XLOC_002030 (gene) - C. hemisphaerica

Overview
NameXLOC_002030
Unique NameXLOC_002030
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000030:667250..673784-

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_002030 ID=XLOC_002030|Name=XLOC_002030|organism=Clytia hemisphaerica|type=gene|length=6535bp|location=Sequence derived from alignment at sc0000030:667250..673784- (Clytia hemisphaerica)
GCCTCGACAACAGTTCAAATTGAGCAACAACCACCTATTCTAGCATCAAA
CATCACTTCAGAACTAAATCTTGCTTTAAATGATCAAAAACCAGAAACGA
AGAAACAAATACGTCGCCGACGCCGACTAAACCAACGTCGTCGGGTTTTT
ATGTTCGACGACAGCTCGTCCGATGATGAAGAAAGCGAAAACGAATCTCC
TCGATCGTGCCACGATGAAAAGTCGGAAGAGGTGAGAAAGAACATGGAAG
GATTGAAAGAATTGAGACAGTTATTGATGAAGGAGGCCAAAATAACGTCA
GATATAATGCAAGAATGTGGTACGTATTTTTGTTGAGAAATTTCAAATGT
TTGAAGTGTTCGTGCTCATGAAAGGTTGATAAAAACAAGGCAAACCAATT
CCTTCAGGCCATTTTCATGTCCTTTTAGCGTCTGATCATTAGACGCTGCT
CCTCCTGAAATCACTAAAATGTTGGTAATAACAGCCTTGTTAGCGGAAAA
AAACTAGAAAAAGTGCCATTTTTGACCACCAACGGACGCTGCCCTGCCTT
TCTAAAATTAATTTCTGTAGAGTTTTGTTAATAGTTTGAGAAACACCGTT
GACTACGTACGGGATACAATTTGTCAACTAAACCTATAATTTTGGCTAAC
CATATTTTCCAATGCTAAATATAACAATAGAAGCAAGCAGAATGTTGTCA
ATGGATTCTAGAAATCCAAGATACCACAATAGTTCATTTACAGTTACAAC
TAAAATCATTTCCAGTTCCTTGAATACTTCAAAATTGTCTTTTCAAAAAT
ATACTGTTCATTGTCAGATACTCTGAAATTATGCTTCCAAAAAAAGTCTT
TGTGTCTGTTTCACAATGTTCGAAAGTTGCCAAAATCCAAATACTTTTGC
TGTTCTGTAGTCATTGGGGATTTTGAGGAGTTTGATTCTTTCAACCGGGA
ACGTCCGACCATTCATATTAAAACGTCCTTCCCAGCTCAGTTGTTTTTCT
TGACAGTTTTCTCTTTTAATTTGGTGACATGTCGTTCGCCTGGTTTCCGT
GCTGTCTGAGCGGTCACACGAAATTTGACTTGATCTTCGTCAATTAGATC
GAAACCACCCGCTGCAAAAAGCTAGAAAAAAAAATTAAATAAAGAGTTGG
CGTCCATCAAGAGCAGATAGAGGTGTACCTTGAAGGAAGCTTTTAAAATA
TGGCACTCTGATTCTTAGATTCCTAAAGTAAAACGTATTTCCTGCGAATT
TCAGGATAGTCGTTTAGCACTAACAATGTAATTTAAGAAATAAAAGGTCG
TGTACTTGAAAACCCAACTTTAGAACATCGGTTCACAGCCAGGAGAACAT
GGACTGGGTGTTCCTATTTTTAGCTTTGTTTGAGTGCTAGATCGAGTCCT
TTTTTAGAGAAAAACTTCCTTTGGAAGGAAGAACCCCCTTATGTGGTAAC
CCCCTTAGGAAAAACATTTGAAAATTCAGACCCCCCCCCCCTTAGGACAT
TCTAAAGAAATTTCAGTCCATCCCTTTAAAATTGCTTAAAATTTTGAAAT
CTTTGTACATAATTTCATTTTCCTTAACTGGCAATCCCCTTAGGGAATTT
AAACTTTCAACAGCACCCCTCCCTCGGTGTATGGGTCATCAAAATGCAAG
ACCCCCCTCCTAAATGTGGGGGGGGGGGGGGAAAAAAAAAGGCCCCCCCC
CCCCCCAAAAGGGGGGGGGGGGGGTAGAAACTATGTTATTTTTGTGTAAT
AAAAATCATGAGATAGCAAAGTTCAACTCACAATAAGGAAATATCCAATT
AGGTACAATGTAAGGACGATTCCAATCACAATGTAAATTTGATCGTTGGT
GAAAGTAATTGAAACACGTCCATGGTTATCTTCATCTTCGTGGTCAGACG
AGCTTTCTGTTGTACCATTTTTCGGTGACGACGCCAAGATCTGTTGTTTG
