XLOC_002917 (gene) - C. hemisphaerica

Overview
NameXLOC_002917
Unique NameXLOC_002917
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000051:143758..152130+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_002917 ID=XLOC_002917|Name=XLOC_002917|organism=Clytia hemisphaerica|type=gene|length=8373bp|location=Sequence derived from alignment at sc0000051:143758..152130+ (Clytia hemisphaerica)
ctgtaaaatagCTTTTTCGTTGATTGCAATAACATTCGGGCAACGTGGAA
AGTTGTACAGAAAGTGAAGACCAGAAATATTGCGAATCCAAAATGGCGTC
CGATTAggtaatcaaaatcaaaacaatcatccTGAAAGTCGAAAATTGGA
AAGTCTGAAAGTCTGAAgcttgaaaataagatttttaaaatggtaagtta
ttctttttacttttttttccttgaacttttggaaaattttggaagaTACT
GTAATAAAACAggtaaaaatcatcaaattgaatgaaaaaataacttaaaa
tctcaaatattttcattttgaagaattggtgcaaaaaagtgaaacatgga
aaagtttcattaaCATTATTTATTGCTTTAATTGAAGTGcaggatttgga
aaattttctatgtttagttttttgcacaaacccatGTTACTATGGGAAAa
caaaatgaaaccactgaaaacgaaagcaCACTCCAAATCTTGTAATCTTG
GATATATAAGAGTTTATAAGTCTATACTGACGGCTGCAGTGGAgcaaaca
gttagtcacactagcgtccctcCAAAATAAATGTGTATATATAAAAACTT
AATACTGCAAAAGCGCTACCGTCAACTGTTCTAACTTGGGAtaactatct
gacaaaacatgggatggcaattcggccacgatttcaccgaacctccaaag
tcatttgatttgagttaatgaacgacatattaaaaaatacacaatttttc
TTTTGCACAGAGGAGgcttttaagtcaaaatatgaaaaaaatccgtagtg
gacagttagtcacactagcttcccgccaaaatgcgtatcaaagattaatg
ctgcgaaagcgctatatcgtttacttgactctcaagcaaaaagatgcgct
gcaaaacttctaaagggattcatgaaaaaataacccggcgctttttaatg
aaaataacattttcaaaaactttgagaaattgcctaaaatttgagccata
gatgaaaaaatttaagccaagccaaccttgaaaactaatttgaagagtNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcattta
catgtgcggaattatttttactttagcgtataaacaaggccttaaaaatc
aaagcgctgtctcgggaattgaatgacaaaatttggttggttgatttctg
gctgctgcacgttcgcaatcggtaattttgtctcattttaagtttgcaag
ttttaattgatcgttatgggatcttgaacttgattcaggtaactctcatc
cttgttgttgaaatatatcctgtagatgactgatgttgttttttctgaaa
gcttaatttcctagtgtgactaactggtggaacacacgcgatgaatgtct
ggaacaaagaaAACCATATTAGTTGCAAAACAATGGAGCGCTTGATGTCA
CTCACGCGTCAacttacacactcgttatttgttaatcagcgggcgttctc
taattctccaatcgacgttcggtcattttgaatgaaaacaaaaaagttaa
aaagggtgcgctatcagtgaaagttatcgtgacatgttatgataGAAAGT
atatatgattgataaacttggtggagttatcaaaacaaatttgttgtcaa
agagatttaacagtaagtgaaaatataagtataagtaagtatattcatct
