XLOC_003570 (gene) - C. hemisphaerica

Overview
NameXLOC_003570
Unique NameXLOC_003570
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000066:256007..262371+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_003570 ID=XLOC_003570|Name=XLOC_003570|organism=Clytia hemisphaerica|type=gene|length=6365bp|location=Sequence derived from alignment at sc0000066:256007..262371+ (Clytia hemisphaerica)
caattgagcataactttcgatctaatcaaccgaatttgataaatgaccca
tcaaaatttaagtttatttttcttctttccaacaAAATAAGAatgattct
ttaaaaatttttagatttcgagaaaattagtttaaagagagaattttttt
tgtggcgcaccggGTAGTTTCTGACTTTCAAAGATTCAAAGTAGCTAAAA
ATCTAATCTAGAAATGCCAAAAATTGTGACTTTCCAAACCATCAGCCCTA
CTGGTGGCTCGCGATTTAGGCTTGTATAACACCCACAGTACAGCTTACAG
CGAGATGGAAAAGGGTTAATacaaaacttacatgcataattggctaTATT
AATGTGTAATCTCGCAGAAGAAAGAAGATTAAATTTGCATCTATTGAAGA
CTATATACCTTttaagggaataaatttttgcggggattatatttcggGAA
TTTCCGCGAATTTCGCCTTTTTCGCAAAATATAATCCCTTGCGAAAACTT
TCAAACTCTCATAAATTGGCGAAATTTAATCcttgcaaaaattaagtttt
ttacgCTGAAAATTCTaagttttttgataaaattcagaaacaatTATTTA
GACTGCTTGTAATACCATACCAAGATCAGTTCGATTTTaggtactttaaa
tcgcttggggagtggCATATTTCTATACCAAATATTTTAGATTCAAGTAA
ATAGAATCACAGAGTGctcaagaaaattcgaaaaaatttgggcaaaatat
CAAGATAATCAATTGTGTAGGTCCTTAataattttaattcaatttaacAT
ACATGCTACATAGAACATTGTTTCATGTTGGTGCAATCTTCAGGCAATGC
AGTGCGTTgtagattttatcaaaaataaaatgatataaaatatttgaaat
aaaatctacAGTACAATACAATGCAGTATTGCAATAAGATTGCGCAAGCA
TGAAACACTGTGTAGCAgttgcaaatattttaaattgaatcaaaattatt
tttgaaaaggacCTACACAATTGATTAAAAGGTTGTTCTAAATCAAAATG
ACACCTAAATTAAAGTTTTTGTCCCTGAGGGAATTGTCATCATGCGCTTA
CCAACTTCAAGttttgacatggattcatgtatTCATGTACCTCGATTTTC
GTCAGCATTTCATGTTCTTTCCGCTGGagccatcagattttgaatatttt
caaaaatataatattcttgcccagccacctgatgaccccatctggcaggt
ggccaggtggtaaaatttggtgttactgtttaaaattaagttttagaccc
tctaaggatcatctgtgccaaatttcatgcttttatcaccatctgaagta
ttcttatgTTTTATGTGCTAACGGACCTCACTAATAAGAGCTTTTTTGCA
TCTAAAAGGAACTTAAAactcaatgaaagaaattttcaatcatttcagAA
AAATGTCAACCAAAATTAGCTATCCCTGATTGAGCAGCCTTTAGGTTGCA
ATTGCGGGTAAATAcctttaaaagaaatttttcaaatttggaaagaatta
atttttaaaacatggcCTGTTAGTTTGTCATCCTTATTTTTTCAGCTGAG
AAGCAAATTCAGCAAACTTTTGAGGCAGTTCTTCAAACTTGCCAAGATGG
GGCAGGGTGCAGGGCTTTTTGGTTTCTTCATCTTGTATAGATGTCAAAtc
tcaaataaatttataaactttttgactgaaatctttcaaatttgtattca
aattttctgaaagcATTTATCAGCAAGAAGCtatattttaaaactttcat
gAGGGAATCATATATAAATTTAAGCTATTGTGGTAGATTTTCCTTGTCAG
GACCATGATattgttgattttgaaatatttaaaattacTAAGAGCTCTAt
gaggaaaaaaaaaagaagtgttTAAGCACATTTTAAAGAGCTCAATCATA
tagcttttcttttttaattgaaaaaggCATACATTTGTGAactcataatt
tttgaaattattttagtttaaaagaaattgttataattttgaAGCAGGGA
AATAAATATTCATTGCTGTTTTTAGACTATTAATATCCCTCTCTTTTGAT
CTGAAATCTTTCAATGGAGCCACGCCTAACATTTAGACTTTAATgtatta
attttaaaataatgtaGTGGTTTGCACGAGATGTTCATTATCAACAGGAT
