGCGATGAGAAAAGTCTTTCCCAGGTTTACTTTTACGTCTTT
ATTGGACATACTATCCTCCAAATCACGGAGAgcttcatatttcgttttta
aagtgacttctttatgttttctttttcccaTCTTGTCTTGATAAGTAATG
GAAGTCAAAATTAGTATAGACGAGCTTGCTAATCGaatgtgaaaaagaaa
acattcgattggCAAACAACGTCAAAAACGTTCGATTGACAAAATATCGA
GTTTGTCAgcttcaaaaactcaaaaaattcgaaaattcgaaTTATTCGAA
TTACATTTCTTGATGGGACCGGAAAATCTGTTCGATTTATatgatttttc
gaattacatgggttcgaattataggagtTTTCTTGTAATGTTTTCAAGGT
AAATTCCGAGGGGACCACAGAATCTGTTCGAATTAGGCGAGTTTTCGAAT
TATAggagttcgaattacatgagttcaactgtaTAAAAATTGCAGTGTTA
TTTACTTTCCTAACGGGAAAAAAGTAGTGGaacccattgtgcgattagct
tgtaatcacataataactcgtacaattcgaaaattgcactcgtgattttt
ttgtttcaaattttcctcgtttttcagactcggaaaattaataacaaaaa
aatcgcGCGTGCAATTAttttcgaattgcactcgttatcatgtcaTTTTA
CATATACTTATTCTTATGATAACATTTTATTTACAGTATATATCaccaaa
ctttttattttcatccTGCACGgtatatattttatattattgtCTTTACA
CACACcggatatctacggctaatttcaaaattcattgccgtagagggtta
gttgtcattgtcttttctcatttgagatttttcaaacagaccgctgcgat
ggagagAGAGAagacgacgagagaagtgttgctatttataaatcatactc
catcccagaggtctccgtacgtgattttttttatcagaaagacaatgcgc
acagagtgtaatacgaaacgataaacgtgagatacactctggtacagagt
agggATATATTCGAATATACAGTAGACTCctgctaattcgaacttttatt
attcgaatttttctataattcgaactaatttttAAACACCGTTAAGAGCA
AAACGTAAACTAATCTCTAGAACTCAAATCCCTCTCTAATTTAAACAATT
TACATACTCcctatttgaatttgaattagtgAAAGGTGCCTGTAG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00007380TCONS_00007380Clytia hemisphaericatranscript
TCONS_00007381TCONS_00007381Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00007380-proteinTCONS_00007380-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000076supercontigsc0000076:614301..625145 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.32	0.37	0.71	0.94	1.02	0.74	0.84	1.17	0.61	0.64	0.54	0.71	0.31	0.46	0.47	0.44	1.36	1.74	0.63	0.71	5.47	5.44	1.57	2.61	2.75	4.65	2.58	2.54	0.72	0.73