ggtggctgtcggcggagccgggagtgagggagtctatccccttttctatt
tgcgctagacctgggagatcgaatgctgaggtggagcgccacacctaaNN
atctaagctactcatccgctgagttggcggtgaccggggatcgaacccac
aacccttagattgtaaggtgaatgctctaccgactgagctacccggtcac
gtgaaaatacaggccagatatcaacagtcccatgttttgaccaatcgttt
caagttagagcagttcACGGTATATCGTTCACTTGATTCCCAAGCAAAAA
TATGCGCCACAAATAAGACTTCTAAAGAAAAAGGGATTCATGAGAAAATA
AACCAGCCTGCCCTTTCacagtttgcagagtatggcaagGCTGCACTCGA
GAAAAGATTCTGAAATACCAAGTTAAGCACTGGAACAAcgcacctgataa
attttggtccggACAAGGTGCACCTATACCTCGGAAATTCgcccaaaaag
gcaaaaaaatgctaaaattaaCTGTACTTGAGGAAAAAATAGCTGAACTC
TGCACTTGAGATTAAAAAGCTGTCTGAACTTGCACCtgaaaatctcaaat
tttgcacctgcACTCGACTTTTTCCGAGCTGTGCACTCGAGATCTCGAGC
AAACGTGCCACACtctgcaaaacttctaaagggattcatgaaaaaataac
ttgGCCCTTTCtaatgaaataattttcaaaaactttgagaaattacctaa
attttaagccatagatgaaataatttgaaccAAGCCAACCTTCACTAGAT
CTGTGCACTGCCGGGTAGACTATTTCTCCAATATTTTGCTGGACCTtgaa
cactgacccatttacatgtgcagagTTATTTTTACTTTACGTAATCAAGG
CCTAACAAATCAAAGCGCtgaaattgaatgacaaaatttggttggttgat
tctGGCTGCTGCACATTTAGcaatcagccattttgtttcatttcaagttt
ttttaattaattgtcgTGGGATCTTGTACTTGATTTAGGTAAGACCACAA
TCTTTCaagtcggactagaaagtgttgGACTGCTGAAAACTCCCTGGAAA
CTGTTCTCTTGGTTAGTGCTGGAAATAACAGCCTGTAATCAGTAATCACA
GGACACTTTTTGGTTTTCATTTTGAAGGTTAAATTTTACTTTCCAGTGAA
AACTTCAGATTGcttgttgaaaaaatgtaataaaacaCTTTTTGTCTCTG
ctctgttttatttttgtttttgttttttgttttatctttttataatCATT
AGGGGCACCCCCAGACCCCTAGCTCCTTTTTTCtatgcttgaaaaatcaa
tgGCCAAGTCACAattccttatttgcagcactaATTGCATGAGAAATGTT
TCAATTTAAATAATTTGATAATGAATTATTTTATGGTTTGATCGATTCAG
TGCCTAATTTGGAAGTCAGCAACTTTAAAGGTTGTTTTGTCAGCAACTTA
AGGTTGTTTTGTCAGTGGACTTTTAATTGATTACACTTTTGTCTCACTTT
TTCAGGCTGAACCGGGTGGTACAATGCCAAAGACCCCAAGTAAACTTGAA
AGTTTACCCAAAGAAGATTTACTGAAATTGTTGAAAAAGCAAGCAAGTAA
TTCTAAAGATTTGAAAAAGAGGATTGAAGGTAACTGACATTTTTTTGTAA
CATCGTTCAAGTGAAATTAACACTCATCAGCTCTAAGCAGTAGACTATTC
TGGTTTGCAATTTGTAAATAATGCTAGTGCTGTAGATTCGTCTGATATCA
ATGCCTTCTGTATTTTCgtcatagctgtaggctggtcttcgaaacaaaaa
atcaaacataaacaaatacataataATTAATTGGTCAAAGATTGTTGATA
TATAAGAAATGTAAAGTGtcattaaccctttccggacgcatgatttcacg
gctatatgacgcaaacaaaaatttgatttttgactggcttcactaaaatt
acAATAGAAAGTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNatcttttacaaagctatgggccacccggtggcccgtgcgtcatatag
