XLOC_002682 (gene) - C. hemisphaerica

Overview
NameXLOC_002682
Unique NameXLOC_002682
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000048:106543..115559+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_002682 ID=XLOC_002682|Name=XLOC_002682|organism=Clytia hemisphaerica|type=gene|length=9017bp|location=Sequence derived from alignment at sc0000048:106543..115559+ (Clytia hemisphaerica)
GAAAGTTTATAAACTGGAACACCAGAATAATTCGCTGTTTTCATGatgga
atttaaattggttccTGTACTTTATGTTATATGTACCATTGGGATTTTAA
TCAAGACTATTGCAACACATAATATTGTTCGATTGCCAAAAACTAATGAA
GGTACGTTTCCAGGGTGTatttaaaaagagacttttGTTTGAAAACTCAA
GCAAAGTCCCATGGTTCTCTTTcctatgattctgatagcgctcaagGTTA
TATCACGTCCATTTCAAAAAACGGTGTAAGTGGCTCTGGGTAGGAAATTG
AATGAGAATCTGAACTTGTCACATTGAAGTGAAAAAGGGGAAAAGGGTAA
AAGTTTCAATCAGGGAAGAATTAAAAGACGTCGAGGGGCCAAATGGAGCA
GTTTTTCAAAACATAGACGAGTTTAGTTTTAAAAAATCAACCCGAAGAGA
CATGCACAAGTCATACAGCTGGTAGTACCCCCTCTCCAGAATAATCCCTC
TTGAGTAAATAAAGTAAACTTAGAAAAACAAGAAAGCCTAAACGGCTTAA
AGGCCCAACAGTGTTGGTAGTGTCAACATATTCTCCGTGGTAGGGTCGTC
ATGCAACTTAATTTACAGGAGAATGAATTATTTCGatttgttaaccggtt
actagttcgaagcgggctacatgactttttgcgcaatgcaattggttctt
ttcgcatgacgacgggcctacattgtccaNAGAGCAGCTTGAGTCGGGCG
AGCAATAAAGaattaaattttctgaaataagTATTTATATATAACTAGAA
AGATTTGACCATGTCAATCGGAGGTATTAATTGTTTgtggtttttatttt
cttacgCATGCGCACAATAGTAATCCAGATAATTCAATTTCTAGCCTGGA
TTCGTCAATTGATAATTGCGCGcataggccccgacaaagtcaaATCTTTT
CGACCAGTTGCGTTTTAAAGGCCCATTCCGATGCGCGCTGGGCCAATAAC
GCTAAAACTTTAAGTAccgaatttgatttttgatatgcAAACATTTGAAT
TTCCTCATTTGTGTgcaattcaattatttttcatccacgggttaaaaaga
agaatttaCTAAGACCACAGAGACAGGGATGTCTGTAGGGACCATAATAT
CggttaaaatatattgagaatttaagTCAATTCCTTGTTTTTAGCTTTAG
CATTTTAAAGTTCGGACGAGAATGTGGCTATTTGTTAGAGttaattgaat
atttcaatttgggcgGGGTTTATAGACTTAATAGccatattctgagccct
attggaccgttcttgaacttttggatcctcagatcctaaggtcttaagtg
ttaagtctcatgttaaaactctacccgtccaacctaagttagagcgcttc
caaatcgattgtggctataagatttcgtgggaatttcccttttttctcaa
atattatggccgGTATTGCAGATACTAcgaaaattctttcaatttttttc
aaaagatttccgtgataattttgtttatttacaaACTATTACAGCCATCT
TCTCACTTCGCAAGAAAAACAAGCGCATTGCAACCACTGCATACAAAACA
TTCGAAGTGAACGAATTATTCGATTGCGCAGACGCATGCGTGTATGATAC
TTCATGCAAATCCATCAATGTGGACAAGAGTAATCAACCCTGGGTTTGCG
AGTTAGTTGCGGATGATCGAAACACGAAGAACGAATATGTAGATGCACCC
GGGGTCAATCACTATGATACTGGCTGGACAACCTTGACAATTATAACAAA
CCATGACCAAACTGCTTGTCTCATGTCAAGCAGTAGACATTGTGAATTTG
