XLOC_003254 (gene) - C. hemisphaerica

Overview
NameXLOC_003254
Unique NameXLOC_003254
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000059:497372..504971+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_003254 ID=XLOC_003254|Name=XLOC_003254|organism=Clytia hemisphaerica|type=gene|length=7600bp|location=Sequence derived from alignment at sc0000059:497372..504971+ (Clytia hemisphaerica)
GTTGAGGATCTTAATACTGGTTTTTGCTTCAGTACTGGCTGTTCAAGCTG TAGACCGACTATTGACAACTCAGTTAGGTGATTTCGGCCCACCGCTTCTT ACGCGTCCAGGAAGAACTTTTCGATATCCTATCAGAAATAACAACTGTTC GTATTTTGGAGCCAGACTCGAGCAGTTTGTAATTGTAAGTACTAAAATAC AATTAATACAATGGCTATTCCTTCCAGAAAAAATaattgtaccccctatg ttgaggaggtctttcggggaaaggtgaccccctggatttttccCGACTTT TCAGAAccccttttgattttttttactatttttggaCACCCTGGATTTTT AGCCTTATTTTACTGAACACCCTGCAATTTTAATTGATTAAGAGCAACGT TGGTGTGTACTTGTGTGTATTTTATATTCAACacaaaacatagaaataca caAAATGTATGTCATTTCCTTTAAAATAATTGGGGTTAGGTAGACTGAAA AAACTGAAACACCTATCTTAGGTTCCAATGTCTAGATATGCGGTTTTATT TGCTCACCCGGTAATGTTAATTAAGAAAGCAAATGACAACGCTGAAACGC TCATTCAAAATTTCTCTCGACGCTCATCAGGGCATCTCAATACAAAGACA CGGTCTTTAACAGGAAGGGTAGAGGTTCGAAATATCGTTTTCTcgtcaaa ttttttgctgaaaCCCGGAatcccaaaaattgaaaaaaatgataacacCG TAACACGGGtttgtagaggttaaaataccGGAATAGCGACAAAAATAAGG CTAATTACCGTCAAtgtttgattttaaaatactgttttcccgtctctttt ttcgtcaaatcccgtaataccgtactaaaaaagggtcaTTCTCGTCACGT AAAAGTACAAAGCCCCCTTTAAATCTTGTGCTCTTAAATTTAGTTAAAAA TGAACATTATTTTCTCTTCGTGATGGCATGGCTTAAGTAGGTGTCTACCG AGCACTANAAAAATGAACATTATTTTCTCTTCGTGATGGCATGGCTTAAG TAGGTGTTTACCGAGCACTATAGAGCATTTAAAACAAtggagcaagtacg tcggaaacacgCAAAGGAGTGTAACGCTcgttaaaaaacaatgaaattac aattacaaatatcTTCCCCTGATCAGTTCGACAGGGGCTAAAACCGCCTA TGCTCTGAGTACAGTAAACTcacgctaattcgaacttctgcTATTTCATA CTCAGTCCCGGTCAGGGAGAGGCTCTCTTAATATACTTTCAAAATCCAAt ccctctgtaattcgaacaaataatatTGCCTTATTTCTATTATTAAAACT TAAATATTTGGATGAGCCACAGGAAAGAAACAACAAACATTTTAataaga tttctttttcttttctaaggTCAATTACAATGGGATTATCATGATGGACG AAGAATCCGATAATGCATTAACTAGATGCCCGACAAATGTGAAAACACTT GCTGCCAACGTCATTGCACCATATTGGTTAGAATATGATCGAGGTACCGT ACACGCATTTAAACATAACAATGACAGGCGGCAATTACGTTctgatgttt tgaaaagaattgtCGATGAGTTTAATGTTGCATTCGGTAATGGTGCTGTA GACTTTTGGGCAAAAGACGTTCGCAGTCCAATCAAGGGGCGCACAATGTC