gaacacgattcatgggccacccagtggcccgtgcgtccggaaagggttaa
attcttgagaaaaaaaaactttaattatGATACtcatcactaaaaaacta
attagcatgctttccaCAAGAATATCaagatgaaaacaaaaatgataaga
AGAAACTGGTCCTTTTTGACCTCgacattgaaaatgaaaaatagggaGTT
GTATTTCTCAGCACCACAATAATGGGAAAACCATGTGTCCTAAGcatgca
aattattttgattacgTGACTTGAAGTgtaataaagttttaaaaatacaa
aagtttGCACGCATTTCATGTGTTATATAAAATTGCAATGTTAACTGAAC
TTCTTGTTTACAGGAGGCATGTTGATATTAGACGAATCTTTGTAGAATGT
TGTGACTTCTGACTATTTCCTACTTTTAAAGACCAAAAATTATTATGGTC
TAGAAGTTATGAAAGTTTCCCCTGACTTGAGAAAGTAAGTTTTTAAGTAC
ATAAACTTTAAAAACACCTCTATAGAAGCATTATATTTTATCCATTTTCA
GAACTGAATTTTACTTTGAGAAATGAGCGGAAAGAATATGAAAGATTGGA
GAGCGAGAAGAAGGACTGGATATCCCATGGTGTTTCTGCGGAATTCGAAA
AGAAGAATAAGGTAGAAAATTTAttctaaatttgttttaaatttgttttg
gttagaaaataatgttttttgaAAGCTGTGTTCATTCtattcatttgttt
ttttgcaGCTGACCAAAAAGGAGCAGGAATTGGAGCTAGCTGCACAGCTC
GGGAAAGAAATGCTTACAGAAAATGAtcaattacaaaaagaaaatcttca
actTAAAACTGATTTGCAGGAAACTGTAACGGTAAATTTATGTTGTTACC
ATACAACGATTCGTAAATGTTGGGCTCTCAAATAAAGTGGGAGACTCTGA
ATGTACCCTTGCTACATTTTTTGCTAGTATCAAGCCATTTAGAAGTTTTT
ATGCTTCCACTTCAGAATTAGCACAATTGTtggaaaaacattaaaaaaca
ttAATAAATTTTCCCTTAAACAAcataaaatattaattttcaaTATTACA
GGGGTATGAGGATGACCTTGACAAGATGATGCAAGAGAAAGTTATTCTTG
AAGAAACTTTACAATCTATGCAGCACGAGTACAAAACAGCCAAACAAGAA
GCTCTGGTAAGTTTTTGTAGTATTGAAATGTCTGAAGCGGTACCCTGCTA
GTTACTACATTTTAAACAATTGGTAGATGAAATTCTTTTTGCCATATTTG
AGATTTTAACCATTCAGTCatcttaaattttctttttaacatCGTTTGTC
AAAATAGAATGAGGTATTTAAATTAGGTTTAAATATCATCCATATGACTT
CTGTTGAGAAGTTGTATTTTATTAAGtgtttgaaagaaaattgaaccgAA
CTTCATAATCTGCTACCTTAttctcaaattcaaattttgatttttggtat
ctTATTGAAACGGTCATTGAACTCTCTTATGGTTGAACTTCATCTTCTCG
AAACTATTATTAATAGGGTCACCATTCTTTCACTTTCATTGAACTTTTTG
ACCAAGTTTAAAACAAGCTTTTTCTTGGCTTCACCTAATCACTGAGTAGG
ATGAAGTGCAaaatgtatgtctgtatgttcGTTTTTTTCTAGGNAATCAC
TGAGTAGGATGAAGTGCAaaatgtatgtctgtatgttcatttttttctag
gATAACAAAGAGGCATTAAAAgttgaaaaggaagaaaacaaaaaatcatt
gaGTGCTTTGCAACAAGAGTTCCGTGATTTGAAAGCCAAGAATAAAACTG
TGACGGAGAATGCAAGCACTAATAATTCCTcatcaaataccaaaatcaag
aaactgaaagaaaaattgaatgaactgACAACTGAAAATGAAACATTCAA
GGTATTTTGTATTTCATTTATTGTGACACCTTGTTTTGAAATAATCAGAA
CATAAGTATTACCTTTTAATGGTCAAAATAGACAACTTAGCTGAACTAGG
TTTTGTGTGATGACAAATGTATGTTttccatgaaaatgaaaaaaaaaaat