CTTAAAATGAATAGTGATTTGTCTGCAATGTCTTATTTATAAAGGTGAGT
TTCGATTTCTATAATATACTTTTTTATGGATACGGTTTTTTTGTACCAAA
TTTGCATGTTTCATTTTCTAACATGGTGATAACATCATATTTTATTCTGA
GATTCAGCGAAACTTAAAAGAATGTAATTTACAATATTTGATGATTAGGA
CTTCTATTATGTCATCATAAGTTTTTGATGTCATCTTTTGTTACTATAAT
TACTACAGTTTAAACAATTTATTGCTTTGCCATGGAAACGTGATGCTCTC
TATAAAACATGCATTCTATTAAGAGAACAGTTAAAAACAATCTTTTTAGT
TTCAATTATTTATGCCTTTAACTCACTCACTTTCTCTCTGTTAATAGTTG
ACTTGTTATCTTATTTCAGAAGATATCTCTTGATGGCTGGACaggcattt
ttaaagaaaaatctgCTCACTATcgctttgtttttgttgaatattgaaaa
tgtgtTTGTCTCACGTCCACCAATATTCTGGGATCCCTACCATAAATTGT
AAGTAGTTCAATTTCTTATCAAATATCTTTGTGATATCCAAGTTTAACTT
TGTTTTATTAACCTTCCTTTTTGTCTTAATTTTAGGTTTTCCTGCAAGGA
TCCTATTGTGAATGTGAAAGAAAATGATTTGTTGAAATTTGTATGCGCAG
ATAAAGATATCTCGTCCAAACCAAATGCACATTCTTCAACCCTTCACGAA
GTAGCTTATCTTCTAGACTACACAAAAGAACAAGAATATGAAAATTGTGA
TGCTAGAAGTGAGTTAAAATGAAAGACATCTCTTtgtacaaaagaaatta
ttttcattattagGAGATACTCATTTCAGTTgacttaaaacttttaaaat
aagtCTTAATTTGGTGAAAGTTGTATATTGAAATTAAATTACTACTTATT
CATTTCTCTTAGATCATGACAATGTATTACTGAACTGCACATCAAAATAT
ATGGTTACACAACACCGGATCACCCAAAATGCTCTTTCACCTGACGCACC
TTCTTTCACACCTGGAAAGACCTATTATGTGATAGGTAATAAACATTtcc
taaaaaatctttttacaaaatgaaaaagtatAGAAACTATTTGCTAAAGG
TCAGAAATTAAATGAATTGATGCCATCAAAGTTTCTCATTGAAATTCGAA
TTATTTCTCTTTTCAAATAGCTCCAAGTTATCGTACAAGCAACATGATTA
ATAACATGGTTGGTGGAAGTTGCAATGACACATCTGATGGTGGATATCAT
TTAAAGCTGAAAGTCCATGTTTGTACTgatcaagaaattcaagatggTGA
TTGCAAGTTATGTGAAAGTGAAGGCTGCTATTATGAAGGTCAGTTGTTTA
TTAGTCATAATAAGTCTTactgtcaaaaaaatttgtttcctACTGACAGT
TTTTCATTCTCATGCAATTGTTAGGTTGACAATTTTGGTAGAAATATGAT
GAAAACCTGTCCTTGCattcacattatcattgaaaaaaaacttttctttt
ccctTACAGCTTGTGGCAAGCAATGTGACGATTGGATTGATCCTGTCGAT
AATGACTGTTACAAACAAAGACTATGCAACAATACACTTTTAAATACACA
GTTTAAAGAATATGAAAAGATTGACAACTGTCAAATCTCTAATAACCCTG
CTGTTACAACAGGTACTTTAAGNGGTTAAATGAAAGACATCTATTtgtac
aaaagaaattattttcattattagGAGATACTCATTTCAGTTgacttaaa
aattttaaaataagtcTTAATTTGGTGAAAGTTGTATATTGAAATTAAAT
TACTACTTATTCATTTCTCTTAGATCATGACAACGTATTACTGAACTGCA
CATCAAAATATATGGTTACACAACACCGGATCACCCAAAATGCTCTTTCA
CCTGACGCACCTTCTTTCACACCTGGAAAAACCTATTATGTGATAGGTAA
TAAACATTtcctaaaaaatctttttacaaaatgaaaaagtatAGAAACTA
TTTGCTAAAGGTCAGAAATTAAATGAATTGATGCCATCAAAGTTTCTCAT
TGAAATTCGAATTATTTCTCTTTTCAAATAGCTCCAAGTTATCGTACAAG
CAACATGATTAATAACATGGTTGGTGGAAGTTGCAATGACACATCTGATG
GTGGATATCATTTAAAGCTGAAAGTCCATGTTTGTACTgatcaagaaatt
caagatggTGATTGCAAGTTATGTGAAAGTGAAGGCTGCTATTATGAAGG
TCAGTTGTTTATTAGTCATAATAAGTCTTactgtcaaaaaaatttgtttc
ctACTGACAGTTTTTCATTCTCATGCAATTGTTAGGTTGACAATTTTGGT
AGAAATATGATGAAAACCTGTCCTTGCattcacattatcattgaaaaaaa
acttttcttttccctTACAGCTTGTGGCAAGCAATGTGATGATTGGATTG
ATCCTGTCGATAATGACTGTTACAAACAAAGACTATGCAACAATACACTT
TTAAATACACAGTTTAAAGAATATGAAAAGATTGACAACTGTCAAATCTC