AGTTTCAAGCATCGATGAAATTAATGTGTTTACTTGGAATAACATGTATA ACACCATCAATACCAAAACCTTATTGGTAAGTAGTCAACCTCGTTTATCa gctttttctatttttattgatAACTCTAGATAATATCCAGCAGACAATGG CTTTTTGAACGCGTAAGATTACTTCTCTTTTTTGGAGTTGTTGCATATAA ATAGTATTAGAAGTCATTTTTCAACGCATAACTGAATATATTAGTTTTGa ataaaatacataaattaccccaaaaatgagaaaatgggAAAGACCAAGAC CTgtgaattaaaacaaaaaaaatcctgaaaaacgcCAAAAAGGACAAACC AAAAAGATGCTCAAATACACGTCcaacaacaataaaaacaaaattagacG TTACAAAACAAATTTGTGATTTCAGCATCAGCTGTCGTGTTATTGAAAGT AGAGTGTCTCTGGTGCCTCCAGGACCTCGAAACTCTCAAACACACCCTCc aggggattaaggcggggtcaaaatgcttgcaacgttacaaatcattttca gaagctccttttgggctcaaacgaagcgtatgactaagtagaataggatt cagtctaggcagatgttttttcattttgaaattttgcgtaattcgcaaaa aaactcaattttgcgctattttgatgacgtcataaaaattgaaatcccaa taacttttgatagaattatcaaaataatttcaaattttgaccaaagatgc atattattaatgtttttaggattagaaaaagattttaataaattttgatg acgtcatcactttttagccaaaaaactaaaatccttaaaaaatgctgacg tcatcaagattttgaaaattttttgaaatcttttgaaaatttgcattgaa atgcatctttggtAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtatg acgtcatcaaaatagcgcaaaattgaggatttttgcgaattacgcaaaat ttcaaaatgaaaaaacatctgcctagactgaatcttattctaATTAGTTA AACGCTTTGTTTGAGCCCAAaacgagcttctgaaaatgatttgtaacgtt gcaaggaTTTCGACCTCCGCGAACCCGCCTTATTCCCCTGGAGCCACAGC TGACCGAATCAAACTAAATGAATTTTTTCTCGTTACACAAAAATAAGTGT AAACGAGCGTAAAATCGTTTGGTCTCTTTGCTCAAGCCACCATTTGAGGA GAAAACCAGTGGGATGAATGTCCCATTCTCCTGTTCTAAAATGCGATTGA GCTGTTGCATTGTAGTGTAACTTTGCACCGTCATAAAtctttatgacgta ttgttttgagaagttttttttgaggGGGAACTTACCATCctacaccaggg tattctctggcgtgtATCAGTATCGTTAATAAAGCCTGGGACAAGGTAAT TTGATTTGGAGCAATAACATTCTCTGTAAAATCTACTGTTAATTAAGGGC ATTATGAATTGAGCTATCCAATGTCTAGAAAATCGCTCGTTAATAATAGA TAGGGAAATTAAAACAAGAGCAGATATATAGCTTAGCAATTCCGTTTCAG AATTGAAATCTCGAATGTGCCGAACACAGATTTATGCGTACAGCACAGGA CCGATCTTTTTATCAAACTAGCAAACTAGCCTGTCAATTAATCATTTCAG AGGGCGGGAAGATAAGGGTGGGgatgtttttttaaataggaGAACGAGAA AAAGTTGGCGAGAGAGTGCTGATTAACAGCTTTCAGCTCCCTTCTGCCGA CAAattttcttcctacgcttacctaactcttAGGCTTACTTTTCCCACGT GATACCCTtttatcaaatctttttttttttattttagagaaAACGTCACC TTTTCCAAGTGGCTTTGATTAAGTTGACCAATGGACAATTATACGCTAAA TTCATTTATGACACCCTTGGCGCGAATGGTAATGTTAATTTTCTGGACAG AAGTCAAGATACACCATGTGGAAGAGCTGAGGTAAATCAAAGATTTCATT