ATGCTGGCTATAATAACTACAACGTGAGAATTGAAACTGACATGACTATC
TGTAACAGCCACCGTGCCGCTATCTTTCATTTCGATCGACGTATTGGGCG
GCTTGTGCACCACTGTACTGGTTATCCAGTTGGACACCAGGCGAGCGATG
GTCTGATGAAGATTTACAAAACAGGCTATCCTTCAGACATGTTGCAAAAC
ATCGACTATTATCTGACAGCTTGGCGAAGAGATTTCAGTGAGTGGTCTGT
TATCATTTAGTAAACCTATTTAACTTTTGAAGGGAATATCTCCCAGGAAT
ATAAGAATACTTTGTACCAGAGTGAATCTCACGTTTATCttttcgtagta
cactctgtgcgcattgtctgtttgataaaaaatgccCGTACGGAAACCtt
tgcgatgaagtatgatttataaatagcaacatttctctcgtcgtctcccc
tctctcacccgTACTCCATCGCAGTGatctcaaatcagaaaagacaatga
caacagaccctctactacggcaatgaattttgaaattagtcgTAGATACC
GGGTTTATGTACGGACTATTATAAGAGAGACATTTGATTTAATATCCAAT
CATTATAGCCCAGATTCTTCTTCTTGAATCACAAATTGAACTCTTCTCGA
ATCTCACTCGAACAAATAAAAAAGTCCCCATCAATAAACCgtgaatggaa
aaaaattagcaaaCGGTTAAGGTCACTCCCGTTGTTAAAATTTATTGATG
GTGCCTCGTGGGTTTCGTTTTAAATTAGAgaccattttttggctttttta
agATAATTCTTTACAAAATTTCGCAAACCGTCTCCTACTGGATTTTTCTT
ACTACTTGGGGGAAGCCAGTAGCATTTCAACTGTATTTTTCTAGGGTTGA
TAATCATTAATATGACGTCTTgattattttagatattttaagaGGTACCA
ACTTTCACGCATTTCCATGTTAACGCGCACAATTTTTGATCAATTTGTCT
TGCTTTTTCACGTATTTTCCGAGATGGCCCAAACACTTATACCGCAAAGT
CTTCTGTATTCCTTTTCCAGGAGGTTATTTGTTTTTTGGTAACAACTGTA
CCTATGTAGGAATCAATGGATGGAGAGAAGGGGATGCTGTGTACCTTTCC
GACGCCTGTTCAGGATTCACAAATGCGCGAGTTTTCTACTTCAGGTCAAT
TGGTATGTCttaatctgtttttttttggttttaaatcACTAAATATTTTA
TGGATAGATGTGGACAAATAAAGTTTCCTGGAATATCACATGTTGGCCTT
TCTATCGAACTGGACTTTCTAGAAAAGTGGTAGATCTAACACACAGTAGA
TTCATACAATGTGATATTCACGGTAGTGTTAAGTCTTTCAATATAGCCCA
GTTGATTCCGTTTCCGGTTGCGGTATTTTTATTTGAGgatctaattaaaa
aatatagCTGGAAAGATAGATCTTAAAAAGAACTTTCCAGCCAACCCAAG
CTTTGCCTTTTTTGCTTTCtctaaatacaccttttcgacgaCTTAACTGC
CAATTGTCCGtgttaccaccctaaaaccgagCCCCATGACCGCGCGACTG
ctgtcgaaaaggtgtattgtatcTGAAATTGAGACTTCTGAAAAACGGAA
ACATCGAATTTCTCGATTTTCGTcgtataaaaaaagttaagcaGTTTGAT
GCATGCTTCTAAGAAACGATTCTTACATTCTGTCTCACTGTATCATTGAT
AGATAATGGTCCAGTAAAAGTGACAGCAATTACTGGATTAACCTCCAGTG
ATAGATCATGGAATTCGTACATTGGTCAATCGAAATTCCCAAACAATCCA
GATTGGTCAGGATATCAAGATGACTTCATGTCGTATCATATGTTTTGGCA
AGATCAGTACGGAATGAGGTTCGAGGCTCTTTTCATTCCTCCCTCGACTG
GCAATTACAAATTCAGAATCTATTGTGACGACATTTGTGAATTCAACTTG
GGTGAAAGCGAGGATACGAAAACACGAATCATCAATTACAAAACCCTTAG
CAGGACACAAAAATGGCTGACTTACAAGTAATCATTTATTCTCACATCCC
TTCTTTCTTCTTACTGTCTGATTATAGGGAACCCTAGGCTTTCAACGAAA
TTACCAATCTCAATACTCACCACATTTTAAAGATTTGGCTTTAGGTCCTC
ACTATCTGTTATCTACGATGTTgcttcattgctataaaattgaTTCTCTG
GTGTTCTAAGGCCCTGGTACCGCAGACCCATTGTTGCCACTTACCAACTG