TAATAACCCTGCTGTTACAACAGGTACTTTAAGCACAACAGGTGCTTTAA
GCACAACTGGAAGTGTCAGCACTGTTTACACTGTTAGTACACTCAGCAGC
ACCAGCACCACAAGTTCAAGTTCAACCAGTTCAGTCACAGTCAGTCCTGT
TCCAGGTAACTCAGTCAGTAATAATAAGTAATCTAAAAGCTTTGTTTATA
TGCTTAAAAGCTAGGTAGCACTTTGACAGTAAACTTATTCTTGAGGTATT
TGCCCAGTATGATGTGTatttatattgaaaattttagtaacagacttttt
caagttttagtaAACTTTAGATAACTGGATAAATTGAGTTGTTTTAGTTT
ACCTTGTACGTCCTTTTTCTTTCAGGTAAAAAAACTGGCGAGGAAAATAA
TAAGGATGACTCATACAAATACATGGGCATCGGTATTGCATTTGCATTGA
TTGTAGGTCTCGTTCTTGGCCTGGTCATTAGTAAATGGCATTATGGGAAA
AAACGTCAGGAGAATTTTGTGGGTAAGTTCCCTTAAATTCTTTGCATtct
taaatatttctttttatatatgaGCTGACCAGTGCTCAATTAAGCCAATT
ATATATAGATAAATAGGAAAGTAGGAAAATTGGTAGAGGTACTTTTACCA
CAGCTAATACTTTTAATTAATATGACTTATATTGTCTTGACACAGGTTAC
GTCATCCGTTTTTTAGatagaatttctttttctttcatttcagacATAGA
AAGGAATAACTCCAAGCATAGCCATATCAACGAAGGCTTTCAATATGACA
ATCGTAAAAGTAAAGTCACAAATTAAAATCATCAGTCCCTTCtataatat
ttatttcattttttagaaatgttgataataaaaatttgtaaatatttttc
ttttgagcaTATTATTTATAAGATGTTGATAGTAGACCAAATTTATTTTA
CCACGTTAAAATTCTGCattattctatttttattttgatatctGAAACAG
TATATTGTATTACCCTATGTGTATTTTAtatgttgtattttttttttatc
gcTTTAATAAAATGTTTTAGCTTGATTTCTATTCCCTTTTGAAAGTATGC
AAAAGTATGGCATACTTCTTTCttctgaaaataaaaagctTCGTTATATT
ATGCTTTCATAGTCAAAAGACTTTCGCAAATTCCTCATTTTTTGATCtat
gaaatttagaaattgTTATTGCTCTAAGTTGAGGGCTATGGTACTACAGA
TCTTTCTGTTGAGTGGGTAGTTGGATGAGTAAAATAATTCGATTTACATG
TGTGTGAGTTTCGTTATCTTTATGTATTTCCAAGTATTTAGGAAAATGGC
ACCTctatcaaatcaaaatattttatttatgagAACCTCAAAAGGATCTG
ATTCATCAATCATTCTCTTTATGTCCTGATTCAATTTTAAGATTCATAAT
ATATTTATGATTTATATAGAAAAAAGGATATAAAAATTAGACTACTGTAC
TGTATgtggaaaaaagaaagaaatatgttttgaaaagtctccATTCCTTT
AATATGATGGAAAAG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00006225TCONS_00006225Clytia hemisphaericatranscript
TCONS_00006226TCONS_00006226Clytia hemisphaericatranscript
TCONS_00006227TCONS_00006227Clytia hemisphaericatranscript
TCONS_00006228TCONS_00006228Clytia hemisphaericatranscript
TCONS_00006229TCONS_00006229Clytia hemisphaericatranscript
TCONS_00006230TCONS_00006230Clytia hemisphaericatranscript
TCONS_00006231TCONS_00006231Clytia hemisphaericatranscript
TCONS_00006232TCONS_00006232Clytia hemisphaericatranscript
TCONS_00006233TCONS_00006233Clytia hemisphaericatranscript
TCONS_00006234TCONS_00006234Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00006227-proteinTCONS_00006227-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000066supercontigsc0000066:256007..262371 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
17.44	16.41	127.02	146.87	45.97	32.83	28.95	29.22	16.03	27.92	18.34	14.43	37.79	24.9	17.45	13.3	17.45	28.86	18.58	22.98	17.21	15.98	18.95	19.71	43.72	42.91	154	143.01	15.59	15.36