CGCAGGTTTATACAGTAGCGAGTTTGtgtttgcacttttgaggacgataG AGTGACTGAAGCTATTTGGAATAAACCGCAGTTCTAACCCGCAAAATGGA GGACAGTGCTTGTTTACCGTCGTCCCCAGTTAACCAGGATCTAGTGCCGA AGAATACGCATACATAACCTCAgtagtaccttatcggggaaaacttcgtc ggggaaaattttcgtcggggaaaaattcgtcacttgctggtagttggtaa acgcattaaggccggggaaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNcgcattaaggccggggaaaattttcgtcgggaaaaa tattcgtcacttgtccaaaatttcgtcacttttccccgacgaagttttcc ccgataaggtatctggAAAAAGCGGAAATCATCCAGAAAAAACTTAAAGG CATCATTCAATTTTTTCCTAGTATCAGGTGTTCCTTCAGATTTACTTGTT TAGTACTTCATACTTAGTTTATGCGAGTTTATGTCAATTCGGCTAAAAAC TTACCGTCGTTTAGTTGAGATTCCACCCTCCAGAACTAAGATTCAACTAA TTGTTTCAGGATTTTACTGTTGTCTTTTTCGGGGATGGTTAGCTGAagta aaaaacaggtttttctaGAGGTGCGGGAAAAGGTAGGAAACTGGTTAACT CCAAAGCTCATTTTTTTCaactacccagctggcacacaacgttgtttcaa cgttcatctaacgttatatagacgttgtgaacattagatgcacgcttttc tttttaataagaatacactttataagaatgtccatgatgaaaatggccaa aaaattaagaatatgctaagaatatcaccatcatgtaagtttgctactca agctaagaatgccaacTTTAGagtattttcaattataaattgtcaattac cttcaagtaaggctcactcctttcacaaaaatgccattttatgtttgaga cgtatgtactaaatctAGTAAttaaatctagtttgaattagGATCCCAac ttaagaatgctgtaagaatattttagaataattttcttaaaacagttaag aatattcatgatgaaatggatttacacgattcttataaataaaaagcgtg taaacaTGGAAACAACGGtatatgtgccagctgggtagccAGGTTCCGGT CTTTTTCCGCTAAAAGAGTGGCAGTGGAATCTAAGCCCGGGAAGTGAAAT TTTACTCAATGCGATCCAATACATTCGTGACTTCTTGAGGTAAATAAATC ATCGCAATAACTAgtccaaaaaaaatatttaccagGGACGCTACTATGGA TCGAAATTTTAGGAACGAAATTTGATAAATGCTGACGAAAAAgcattcaa ttttaattttggctaATGACATCAAAATCTTTTAGTTTAAGCATCATATG GCGAGTTGAAAACTTATGTGGAAAGGTTTTGTGATCTCTGTGGACTTAAA TTTAAGTAAAAGCGATTCTCATTTTCTCCATTGTATTTTTGATGGATAAT TCATTAGGTTGTAGGAGGTGGAGCAGGGGTCCGAAAAATTACCATCAATT TGGACATAAAAATCGGTCTACCCGACTACTcaaagtgttaaaaaaattcg TAATTAATTTATCAATAGATTGGTATTGGCATCGAATTCCCACCTCGTCC ACAATTTAAACAAGAACGTTCATTTAACGACGAATTTCCATTGAATGACC CCCGAGAGTTTGAAGAAATCTCAAATGAATATCCATTTTCTCATTCTGGG AATTACTTCTTCGACTTAAACGCTGACTCATGTAAGTtattaggcttctg ctcatcctctagcgaaaaaggtttcttatatataccttatcggccaaaac ttagtcggccctaagtgactaaattttggcttggtgactataATTAGGGC GGAATGAAAATTAGGGCCAAATTAAATGTTTATAATTAAGCCCCCTctat tttccagtattttaagctttctcctattttccatctacttgtaaatttag aaatggcccaaatttttagttggTTTTACTTATTAGTCGGCctttagtga