XLOC_001985 (gene) - C. hemisphaerica

Overview
NameXLOC_001985
Unique NameXLOC_001985
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000030:333450..342159+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_001985 ID=XLOC_001985|Name=XLOC_001985|organism=Clytia hemisphaerica|type=gene|length=8710bp|location=Sequence derived from alignment at sc0000030:333450..342159+ (Clytia hemisphaerica)
CCGACTCTTCTCTAAACTTGCCGACCTAAAAACTTTTATTGCTATTTCGA
CGAAgagaattttttcttcttcaaaaattacaaaatgtagacaaaaattc
catgaatgaacaaaataaaagaaattttccgaccgactgactcatctaaa
aaaatctagggtcgggtgacagTAAACCAGGAATTTTTAGATCCAGCCTG
AACGAATCATGTTTTGGTTTCAATAGCTTCTTCATCATCAACATTCTCAT
TTTGGACAGCCTCAATTTCACAAGCAACATCCTCATCTTGGGCAATAACA
GCCTCGATTTCACAAGCAGCAGCCTCACTTTCATTCATACTAGCACGTGG
GTCACCTTTACATTCGAGTTCGTGTCTTTCCGTTCGTTTTCGTTTAGCAA
AGCCCTTTCCACACTTTGAGCAATGGAAAGGATAAAGTTTCAAATGAACC
ATGTTCACGTGGTCTTTTAAACGATATGAAGCTGCAAAAGCTTTTGAACA
ATGCTCGCAAACAAATGTCTTTCGTCCTTCTTCGTGAACAGCCAAATGTC
TTCTCAAGTGAGGCATATCTTGACAAAATTTACGACAATAAGAACATGTG
TATTTTTCAATCATCGCTGGTTTCATTGTATTCATACGAGCCGCAACTTT
CGTCTTTGTTTCGCTAATTTCCTCAATAGTAATTTCTTCCACAGGCTCAG
GCGCTCCCTCAAAGTCATTTACATCGACAGCCTCGGTCCCAGGTTCGGCA
TCAGTATTTATTACGTCATTGTTTCCACAAACAGTATCATGCTTTTCCCA
ACACAATTGTACATCACGACATAATTTATGACAATAATTACACGTGCTTT
TCTCAATTCGTTTCCACACTCTTTCTTCCATTAATTTGCTTTTGATTTCA
TCTTGAGCCTCTTTCGATAATGTGCTGACCAAATCGAGCGTCAGCAAACT
ctggaaaaataaaatacacCTGTTTCACAGATCAACCTACACTACAACCA
ACTCCCCCCTCATTCGATCTTCAGGGAGCCAAGAATAGAAAGACTCGAAT
TACGAAGAGTATTTCAAATGACTTTCTAGCTGAGAGGCGCTTAATATTTT
AGTTGAATCACAGAgggattcgaataatagaaagaaTTTGTTTCTCGTGA
CCGAGAAGATAACATAATTTTGCACTGCAAGAGGgatattttggacatat
ttAACAAGGCCTCAATAGTAGTAACCTGCTTTAACCGgtgtattttattt
ttccttaTTAGTTTACAAGCCCGTATTTGTTTACGACTGTTGCATATTCT
AAAGTCTGGTGATGTTCTACAGCTAACTGTTAGAGAAGCAGGGTGAAATG
TCAACTTTTGATACTTAACATGCAGCATGTTCACTAGTACTGAAAAAAAT
AGGACCAAATTAAGGGTTTCGAACTTTTATTTCATGTTTAGCTCCCACGT
GTGCCCTATAAGCCTGACTGATGCAAAGAAAAATGATAGCACTAACCACA
TATTTCTGTAAAGCTCGAAGGAGCCATCTAGTGCGCTTTGACTGAAAAgt
gtggttaggtaggaaatcctacctaggtggcgtgacattacaatagaatt
tcagcgcttgaccaataagaagcttcgcaggtattcaaaaacaatagcaa
caatatgcCAACTAGCATCTTCAGACTCTACAGAAATCTGTGGCACTAAC
GCAATGATTACTAACCGGTTATTACCAACATATTGTGAATTTGTAACAAG
ATCTTTCATTTACGGTTTAGACCGATGCTCGTGGCGAAGTATTCTCCGTC
ATTCTTCGTCGACAACTAAAAACAACAATAACATTAGAGCTGAAAAACAG
AAGAGCTTAGAATGTAAAAATCATAATATTTGATACAAAAGGGGAATTAC
