XLOC_003867 (gene) - C. hemisphaerica

Overview
NameXLOC_003867
Unique NameXLOC_003867
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000072:702781..710006+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_003867 ID=XLOC_003867|Name=XLOC_003867|organism=Clytia hemisphaerica|type=gene|length=7226bp|location=Sequence derived from alignment at sc0000072:702781..710006+ (Clytia hemisphaerica)
CTGGCCTGCTGCGGCTGTTGCCAATATCAAGTCATACTGTAACAAAGTTA GTGCTTCTTTCTTGTTTAGAAAGgatagactaactttgagacaaTTCTTT GAAGGAAGTGTATAATATGAGGTAATATATTGGTATTCTTCTTGTCCGAA AAtcaatattctttaaaataaagGGAAAGTTAAACCCGTTAAAGTTAAGA TCACAAAAGTTGAGAAGGGGTCGTAAAAAAAGGTATAGCTAATTTTCAGC TAAGACAATTCTTTGTAGGAAGTGTATGATATAAGGTAAGatattggtat tttttttctctgaaaattaatattctttaaaatataGTTAAACCTAGTTT GAATCATATAGATTATATAGATATACATACTTTCTTGTTAAAGAGGATCT ACTGAGTATTGAGCAGCTtctataagaaactcttttcgctagaggatgag cagaagcctgaACTGAAGAGTTAGTTCATGcaatgtttccagctcaccca aataatgacttatacgcatgcgtaatttgccgTTCTTTTAGACCATATAT AGTTAATTTCCGTGATAAACAaaagaggaatgaatctgtaggggtggtac agtcacaatatgaaatttgtcgttctttaaaaatttgtcgttctttttga cgctttttaatagttatttgtcgttctttttagatggtctggaaGCGTAA GATGAACAGTTTCGTTAAtaacaaatttcaaattcaaaacagattataca cccctgtctcacagctccagtgaaactttttcccacagcggggataaaaa tgcAGTGGGGTGGTTTTAAATCcagttgggatggttttggattgcaattt tttacatcGGATCCTGAATTGGGATGAAATTCAAGTCAATTTCCAAATGG TGCTAagattgtagggtatttttcccacagGGGATAaaatctttgccaaa ttttcaattggggctggggtcccagcgggtctgtgacacaggggtgtaga TATTGAAGTTTATCAAAATcgtaaattgtaaaaattgtagaTATCCCATT TTAGAAATATACacattttatttataagcaactgcagttttaagtaaaga aactaagcatATTAAGaccatcgtaagaacatttgagtctgagtcaaaat ttacaagttcttacaaaaaaagcgggtaaaaacaatttaacaaaatGATC CCATAAAGCTTACAGAAAAATAAGCCTGTGAGATCACTAATGTAAAGCCT GTATCATCCTGTAACGANggaggatgagcagaagcctgaATTAGAGTTAT TTCATGcaatgtttccagctcacccaaataatgacttatacgcatgcgta atttgccgTTCTTTTAGACCATATACAGTTAATTTCCGTGATAAACAaaa gaggaatgaatctgtaggggtggtacagtcacaatatgaaatttgtcgtt ctttaaaaatttgtcgttctttttgacgctttttaatagttatttgtcgt tctttttagatggtctggaaGCGTAAGATGAACAGTTTCGTTAAtaacaa atttcaaattcaaaacagattatacacccctgtctcacagctccagtgaa actttttcccacagcggggataaaaatgcAGTGGGGTGGTTTTAAATCca gttgggatggttttggattgcaattttttacatcGGATCCTGAATTGGGA TGAAATTCAAGTCAATTTCCAAATGGTGCTAagattgtagggtatttttc ccacagGGGATAaaatctttgccaaattttcaattggggctggggtccca gcgggtctgtgacacaggggtgtagaTATTGAAGTTTATCAAAATcgtaa attgtaaaaattgtagaTATCCCATTTTAGAAATATACacattttattta taagcaactccagttttaagtaaagaaactaagcatATTAAGaccatcgt aagaacatttgagtctgagtcaaaatttacaagttcttacaaaaaaagcg tgtaaaaacaatttaacaaaatGATCCCATAAAGCTTACAGAAAAATAAG CCTGTGAGATCACTAATGTAAAGCCTGTATCATCCTGTAACGAGTTGTTT TAAATCATGTGTCGGTCAAGAAAACCGCAACAATTTCTTTACATTGAAAA TatagaaacatttttcaagGGATAATGTTTTAGTCCAGTCTAAACAAAAG TCTAACAAATTCAGACTAAAGATTTAGAACTTAAtagtaaagaaaatttt atttcaatttcacaaTATTTAACGCTTGGTTCCAGAATGGTAAGAAGGGA TCTTTGCGATTTTGTATTATTTTGaatacatcttttcgaccgtagtcgcg