ctaaattttgacgaggtgactaaaattagggccgactaataattaaggcc gacgtttattaagttttggccgataaggcatataggaagtatatctatat aagtgtgcgattcagactagtaaGTTATTAGCTTCTTAgcttttttctct aaaatgaaAGTCTTTGAATCTTTTTGCATACTCCAAGATCTGTAACAGAC AACGTGACCCGTTATTCAatctttggaattttttttaataaacataATGA ATGAAGCATATAGTTATTCTTTTCACCATTTCAACCGTTATCCCAAGGAA ACATTTTTCAATACATTTTCTATGGTCACgtcttaaaaatttgaaaaatt cttatcAGCCAGCATTATTTATAGCTTGCAAACCAGCAGCTATGCTGTAA AGAGCTTATGAAAGTAGACTttgctgttcttattttttgacacttttagc CCAAAGTTGAATATATTCTTTCTCTTCTAGACAATCAACCTTTCCCACCA ACATTAAAGAGATGTAGTAAGCCAGGCTGTTACTTGACTCCAGAAGCTCA ATATTTTTTCCAAGAACAACAAGGAAGGCCGGGACAACCAGGTGCTCCAG GAGAAAACAGACCATCTCAAGCAGAAGCAGAACAGGAACTCAACCGATTC TGCAAGAACCGTGATGATGGACCCCACCAACTTGCAGCTTTTTGTGATGT TTTTATTTACTGCTCAAATAACATTGGAAGTTATGAAACATGCAAAAATG GCACCAAATTTAACCCAGAGGTCTTGGGTTGCGATCACGCTGTCAATTTC GAATGCGCATACTCTGGACTTGATTGTAAGTTATTGAAGATCATTAGTCT TTCATTGATTTTTCATGATCATTACATTTGTAAAAAGACCACAGTTATCC TGCAAATCACCTTTTTTGTGTACAAACTTTGACTACTATAAAGAAAGAAC GAGATCCACCAAGATAGTTCAACGTTTTCCACTTCTAAAAGACTATTGAT AACACAGCaatctaaattttgttatttttcactggtcacactttcttaga aaaaaacttgctaaagttgtttttttttcgaaaaaactcgcgaaactcgc gaaatataatcctcgCGGAAATTAACCCCCTAAGGGTAGTATCGCCGATT CTCTATTTGTCTAAATATGAATATAACTATCTCTCCTTACCAGTATTTTG TTTACTTCTTTCAACCAGTATCCGGTATTCTTCCACTGATCCGTCAACCA GCATCCAAACACAACAATCTCTGCTACTTCAAAGGATACGGTGAAATCCC TGATCCATTAACGTGTGACCATTTCTAtgcatgtacaaactcacgatcCA TCCGTATGCCATGCCCAGGTGGATTGTTTTTCCAACCGACCGGTGAACGC TCTGGACAATGCAATTATCCTGACGAAGTTGCCTGCAAGAATGGAGATCG AAGTGTCAAGAAACCTTTCCAtccaaaaaatttacattaaatcTACAATC AGGGACAGAATACTTgacacaaaagggaaattcaccggggtgttttcaaa ccacaatcgatttgtaagtgctctaaagtaggttcgaagggtagagtttt aactctgagttttaacgctagacttaagacttaggaccttaggatctgag
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00005738TCONS_00005738Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00005738-proteinTCONS_00005738-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000059supercontigsc0000059:497372..504971 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.3 0.23 0.07 0.27 0 0.08 0.28 0.1 0.28 0.34 0.08 0.18 0.27 15.72 0.19 0.27 0.2 0.12 0.05 0.2 0.09 0.2 0.06 0.03 0.27 0.37 0.19 0.08 0.09 0.09