CTGcgaaatctaaaacataacaatGGTTTTTAAGTGCTCTAATTTACTTC
TCAGATGCCTAATAAACGGGTCCCGGTAATTAGGTCCTCCGTTTattccg
accccccccccctcgtttATTAGGCGACCGAGAGTAACACTTTGGACCTT
AAGATCATAGGATCCGGAAGTATTGAaatcgaactttaaattctgaaaac
gtCCAAATGAACAATATTATCAANtcccccccccccccccctcgtttATA
AGGCGACCGAGAGTAACACTTTGGATCCGGAAGTGTTGAaatcgaacttt
aaattctgaaaacgtCCAAATGATCAATATTATCAAtttattcgaactaa
aatattgatcTCCTCAGCTGGAAAGCAGCATAAAAaagtctctgtaattc
gaatatttctctaGTTCGAAGAAActtccttgaagatcgaattagagaga
gctaACTGTATCCTGCACTTCACTGTTCATAGCAAATATCTTGGAGCTAA
AAGGTTCTTTGGATAATAATAATACTTCGAAATTCTTAGCTTTCCAATGT
GTTTGAAAAGTTCACTCAAACACCCCTGTGTTAATggtaaattgactttg
atttcatcccttctcaaaaatcaatgtctaaaaattgcactccaaaacca
tcctcactggattttttaacctttgatcaataaaacttttatccccattg
gTATTTCAATAGGGATTTATATCTtcactgaagaaaaaaagttccaccgg
ggctttgagacaggggtgtattcaaGCTCTTTGAATGCTCAGACAAAGAT
TTATCATCCCCCAAATATTTGTTAGATGATAGGAAAAGTTTAAATATGAA
AGCCTAGAGATACCTAGGCTTGAAGCTTTGATGCAATGCACCCACTGTTT
CTTTATTATCAAtagagaaaaaagattttttaatgaTGAAGTCAATCGTC
AAACACGGTAACCATGGTAGAAATTAAGTCCTCATTTCTACTCTTGCTAC
GAGTAactaatattttgatttaactgacaataaaaaaaacttaaaaactt
atcatgaaattttcaccttGAATCCTTAGAAACtaatcaaaacatatttt
ttctaaTCAGAGTGATAATTCCTATTCACGATTCCGATTGTCTGTTCATC
AGGAAACGGATTAAAAACTGGGAACTTGTTTTCGATCGGTAAGTGTAAGG
AAAATTGTCAGCAATCTAAATCTTTCGtataaaccttcaaaagatctCTT
CCTTAACCTCTAACTGGTTGACCACCCACTCCTCACTTTAAAGCCACATG
ATccacaatcaaggtcataatatttgagaaaaaagggaaatccaccggga
agtttttgaaccacaatcgatttgtaagtgctctaaagtaggttggaagg
gtagagttttaactctgagttttagcGGTAGACTTAAAagcttaggacct
taggatctgaggattcaaaagttcaaaaatagtccaataagactcagaat
atagcctggaagtctgccagcccctcccaaattgaaatattcgattaaat
taaaaagatagccaaaaatcgactttctcgccagaactttaaatcttgaa
aaacgttaaaataaccaaaattctcaatatattatggccTTAATTGTAGT
ATCCAGTAATCGGGCTGTTATTTGAATAACTCCTAAATCAAGACTAAAAT
AATGGCCAAAAGTAATGGaatttcttacttttttggTATGAATTCacaaa
acccccccccccaccttTGACCCCTTTACAATGTGGAATTTCAATCGAAC
TTGACTCTGCAAGATTGTAGTAGGGGAGAAGAGGAGCCAGAAAAACAGTT
GAATAATTAGGATTCCATTTACTTTTGGCCAGTATTGTAGTTTAACAACA
TTATAGCAGGTACCTTATTGATTTCTTTATGTCTTGCTTTGCTGACAATC
TCCTCCAATACTTCACCATCGCCTTTGATCAGCCTAAAGATGAAAGAAAA
TAAGAGTCTAAAACATGAGGGTTATCTCTGTTTCACAAAGTGCTCTAAAG
CAAAACAAGCAGAGGAATGGCACGAGTAGAGACTGATCTAAGGGACCAAC
CAGGTAGTCTGATacacagacctctatagatatatttCTTTTAATAATTG
TTTTCCCTGAAGGATGCGCAGTTTCCGGTTCAAATCCCTACTCTTTCCTA
TTTTTTTGCTAAGTTCATTTATAAATACCCAAGCCTgatggccgtggacc
ccgtgaaaacaactGACTTCCCTAAAAGTGCTAACAGCGAGCATTCCACG
