XLOC_001820 (gene) - C. hemisphaerica

Overview
NameXLOC_001820
Unique NameXLOC_001820
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000026:293516..303297+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_001820 ID=XLOC_001820|Name=XLOC_001820|organism=Clytia hemisphaerica|type=gene|length=9782bp|location=Sequence derived from alignment at sc0000026:293516..303297+ (Clytia hemisphaerica)
CGATTACCAACAAGCGTAGCTTTGTTTGTCCACCTTTTCTCTTCAACTCA
CAGAAATATTTATTTGGTAGGTATGTATTATATATTTCTATGATCAAGAA
ATAGAAACAGTTGAAGAACTTCCTCTTTTGCATTTCAACATGACCTGTCC
TGGGTGGGGGTAGCCCAGAAACCTGTTTGCTGAGTTCTCAACTAGCTCAA
TCtttccagacccgatcaatcgaacttgtcgaaccaatcgaacaatcgaa
ctaatcgaactccatcgaacgattaaagttcgattaaaaaatttaatcga
actctaagattttttaaaagattgtgagtgttcgattaagttcNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNccaaattcggaatgtaaattgggaaa
ttacttccgataacggattacacacttttcctgtatccttttagcgccag
aggcagtttgttggggcgtagtattccgccactcggccgcgcgCGAAATC
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNggttcgattaatttttttaatcgaactttaatcgt
tcgatggagttcgattagttcgattgttcgattggttcgacaagttcgat
tgatcgggtctggatcTTTTGATTTCAGGTAGTTGAAAAATTAGCTTTGG
AAAATAAACGCAAAGATTTACACCATTAGCCCACATTATATTAGAAACAA
ACTCTTTCCAATCTAAATGCCGGTTATCCAAGGAAATAgtggaaagattc
cagaaaagtgacaagaataTTAGTGCGGAAATGGTATAGCTAAACTTAAA
AAGACGGTATTCAGCTACTgattaccgtgagtggtcctaaatccgacagc
cctgcctaaatctgatggggtctttcaaagatacaaattaaaataaaaac
tgtgacgaaacgaagataccaaagtgtcttAACTAAACTGAGAAattaca
ctgaaccaattgaaccaaataacaataattacttttatacaaaattgTCC
GAATTGTTAACGTTAAACAGgagcaacggattcagaataatagaggtaat
tatttttacaactcacacatTTTTGAtctcattaattgacatcttcaGAT
CTTGACTTGTttcaagagttcttgcaatagtttattgttcaacttggaga
gggaatgtttgtaaacatagaatttttttcaaaacagttatttggggggt
cggatttaggcagggctgtcggatttaggaccactcacggtatgttTGGT
TTTGAGAGACCTAGCACAGTCTGTGCTGTGCGAGTTTCTGTGGTTTTTAA
GTTTGTTTGGGCTGCGGGTTGGTTCCGGGCCCGGGGGGGNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGTaacgaataaaa
actggaaCGGCcctttaccaactgacggtatgttcGGCGAAAAAATTGCC
TTTTAGTATCGTACTgtaaagtgcagaaaaaaatcagtgaatttccaccc
ttacagtgcatttttcaaaagtccACCCTAACAGTGCAtctctgatattt
tgaaaaacatacccttaaccgccgcacatacccgttggtcaatttgcctg
actgccccccccccggggttccGGGTTTAATCCGGGGgaggggaccattc
aaaaagtatgtacgCTCTGACTAGACGGTATgataaattcgattatcgaa
gtaattgataatgatcgaagtaatcgaacgaccatttatcgattaacaat
cgaatttcgagtaccaaaatttcaaaaaaattgtgaggcttcaatcactt
tcttaacaacccttcgaAGACTCGATAACCGTTTGAGTACTTTGATTGAT
ATTGATTACTTTTGATAACTTTGacaacttcgataaccaattgattactt
tgataaccaattactatgatatatctttaagaaaaaccaaaaaaactgac
ctaaaaccaaagcacaaaaagaagacCCGCCATAAAGATTGACCTCCTTA