cggtcaggcgcgtgccactttattatttaatttaccaccctaaactcgat ccaatccttttttgacacattattctattgtctataggcgcgaaaaaagg actgggacggttttagtgggataaagcggacaacaAAATGGCCgcgcggc tacggtcgaaaaggtgtatttcttTAGGATTAGCAGACGTGGAAATATGA GTTCGAATCTTTACTTAGACTGCGCGCATCTCTGAAATTGagtttgatat aggggatgcgcaGTGTGTATAAACTTCCCGTGTCAAGAAGATAGATACAA ATTTGATAAGTATTACGACtctcctttgttttcgagtacatgtttttttt aagaaacaaacttttaagaaacatgaggctcagaatgcctaaaaactaag aaacatgaggctcagaatgcctaaaaactaagaaacatctaaaaaACATG CCGAgactgagaatgagaaaataacattttttaattagattttttaaaga acattcccatcaaaagaaatgttttttttcctttgcatgaaaaataggct gattatgtcaaaaagtttagaaacatgtaagaaacatgtaaggctcaaaa ggccaatttcttaagaaacattgaggctgcttagtaaaactagtttctta aaaaaaaacatgtaaagaCACACATAAAGTGTAACGATCACTCAGCCTAT TCGGTAAAATATACccctcaaaaacacaaagacgcGGGTAACACTCTGAG ACGGGATTTTTAGAggtcatttcacagtcgaaatggatcatgggtaatca agaATAATTGCGCCCCGCTAACGGTTtcccgttggctagacgcaaaaatc tttcaaaatttttcaaaacaacagaCAAATAGcacgcagtggtcctgatt acccataacgctttgcgactgtgaaatgggcTAAACACGATacacatccc ctatatcaaaacatatccgGGGGATACATGCCTCCtaatctttactttat tatcTATCTTTATAGGATTATTCCAATTAAGAAATCATGAAGTTCAGAGG ACtgtcgaaaaagaaaaaaacaccgtCTACAACTGCATCCAATGAAAAAC CGTCAAAAATTCCATTACCCAATCAAAAGACTCGAACAAAGGAAGAGTCA TCCAATGATAAAACAGAAACAAGAAGACCTGTCAATCAAAAGTCACGTGG TCAGCAACAGCAGCAACCGAcatcaaatgaaaaatcaaaatccaaTAAGT CTGATAGATCACAAAAGCATGATTCAAAAACcgaaaaacatggctcaaaa cCAGAATTGAGTGATGTAAAGTCGCGTTCAAAATACGCCCGCGCGTTCAA AATCGAAACCAAGAAGCGGACGTGCAACAATGAAGAGAAAATCCATGTTG AAAAACAGGCTATCAAATCAAAACCGGTTGTTGAGGAGAAAGAGGAATTT GTTGTGGATGAGAGTCCGTTCCATTTGAGTCATCTTCCACGCTTTGATCG TTCGCGCGCGGAACGCGCGTCCATCACATCAATCGAGCGTGTCTCAAATA GTCCTTTACGTACCAACAAAGTATATGCAAAAGCACCAAGCCCTAGTCTA TCTAACAAGGAATCGAGCACGCCAAAATCAACTGATGACTTTTTAGATAG TCCGTTTTCTTCTAAACCGAGTGATCCATTCAAAGATGTGCGAATAGGAA GTAAGAGCAAGAGATCGGCAGCTAGTCTAGGATTTGTTGAGGAGGGATCG CGTGAGGATTTACTGAACGACGAAGAGAGTTCATGTCCAACATCGATTGA AAACGATCAACTCGATCTTTTAAACGAAACGATTGATGAACCAAGTTTTG ATGATGGTTATCATACATTGCGGACCGAGAGGAGCGATCCTTGGTCAAAC TTAAGTAAAGAGGATCCATGGTCAAGCTTTGAAACGGAAACATTAAATGC TAATAATAACGCAATAACAAAATTGAAATCCACTCCGAATCTAACAATCG ATGAAGACATCGAGAAATCCGATTTCGATGATGAATCGATTGACTTCATC GATAAAAAACGAATCTCAGCGATTAAACGTCGATcaaaaaatgcacgata tagtGTTTATCAGCCCATGGATACGAAAAATTCAATCGATACTTTTgatt cattttccttggggaATAAATTTGCTTCGGAAACTACATTGACAAAGGTA GGTATAATATCTTTAAAAACAATTTAGAAAATCGTTGAATTATATTTAAA GTACAGCACCGTATGTCTGACTGCCAGGTAGAAAGAACTTCCCAATCTTT GCCTGGATTAAATCCAGAATTTTGTAGTAGGGGCGGCAAAAAGTAGAGTC GGGTGGAAAGAAAGTTATTTTAGAAGTCAAGTCTAAATAAAGGCAACCAG TTGAAGCACCAAAATAGACACACGATGTGCGTCTGACCAAATGATATTAA ACAGAAATCTTTtgacgagaactaattttgacttttgattaatttttttg ggcaaaaattgtgaaaacattaaaatttgGAGAGAACTAACTGTTACGAG TAAGGATTTTCTTTAAGTTTTGAATGCTAATTTGGTTCAGTTAATGAAAA ATGGAGAATAGAAAGGCTTTGGATCCGAAGTGATGAgtatttttattaga aagatTCATCGAGTCTGCCGTTTTACATCAATTTCGATTTTCACCAACtc