TATGAATATCGCGCGACTCTGAGCCAGAGCTGACGGATAAATACACCTAT
CTTTCCTTAACGACGCGGTCGCCTTTTGAAGGGTCTCTTAATAAATTTAC
AAGGCGTCAGAACTGCTTTTTAACGTCAATTTAACACGAACCCCTGGTCT
CCCacactttaaccctattcggcctagggggggggggctctttctgttcg
gaggtcaaactattggtaatagttcCTGAAATattagagcttttgccgtg
aaattttctgtaaattcctaacttttatttagcttcaaaataaaaaaaaa
tttgacacctaaatattttcacaccttgagcattNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNCTTttctaatacaaatttatttttgatgtcaaata
tatcttttaaaccgtaatttattgaatatttaggataaaataagcatttt
aaactcagggaaCTTTTTTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcca
aaaagacccactagatcaaaagttaaggggtggtacaggaaaagcccccc
ctagttctgaaccgcccctaaaagcctaggttgaatagggttaaaggttG
ATAATtagtgttttgtttttgattgaatTCTGAAAAAATGATGGGAATAA
ATAAGAGGTTGACAGCTCATTTAATACCTATTTCTGCCAGTCTCTGGATC
GTAAACTCTCCTGACAACACTTTGTTGTTTTTCGTATTCCTCTTTCGTCA
TCGGTACCAGCGTTCTGTAGTTAAGAAAACAATAAACTGTGACTTTTTTA
TTAATTGCAAAATCCATACCGACACTGATTTATCTCTTTAGATGACACAG
TAGTCTCCATAACCTTTATTCAAACATGGTTGCTTTATAAACATCAGGGa
agaaaatttcgcggttttttgacaaatccgcgaaatcaaATTCCACGAAA
CAAGAATATtctcttgatttaaaaattttggggcaaaataagccatattt
gaaacaaaaattccTCTTAACCGCAAAATTATATtccacgaaaatttctt
cccttaaggtagtggTGGTTGGAGAACCACTTTCAGATAAACTTAGAGCA
GAGATTATCGAAAACCCTGTAACCCACGTACCTTTTCTTTGGTGCTGCAG
AAGAACGCCCAGCATTGGAAACAACATTGTTCGCTGTTTCGTCGTTTCCC
TTGGGTGGTTTTGATGGATGACTTTTAGTTGTTTGATGATTGttcttcat
tttcgatttagctttcttttctttcttttccacCTAAATAAAGGAATCGA
AATTATCATAATACAGAAGAAATTCCATCACTATTAGGGCTTTTACTTTG
AATAGTCGAAATATTCtaataaaagtttttatatAAATCGCTATAAGAGG
AGCAGTCATTTAAGAACAGTCATATCAAAATCTCAGAAACTGAAGCAATC
AGGGTTAAAATCAGCCGACTATTAAATcgatgttttggaaattttttgtt
tcaatacTCGGGTATCAAAGGAAACGACACGGCGCAAGGCTATTGCAGAT
ATTGCTAAATTTCATTATGCCAAAAGAAAACaataccgtaaatcctcgaa
taagcacccccccttttagttaaaataatattataaccgccccgctcgaa
taagcacccccctttgaataagcgccccctccagggaggggcgcttattc
gaatttTGTTATAgattgaataagatattgagtagatacttgtctcttaa
aaagaaagaaagcgattaagaataaaatgatagaaattgtcaattggatt
tttccaatttttcgtttattcatccttttttgaaaaatcaaccctttgaa
acagttaagtttaagcagattccgaatttattgatatacgaatttcggaa
ataaaaaaataagcgccccgctcgaataagcactccgcttgaataagcgc
cccccttagagcctgaaaaattaaataagcgcacgggcgcttattcgagg
atttacggtgTTCATATAAAAAGCTAGAAATCAACTAGAAATTAAATTCG
ATATGTAGTTGTAAAAAGTATTAAAAGCCTACTTGTTTATGTTGGAGATA
TCAGAAGTATCTTgtttaaaggaaagaaattttcccggaatttaatttca
ctgttcacagctcaaaatttggaaatttcgcggttgagataattttttgt
ttcgaatatggcctattttgccctaaaaagaccaattttatagAGGTGAT