TTTCCCACCCATTTCGCCCGCCATTTTGTGTGCCTTCGCCCCTGGGTTTC
CTGAAGTAACTCATATCGCGTGttctgattggtcggagaaaacTAAAGTG
GTTTTCGTGTGttctgattggtcggagaaaacTAAAGTGGTTTTCGTGTG
ttctgattggtcggagaaaacGAAAATGGTTTTCGCGcgttctgattggt
cagagaaaacgaaagtggtttttgCGCGTGAATCACATGTTTTAATTGGC
CAAAATAAACTtggtttcaaattattttgacgCGCTGCTACTGGTAGGGT
GTAAACTGGAaccatgaaaaaatactttttttggattttcaaaattgtca
caattttttatcaaaatttatcatattgtaAGACTTCTTGCGCAATTTTT
AGGTCCATAAGTCAAGAATCCACTGTTTGCCCCAGGGGTATCTGATTTGC
GGTAGTAGCAAAAAGCGGCAAAAATGCCTAAATTTGGGCTTTTTTTGCCC
ATAaatagggtagatcgtcaaatggcaaagtaaaaaaattcaaattgtag
tattttttgtgaaaatataatctattgtaagacattttgtgCATATTTCA
ACCTCttaggtcaaaaatccagcattccccaggggggtctttgattcaca
ctaaagcgaaaaatagtaaaaatggcattttttgcccattttaaaactat
aaaaggccaggaaatggtcaaaatggtttctaaatggtatcttgtactaa
tattcaacacaaaaagacaaaataaccccagtgAGATcactcaatgtttc
aatttcaggttaaaaaggccgattttcttggattctgggtagcaaaatgc
atgaaagctgcatttttgaggacccacaacttttaaactttttaaggtac
acacttgaaattttcggcaatgaaacacttcagagaaagctccaggaaaa
atcaatcttgagttttcaaaaatttcctataaatccataatgacGCCCtc
gaaattgagttttcatgctaaatgtcaatatttcaagctaaaacttggtt
ttcttgggctaaaatctcaaaaatgatttcaaatggtgTTCTGAAATCTT
TGGATCTTGGAAGTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NTGCCATTattgtattgcatttcccactaaaatgcgatatttagagttaa
agtctaattttctcaggctagaatctcaaaaatggtttcaaatggtgtct
tGAAATTtgttggtgttgaaagtattctgaaaatacttcgggaagaatca
aaatggtttgggtcagaactTTGCCCTAGTctgccattttttttttttcc
ctttttgcctttttgcttttttgcctttttgctTTTACACAGAAAAtact
gaaaatatcagttcccccatatacccatataaatttctcaaatttcaacc
tgtcacaaacgtaaaattttgctgcaaaaggaatactagacaaaatagaa
cgaaaatgggttaatgtaaacaaacatgctTAGAAAAGCAGACTTAGAAc
tacaatgaaataaaaaattaaaatcctaaATAAaatccccccaccaaatt
tgcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCTCACCcatccaaaattg
gaaaattgtttcCTCCCCCCTCCCTTTATAAACCGATTATTTAAAAACTA
CTGaaccaattttaaaaagtaacaGCTCAATATTTCTCTGTCTTATGCCA
TTATATTCAAGTTCATGCTCAAAGGCGTtgccaaactaattttttttctt
aaccacTCGATATGTTACAGAAATAATTAATTCCGGGAAGTTTCATGGAA
AAGTTAAGAAATTATCTctgttattttttaaaaaacctcAGAGAAGTGTT
GAATATCTTGAGATTAAGTTAATGATTGCCACAGCAACATTATAAACTAG
GCTGGCTGTTCATAAATAAAAGGTCCAATTGATATTTCCGTGGCAAGTTT
GAGTTTGGATGGCTCTCctattatttagaatttttatgATGTAAAGTGTT
AAAGTGTTTAATAAGTgttatttaaaaatatatatttattaCTCGTTTTA
TTTCAGCTTGAATAATTATTAACAATAATTAAGTGGCAATCATGTTCTCA
GCTACCAGTTGTGATGACATTGACACCTTAATAACACAAGGCCAAAAGAA
ACAATGCAATTTTTCAAACTGGACAGAGCAATCAAGAGATTTTCTTCTCA
AACAAAAGACCTCAAGGATTTTGGAAACTCAAAAAAATCAAGGTATATAg
aaataagaataaaaaaattaagattcaTCAAGGCTCAAATAAGAGCATAG
TCAGGNataataataaaaaaattaagattcaTCAAGGCTCAAATAAGAGC
ATAGTCAGGAAAGTGTCTTTTGCGTCCTTTTATCTCTATAATTTGTTATT