AAGAGGTTGTTATGAAAGATGGGAAAATTTATAGAATTGTACACTTGTTG
GGTACTGTAATGTGTCAAAGATATCATCGATTGAACTCAATCACAGACTC
AATCAAACATGAAATCAAATATGACAATTTTTGGCAAAATTGAAAGTTCA
ACCTATGCATTTTGTTGGTTAAAAAGTAGTAAACCTTTATTCAAAGTAAA
TGAATCATTTTTATCTTCCATACCACTTTGCCACGTTTAGCCAGAATAAA
GTCTGATTAAAAAATTTGAAAAACAGTACCTCTTGTATGTAAACAGCCAG
TAAAAACATCCATATCCAACGACATGAACTGAAACTTCTCTGCCATAACA
AACTCAATCTCATATTAACCAAAAAATCGAATAACAAACAAAATTAGATG
TGAAGATTTTCACTCACATATGAAATTATTTAATGTCTAGGTTAGCTGAT
TAATAAAAACATGGATATAACAGCAGTTCTAAACTTTATATTTCTTTCTT
TGTGCAAATACTCAAATAATCATGATAAAGAATTCTTATTTATGATATCT
AAAGAATTTCTATTCGAGCTTAATAGCCGTTGCTTTANAAAGAATTCTTA
TTTATGATATCTAAAGAATTTCTATTCGAGCTTAAAGCCTTATATCTGCT
CATTAGCAACTTCAAGCTTTAGAAAGATTTGATTGAATGCATTTTTCCTT
CTCTAACAAAACAAAAACAAATATGCCATTTAATTTTCGAGCTATAGCCT
CGTTGATTGAATTAGATTCTTTTATAAGAAATTAACCTGTATAAACCAAA
TATTCTTGGGATATTCCTTATTTATTTATGTAGATAGTACTCACTGAATA
CTCTAGAAAACTGGGAAATAAATACAATCTAATATTCGAGATAGCCTAAA
GTGTACGAGTCTATCCAGCTTAACAAAATCAACCAAATACATAGCTTTAT
TTCCACTATAAACTGACATCAATTTCATCAAATTCCTATGTTCTTATAGA
ATAGCTTATCTATAACGATCGTCATTAAAATTTAACGAGGAAGAAGCCTG
GTTTCCATCGAAACAGGAACAGAGGCTAATGAGAACTGAAGAATCGAAAC
TCGCAAGTACACTTATTGTGGGCTAAAATAGTCTATAAAGCATAAATATT
ATATCAATCGTAAAAGGGGTTACGCACGGAGAACGAGTCTCGTGTTCGCA
AAGCGAAAGGATTCTATAGACGCCTCAAGCCCACACTAGTTATGTAAGAA
GAGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCC
CATAAAATTCCCGATAGAATGAGGGGTCAACGACCTCCCAATTCCTTTCC
AATCTCGAGTTATCGCATTTTTTTGTTTTGATGACGTCATCAGCTAAAAA
TGGCTAAAAATTCAGCCAAATTTTAAAGTCCTACTCAAGCCTTATAAACC
TTACCATCTCATTCCCCATAAAGTTATCGATCTAATGAGGGGTCAACGAC
CTCTCAACTCTTCTTCAAACTCGAGATATCGCATGTTTTCTATTTTGATG
ACGTCATCAACTGAAAATGGCTAAAAATTCAGCCAAATTTGGAAGTCCTA
CTCAAGCCTTATAAACCTTACCATCTCATTCCCCATAAAATTCCCGATAA
AATGAGGGGTCAACGACCTCCCAACTCCTCTTCAAACTTGAGATATCACA
TTTTGAAGTTTTTCCCAAACCCGTGACGTCAGAGGGTCCCTTTACCCCTA
ATGTTGTCAACGGTCAATTCGCGAATTTTGAAATTTTTGCGGTCAACAGG
TACCTTATGCCCCAAGGGTCCCAAAAAACCAAGAAACGTCAATTTTTTCC
AAGGGAAAGTGGGTTTTTAAATTTGCGAAAGATTGACACTGCAACGACTT
CTTCTTAAAAACGCTAATTTTCAAAGCTGAAACATTCCAGAGGCTAAACA
TGTTGGAATAGCGGCTAGACGAAAAAAAAGGTGAATTTCCATTTTTAGTG
CCCGCATATCATTGAAATTTTGTAAATTTTGCTTACGCGCATGCGTTTGC
CAAAAGAGTCGCACTCCGCTCGCTAACGCTCGCTCCGTGCGTAATGATAC
CGCTGATAAGGAAAAACTGCTGATAACTAACTTTAATGTATTATACTCTT
CACCTTTATTCAGCTGAAGCAAATAAAAGCCTATCGGAGGATCTAGAAGA
TAGTGAAAAGCTTGACAGGTTGAAAAAATGGATACGAGAATTGCACACAG
GACTGGACACTAATGATGAAGAATCGCACATAGGACTGGACACTAATGTT
GACGCGGAAGAAGTTGGTTATGGCCCCAGGGACGACAATGTTGAAGCGTG