TTATTAAATCCTGAGAATACTCGTGTTTCACGGAATTTAGTTTCGCGGAT
TTATCAAAAAACCACGAAATGAAATTCCGCGATAATTTGTcccgtgaaaa
tttcttcccttaaggtatgagGATGATGATAGATAAAATCgaataaaatt
atttaaaaaacgtaaaatatgGACAAGCGGTAAAATATCCGATctctaac
acccctgtctcgatAACATGGTAAAAAATGTTCTGGCTAGTAAGTTGGGA
TGAGATAATACAGCGATAACGTTAACAATTGGATGTCATTCCCAGTGGAG
ATGATTCATTTTGCCCCTAAAATGGCCTCCTCCTAATGTTGTTTGATACA
AATACAGTGGAGTCCCCATAACTCAAGCACTGCgtggggaacacaaattt
gtttgaattaaggaaatttcgatttgaagtcagttggatgcctagatcaa
aagttatgctaaatttaagattttgggattttgcagggttttagctggat
tttatgatatgcctgcacaagatagtcataaaacctgatctggtcggagT
ATAATTGTataatttggtatacatgctgctaataggattatattaaaagt
caaaaactttcagagtgttaaaaacaaatttcagtgagctattagcaaaa
gagtgccagcctggtggaaaataccccccctgataaaaatagggttaagg
tttaaaaatcattgtaaagggaccataaaacttgttcgagtatTTGGCTA
CGTGTATCGCAGCATATTCTTCTCGAGGTTCTTCGCACGGATATGAGTTG
TGCTAATTTTTCTTATGTGTAGGGTGTTGTGTTACACGGTTTCTCATATA
CACGAGGCtgaactttaaaaaatgttggtttaCCGTCAGCTGACCGACTC
TTCTCTAAACTTGCCGACCTAAAAACTTTTATTGCTATTTCGACGAAgag
aattttttcttcttcaaaaattacaaaatgtagacgaaaattccatgaat
gaccaaaataaaaaaatttttccggccgacgACCCATCTaaaaaatctag
ggtcgggtgacagCAAACCAGGAATTTTAAGGTCTAGCCTGAACGAATCA
TGTTTTGGCTTCAATAACTTCTTCATCCTCACCAACATCCTCATCTTGGA
CAATAACAGCCTCGATTTCACAAGCAGCAGCCTCACTTTCATTCATACTA
GCACGTGGGTCACCTTTACATTCGAGTTCGTGTCTCTCCGTTCGTTTTCG
TTTAGCAAATCCCTTTCCACACTTTGAACAATGGAAAGGATAAAGTTTCA
AATGGACCATGTTCACGTGGTCTTTCAAACGATATGAAGCTGCAAAAGCT
TTTGAACAATGCTCGCAAACAAATGTCTTTCGTCCTTCTTCGTGTACAGC
CAAATGTCTTCTCAAGTGAGGCATATCACGACAAAATTTACGACAATAAG
AACATGTGTATTTTTCAATCATCTCTGGTTTCATTGTATTCATACGAGCC
GCAACTTTCGTCTTTGTTTCGCTAATTTCCTCAATAGTGATTTCTTCCAC
AGGCTCAGGCGCTCCCTCAAAGTCATTTACATCGACAGCCTCGTTCCCAG
GTTTTGCATCAGTATTTATTACGTCATTGTTTCCACAAACAGTATCATGC
TTTTCCCAACACAATTGTACGTCACGACATAATTTATGACAATAATTACA
CGTGCTTTTCTCAATTCGTTTCCATACTCTTTCCTCCATTAATTTGCTTT
TGATTTCATCTTGAGCCTCTTTCGATAATGTGCTGACCAAATCGAGCGTC
AGCAAACTctggaaaaataaaatacacCAGTTTCACAGATCAACCTACAC
TACAGCCAAC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00003556TCONS_00003556Clytia hemisphaericatranscript
TCONS_00003557TCONS_00003557Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000030supercontigsc0000030:333450..342159 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.88	4.24	1.72	1.28	2.17	1.09	2.81	1.69	1.93	0.67	0.94	0.36	0.6	0.63	0.54	1.14	0.58	0.89	0.51	1.23	0.47	0.77	3.55	2.32	0	0	0	0.68	2.37	2.71