GGAATTTTTTGTACCCTATAGAAAAATACCTTGAAATTCATACTAAAACA
AGGCTTAAAATTTCATTCCTACATGGGAAAGTGCTTTAACCTTAAGCTTT
AAGCTTtcttcacatgtacgtaaaattttacttaagaccttgaagggtgg
agaatttccctaagcttaggaagtgttttaaggccttatgtgaacggaag
gaaaagtcacgtaagaccctcttagtcaacaaaaactctacataatgtcg
gggaaattctcaaaagacagccttacgaacgattttccgtaaggtctaaa
gtaaaattttacgtgcatgtgattTTGAAAATCTATGATATTGCCCAATa
atgcggtggtaaaaaaaCGGTGTGctatcttttaatattttcaacaattt
ttcttCACAAAAGATACCCAGGACAAAACAGCAACTCATTTCACCATTTG
ATCAAACACAAAGAATACTACATAGAACTTCTGTTTCGAGAATTCGTTGG
TGCAGATCACGCAGAAATTACTTTCTTTGATCCCGATCGACAAGAATGGA
TTTTGATGACATCTAGGTTCCTTCGAAAGGCCAAATAAAGTGGGGCGTAA
AGGATTTGTCAACGcttaaataattttgattttgacaccttcagcaaaat
ttctaaaatcttCGTTTTGTCAATGCAAGGGACTTTCGAAGCTGAAATAC
TGTCATTATTTTGGTTCATACCGAAAGACCGACAAAAAAGGGTAAATGTC
GTCACATCGCCAAACACATACGCCACCCAATATACAGTTAATATTAAAAT
GATGGTAACCTTTATTTGGAATAACATTTTTGCGAACATCCACACTGAAG
TTCTAAAACACCCTAGGGTGCACtaaaggtaaatgacctacaaTACCTgt
ggcccttaagggtatattCTCCAAGCTTCTCAAAATGCACagtaagggtc
gaaatcagcAACACTGTAAATGTGTGAGACTTTGAAAATCTGACCagatt
ttgcctgaaaatggtcaaaaattttcaaaaaaatgcaccgtaagggtcga
tttttcgctcaaatttgctcaaatgtgcaaaattttctctataccgtaag
ggtccgatttcaaaggcctaatttttgGCCGCACGTATGGTCATTTTTTA
ATCGAGTGCCCTCCCCCACTGGCAAATGTcaaagatgaaaagaaataata
aaagcactgaataaaagaaatcaaaataatgTTAAATCTGGATGTGTTgt
tatgcgcagatatgtaatttttgcgcagatatgtaatttctgcgcatata
tgtaattattttgcgcagatatgtaatttctgcgcaaatatgtaNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNttataagaatcaaagcaataactcttga
tagacggtcatttacccttcggtaattagttcttacaaagtaaataaggg
atggcgcataatatgagcattatcatttcttataagcatatactttataa
gaatcaaatcaataactcttgatagacggtgatatgccctttggtaatta
gttcttacaaagtaaacaaggaacggcgcataagatgagcatatttattt
ttcttataagcacctattttataagaatcaaataactCTTGGTAGAATGG
TATATaccctcgaataaacacccctcctgaaagtcttaaaattaaaaaga
cgcCCAGGGCGTTTATTTNATAAATCTAACATTagtttataaaaatttta
taagaacaaggatttttttctaagtttcagagatttgatttatcaaataa
cagctaacaaatattgtttaaaagttatgaattgtgttcttataaaatgt
tgcttataagaaaaaaatgtttctcttttgGGCACAatcctatgtttgct
ttgaaagaaccgatcaccgaaagctaataatcattggtttgttgtgaatt
gtgttcttatcaagttgatgcttataggaaaaataaaagtttctttttta
ggCACAATCCcatatttgctttgaaagaccgatcaccgaaagctaataat
cactggtttgttatgaattgtgttcttatcaagttgatgcttataagaaa
aattaatgtttCTCTTTTAGGCACAATCATATGTTTGCTTTGAGAGAACA
AATTGCcgaaagctaatatctattgtTTGGAgaattatgaattgtgttct
tataaagttgatgcttataagaaaaataaatgtttcttttttaggcacaa