cattgtaaaTTGTGCCTAAGAATCTTAATCAGTGCTTCCGAATaagtttc
ttttgttatttctaattttgaataatcgtttttattttcagcaCAATCTA
TCAACTCTGAAAAAAGACAATAAGGACAAATCAGAGAAGATGTTGATTTT
GGATCAAGAAttgaaaacattacgtaatgaaatACTGGTGAGTGTTTATA
TTGTTATGTGGAAACCATATACATGGCCATTAGACTAGTTCACTAgttcc
cttgagagtggtttccacatagtagaaatctttttatattgcttttttat
aagcaactccaattttcaggCCAGCCTTGGTgctgcttagcattctagct
cattttctgaaaaatttgcatTGATCACACTTGATATTAAACCATATATT
TATGCTTGTTGGGCAAAGGGTTTGTTAtgcttagattatctaaaataCTT
TTAACTTACAGAATAGTGAAAAAATTTAATCCCTCGAGCCTTTGCCTTgg
ctgcttataaaaaagtgtatggaGCTTAAACTTTCGAACGGACTTTGATT
TATGTTGTTAATGAGAAATACATTTAGAAATCCCTCAAAATGACAAAAGC
TGTCTTTCCTTTTTATCTGTTGTTATTCTTCATAGGACTACCAGCAACAA
AACAAGGTTGATGTGACAGAGATTTCTgatcttgtaaaaactaaaGACGA
ACTTTTGCAGACCATTAAAGATTCTGAAAATAAGGCAAAGGTAAGGAATA
TAATTAATACTTTAAACCCTTTGAACgtatagtagttttgaaaatcttga
aaattttccatgattaattttttgaaactcaagACTCAAAAATGGCAATC
TTAAATCTTAAAAGGTAATTTCAACCGTAGGAGGCTGGGACCCAAAGTTT
AGGACTTGGAATTTTGACTGTTTCAATACGAAAAACGAGTTCCATGGAGC
CTAAGGGTAATGCAACTTCTCCTTTTACTTTTATGCAAATTTTGTAAACT
AACCTTTCAATTCAATGATTTGAGTATCTCGACTAATTGAAGTAAATGCA
AGCTACACCATTTTTCTCAAACAGCAACTGGAAGAAAATTTGCAGAAAAT
GAAGACTGAAAAAGACAAAATGCAGAAATCAATGAAgaccttgaaaacaa
aaaatgaacgCTATGTGCAAGTCGAAGAGGTAAACCTTGCTAAAAGCTTG
CTCTCTCTTTAAGATACCAttaaacaatgaaaatttttttcatttatcag
tttGCTATAAAGGGGAAAGGTCAAATTTTATTCAATCCCTCTTAAAAACT
TATTATTTATTAGGAGCTGAAGAAGCAATTAAGTACGATTGTTGGGGAGA
GAgatgatttgatgaaaaaatggcaaaaagcTTCCAAGAGTAACGTGAGT
GTGTTATCATCGAGGCTTTGATTCTCAAGAAAAGTTTTCTTGAGCATAGA
AATTGCAGTTCATATTGGATGAAGAATTAACTTTGAATGAGACCACGGAG
AGCTTGTTTGGTGTTCTTTTTCAGCACATTTTGTATTAATGAAGTTCTTT
AATGATAAGTTTGCCATAAGTCTTCCATAACTAAGTAAAACATTCACTTT
TAGAAAGCCAAGAGCAAGCAAGC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00005121TCONS_00005121Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00005121-proteinTCONS_00005121-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000051supercontigsc0000051:143758..152130 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.7	8.54	4.16	2.02	15.45	11.45	16.76	16.38	8.09	8.9	8.36	8.44	8.51	7.05	6.91	10.61	7.94	10.06	5.23	7.83	7.82	8.06	8.38	9.41	17.25	16.01	9.61	5.67	7.7	8.76