GCGACCGTTTCGGGTATAATTTGTCACTTTTGGATTTTGGGGCTTTTATT
AGCATTAGGCATTAGGCACTTTGGATTCTTGGAAATGTGGGATTCACAGA
CTATTTTTAGGCTTTAATGGAATATAATGGGAATAAATCAAAGTCTCTTT
CTTTTAATTTGAATATATTTAAATAGGATCTAATTTTTAAACTTTTTTTT
TTGGGGGGGGGGAGATCTTAATGGTCCTAAGCCTAAGCTGTTATAAACAT
AAAGGTTGTATTCTTGGCCTTTAAAAAAACAGCATATTGAGGGAAAATTA
GGATAAAAAGGGGATGGGTAGGTAGGCATTCGATGCTCGTGAATAGTTTA
AAGGCTAAAAAAGCAAACAGTGTTGTACGTAGTAATCAACGAAATGAATT
TTTGTATGTTTCTCTGGTCAAGAGTTGCCCCAAGACAATGGCTTATATTA
TAAACAAACAAAAATTTCTTCTTATAGGCATGCGCCAACTGCGGCACGTT
TGGTTACCATTACTGGTGTAACACCTGTCACTTGGTTTTCTACTGCAATG
AAACATGTCAACTACAACACTGGCATGCTCAACATGAGAAACAATGTCCT
GGTGATGGGTATGTTACAACCTCCAGTGAGGATGAACAAAGTAATGATAT
CAAAGAAAGTGAAAAAGGCTCTGAAAAGAAAGTTTGCCAAAGTAGGACAA
GTGAATGGTTGAGAGAAATACGAGGGAAATTTGATTGTGACTGAGTAAGT
ATGAGCAAAGAAGGAATTTTATAAAAGGGAAGGGTAGAAGAATGCGTCTT
GGGAGATGTTGCCAAAAAGTCAAACAAGGCACAAATCCTGTATTTAAGCG
TTTCCATACCATAAGTTATCCTGAGAGAAGGATTTTTTTAACCACTCATT
TATGTAAAATAAAAGCACTGGAAAAATGTTACACTTTTGTGCAAAAAGGG
GAATTGAGAAGATACACAGGCCAAGCTGGTAAATAAAACAAATGTTGTTT
TTATATTGTATTAAGATTTTTAATCTTTTTTGTTTTAATTTTTCATCAGA
CTGTACATATTGTTGATATATTTATTTTACAATAATTTATACAATTGTCT
ATTTTGATTGGTTGGTTGGTAAAAAAAAATTATCAATTCTATTCATTGAT
ATTTATAAAAGTCTTTCTTTCTTCAGACCATTAAGGTTGATTGTGATGTA
AGTGTTCATTCATAAAATGCTTAATTTAGGGGAATAGTTTACAACTTGTT
ACATCTCAGCATAACTAATTCCAGGGTCCAAAACCGGACAGCAAACATTC
CACCATACAAAGTTCGATAGACTCTTAAATTGTATCTAATTGTATCTTTC
ATCTTTGGGAAATCAGTTTTGGATTGTTTTTTTAGTACCATTGTTTTGAA
AATGATTCAATTTATTGAACAGTTTTTACATGGTCTTCCAGAGTAATCAA
AAACAAAGCCATCCAAAAAAAAACAATGCCATTTGATTCAATTTCCATTT
AAAAGCAAAACCTTTGCTTTATGCAAGGATTTCAAATGTAAAAACAATGC
CAACATAAAATAAACCAATAAACCATCAAAGCAAAGCAAGGCAAAGCAAT
TATCTACATAAGAAACCAAGAAAAACAAATACACCATGTATAAAAAAACC
AGTATAATACCTCTCTTTCTCCAATTTTCACTCTCACTGCACCCATTTGT
TAAAATCGTTAAAAATCTCATTGAGTCCTTGTTGTTGTTGTGGGTTCTGT
TGACCAGTTTGATTTTGTTGCATTTGTTGTTGCGGGTTTTGTTGTTGTTG
GACTTGATTCTGTTGAACTGGGTTTTGCTGCTGTT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00003664TCONS_00003664Clytia hemisphaericatranscript
TCONS_00003663TCONS_00003663Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00003663-proteinTCONS_00003663-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000030supercontigsc0000030:667250..673784 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.53	0.87	3.08	2.59	2.79	1.97	4.72	6.88	0.71	4.32	1.87	1.62	2.42	4.1	1.91	1.6	2.89	1.51	0.38	0.31	0.81	1.75	0.92	1.91	40.1	12.95	1.6	0	0.57	0.6