tcctatgtttgctttgaacaatcgccgaaagctaatatctattgtTTGGA
gaattatgaattgtgttcttataaagttgatgcttataagaaaaacaaaa
atttcctgatttaACACAGTCCCCTCGTTGCTGATAGAACCAATCGctga
aagctaataatcattggtttaagagtaataattgtgttcttataaagtta
atgcttataagaaaaaaagaatttctagcttaagcactatcctatgtttc
ttttgaaagaaccaaacgccaaaagctaatatctattggtttaagagtta
tgaattgtgttcttataaagttgatgcttataagaaaaataaatttttct
agcttaagcacaatcctatatttgctttgaaagaaccaaacgccaaaagg
taatatctattggtttaagagttatcaattgtgttcttataaagttgatg
cttataagaaaaataaattcttctagcttaagcacaatcctatatttgct
ttcAAAGAACCAAACACcaaaagctaatatctattggtttaagagttatg
aattgtgttctctTATAAagtcaatgcttataaaaaaaaaaaaattctag
cttaagcactatCCTATGTTTGTATTAGagaaccaaacgccaaaagctaa
tatctattggtttaagagttatgaatNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAACGG
TGTGctatcttttaatattttcaacaatttttcttCACAAAAGATACCCA
GGACAAAACAGCAACTCATTTCACCATTTGATCAAACACAAAGAATACTA
CATAGAACTTCTGTTTCGAGAATTCGTTGGTGCAGATCACGCAGAAATTA
CTTTCTTTGATCCCGATCGACAAGAATGGATTTTGATGACATCTAGGTTC
CTTCGAAAGGCCAAATAAAGTGGGGCGTAAAGGATTTGTCAACGcttaaa
taattttgattttgacaccttcagcaaaatttctaaaatcttCGTTTTGT
CAATGCAAGGGACTTTCGAAGCTGAAATACTGTCATTATTTTGGTTCATA
CCGAAAGACCGACAAAAAAGGGTAAATGTCGTCACATCGCCAAACACATA
CGCCACCCAATAGACAGTTAATATTAAAATGATGGTAACCTTTATTTGGA
ATAACATTTTTGCGAACATCCACACTGAAGTTCTAAAACACCCTAGGGTG
CACTAAAGGTAAAAATGACCTACAATACCTgtggcccttaagggtatatt
CTCCAAGCTTCTCAAAATGCACagtaagggtcgaaatcagcAACACTGTA
AATGTGTGAGACTTTGAAAATCTGACCagattttgcctgaaaatggtcaa
aaattttcaaaaaaatgcaccgtaagggtcgatttttcgctcaaatttgc
tcaaatgtgcaaaattttctctataccgtaagggtccgatttcaaaggcc
taatttttgGCCGCACGTATGGTCATTTTTTAATCGAGTGCCCTCCCCCA
CTGGCAAATGTcaaagatgaaaagaaataaaagcaCTGAATAGAAGAAAT
CAAAATAATGTTAAATCTGGATGTGTTATTCATTCTTGCGGTTTTTATGA
GACTGGTTGATTTTTTTGGTCCGTTGAGCCTTGGAGTGGGTTTCAAAAAG
TTTCCTTGCAATATATATAATTGTTTTTCTGACTTATTTTGTGGATAGTG
TTATGGTATTTTCTAAT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00004736TCONS_00004736Clytia hemisphaericatranscript
TCONS_00004737TCONS_00004737Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00004736-proteinTCONS_00004736-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000048supercontigsc0000048:106543..115559 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.03	0.04	0.04	0.08	0.02	0.04	0.05	0.02	0.03	0.02	0.79	0.18	0.26	0.16	0.05	0.02	0.6	0.38	0.45	0.26	2.44	2.73	1.05	1.92	1.12	2.91	0.23	0.18	0.16	0.45