attttactttattttactAATTCTTAGATACAGCCAGTTTCGGCACGGAA CTCAGGAACTATAGATCGTAGACGGCGTAGCAAAGACATTAACCGATCAA TGACGTTGTATTGGGACGGTGCAATGGACACTCCAACAAACCCGGAAAAT CTCGTCTTCAACGTTAGTATGAACGCTAAAATTCAAACAAGTAGTTTTCA AGACACTATCNGGCACGGAACTCAGGAACTATAGATCGTAGACGGCGTAG CAAAGACATTAACCGATCAATGACGTTGTATTGGGACGGTGCAATGGACA CACCAACGAACCCGGAAAATCTCGTCTTCAACGTTAGTATGAACGCTAAA ATTCAAACAAGTAGTTTTCAAGACACTATCTTACATTCAGCTGCTACAAA CGGGAATGTCGATATCGCCCGATTTTACGTTGAATCCGATCAATATCTGA ACGCCCAAAACGGGTTTAGGAATACGCCCCTTCATTGTGCCATTCTAGGG CGTAAAATGGATATCATTGATATTTTATTgactaaaaatttggatttATC GATACAAAATATTGATGGAGATACGGCGCTTCATTTAGCTGTACGATCAA ACATGGTAGATTTGGTAGCTAAGTTGGTTGCTAGGgacatgaaaaatatt aatttgcaGAATAAAGATGGCGACACTGTTTTgcatatttcaatttggca gATGAATGAAAAAATAGTCGAGTTATTAATTTGCGATGAGCTTAATATTG ATATTCAAAATAACTCGATGGATACTCCCTTACATTTATCCGATAAACTA AACAGCCAATTAAAATCAAGAATTCTTGAACAAGCTTTTAAAGGACCAAT CGGAAAACACGATCACGATCACGTGATATCTTCCGACCAATCAAAAGACA GTTTAGGAGAAGGGAGCCAATCAGCAAGAAGCATGGATAATGATAAATGT ATTGGAAATATCACAAACAACAAGGCTGAAACACTCTTACATATTTTTGC CGCACAAAACGAGAAAGACcttcttgaaaaaatcttaTCTCTAAGATGCA CCAAAACAAAACTCAGGAACTGTAACTCAGAAACAGCACTTCATGTAGCA GTTAGAAACTCAAGCATTGACCTGATAGAACCACTCATCAGAGAAGATTT AGAACTTCTCAATATGGCAGATAGCAATGGGGACACCATCTTACATTACG CAATCAGAGCTAAAAACGTCGAATTAACTGAAAAGTTGATCAAACTAGGA ATTGACTTGAATCGCTGTAATAAGCTTGCCCAATCTCCGCTACATTTGTC CATCAGCGTTGAAAACACTGCCATATTGAGACTTCTCCTGAAAAAGAATG CTAACCTATGGGTTCAAGATAATAATGGTTGTTATCCAGTACACTACATT GCTAAAACACGGAACACTGAAATCCTCCAATCATTTGCCGAGTTATTTTC TATTCAACCAATCACCAGTCAGCATCGACGAAATGACGTCATTCCGCTCc aaagtgacgtcatcaatataATGGATATGCTTGATAAAGAAGGGAACAGT CCTCTCCATACATCCGTTATCGAAAATAACGTTccgttttttaaactttt tgtccGAAATGACCGTACTCATCTGACgtcacaaaacaaaaatggagACA CTGTTTTACACTTGTTGGCTCGATATAATCGGAACAGATTTCTTGATTTC CTTGACTTGAGCCATGTCAATACAAATGTACTAAATAACAAAGGACAAAC GCCTTGGAATATCGCGTTAAGCCGTGAATATAGCGATGTAGCGATGTTTC TGTTACAAAACAAATGGAACTTATCAATGGACATTTGAGAGTGGACATTC CTcacagctgacacacaacgatgcttcaacgtttttctaatgttcataac cgttcatataacgttagatgaacgttaaacaatgtTTTGAGTCAGCTGGA GCTCAGCTACCCGAAATCACTGTGATTGCGTTATAAgcctgattttcatt ttttgataattGTGTGATGGTAGTGAAAATCGATTTTGACCAGTGTTGAA GGAAACTGTATTTATATTTATTGGAAAAAATTACAACTATACTTATgata ataaagaatttcttacTTAAATGACGTTCcgtcttttaaattttttgaga aaagccTTTATTCATTTGACAAGAAA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00006912TCONS_00006912Clytia hemisphaericatranscript
TCONS_00006913TCONS_00006913Clytia hemisphaericatranscript
TCONS_00006914TCONS_00006914Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00006912-proteinTCONS_00006912-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000072supercontigsc0000072:702781..710006 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.07 0.07 0.07 0.03 0.17 0.14 0.71 0.76 0.15 0.16 0.19 0.14 13.73 13.21 0.59 0.84 0.93 0.79 20.72 20.48 1.43 1.55 1.01 1.23 2.75 2.85 0.79 0.37 0.18 0.1