GTTCTTTGAAAAGATAAATTTTGCATACTATTCGCTAATTacgaaaaata
ttataaaatagaTGAAAATCTGTCCCAAAAATCCTGAAATCATAACTTTT
TGGCCCACTTAATTTTTCCATTTCCTGTTTGATATTACAATCGACAAAAC
TTTTACCATTTCACTTTTTTCACAGAGGACATCAAACAGATACAAGAAGA
GACCgaagaatttatcaaaatatccaaaataacTGAATGTAAGTTTATTG
TTTTATTTCGAACATTATTGAGTAGAtgttacaaaaaaatgttttgtcaa
ACTTGTCAAGATTGCCTTTTGGCTAGTTGAAATCCATACTCTTTAAAGGA
AGGAGCTATATACACTCAGGGGAATTCTGATAAGAGAACCTGTTTACACT
TACATCTTCAATCAAAGTCACAATTAAAAGTTATTAGGAAAACATTCCCA
GGGTCCTTTTCTGTGACGTTGGGCTTTCACtttgttgacatttgaaaact
tggcaTCAAAATCTGTCATCCCAGATGGCCAAAGTCTGATGCTATTCTAG
CTATAATAGTTTTCAATTGCTATAATTTCCTTCCCTTGATTAGTGGCTCT
ATTACATGttagaaaatacaaaatagcCAGTcagttatttgaaaaaaatt
tcattgaaattatttcttattttagTTTCAAATGGTCAAGCTAATGATAT
CAAATGTTTATCTGAAGAAGTAGTTAAACTGAAAGCCCAATCTTGGCAGA
AGAACTTGCTAAGTAAAACTAAAGCAGAAAAACTTGAGGAGAACCAAAAC
ACAGTCAAACAGAAATCAGAAGGTTTGCAACTATTTTTGTATTTGGTACT
CTTCCCTGCAATATATATAGTGCTGACTatcagccaattcgattgacttc
aaaatatgccatttttgccctgattgccaattattttgcattcgattgac
aaaaatttggcaaatgtggcaaaatttgNGAAGAATGTTGCAAAACAcct
tgaaaaacttgaaaaaggcTTAAGTTTTTTTGAAGAACACCTTGGACTGA
AGGTGTTGTCAAATCCTGGTAAgggtttgattgattgattgattgacacT
TTCTACAAggaattttattggtttgagCTGATTTGAGGCCATTTTGCAAA
AGCAGGTGTGCTGAGTCATGGTGGTATGGTTTATGGTACTCAATCAAAAT
GAACCTTGGTCTTTCTTAAATTGACTTGGTGATATAATAGTACCCTCTTT
AAGAAATTAGGAAGAAAATTGCCGAGACCGTTGGAGTACCTGAGAATACC
ATCAAGCCCTTTACCCGATgcctaaaataataaaaagtgcGTACAACTAT
TGGAGTTCCAGTTCATACCATTTCTTCTTTTAGATGATCATCTGACATTC
AAATTTACAAAGATCGACGAAATGAATCAAGATAAAGAATTTTCCTTTAA
TCTGGCTGTCGAAGGCTCCCCTGGAAAGTACACAGGTTTGCTTGTAATTC
TTTTCATTATATGCacagttttcttataagaatgcTAAGTctcagttttt
tataagaaatctttttataagaattataaGAAGTCTCAAGATTTTGTTCA
atcttttcttcgtttttatttttattttttttcgtcttttttttcgtAGC
TAGAGACCAAACTAaccaataattttcaaaattNAattttttcgtttgtt
ttttcGTAGCTAGAGACCAAACTAaccaataattttcaaaattctttcct
aagaatattttgaggctcaaaatggaaaaatctcTTATGATATGAAAACC
CTGAACCTAGATCAGGACTTTAAAATGGTctctttcgattgttttaagAG
GTATTCTGCCAGTCAGCATCTATGAACTGACAGAACATGGGAAGAAGTGG
AGATTTGACCGTGAATTTATTGACCTACAATTTCTTTTAGACAAGCTGGT
ATCAATCTACaacttttcattgttttttcttataGTTTCTGACTATTCTG
TCTCGATTCCTGACCTCGAAGTCAGCGTTCAAGAATTGAACGAGGGAAAC
GACTTAAAGAAGTTCATCTGTTTTATGAGAAACTCCTTCAAAAAATCCAC
CACAGTGCAACAATAAAAAGGTATACAATTTTTTATGACACAAATCATTG
TTTATGGGGTTGTGGGTGAAAATGATCTAGCCTTGGTTATCAGGAGCATA
GTTGCCAGATTTAGAACGTTATCCAATGTGACAAGACGTGAACAACTCAA
GAAATGGAAAAATGTTTTGCCAACACCTGAAGTTGTGTTACGTTGCAATG
ACCTTTACTAGGTAAAAAATACCTAACGGCGCACAGTGACAATTCGTGAT
GGACTCATTTTGAGCGATTCGGGACATTGTCCTATTGAagcttttttatt
caaatgCAACGAGGATGAAGtcgctaccttaattcaaaaggggcctaagt
caaGGTACCCCCCAGTTCAAAAGGGGCCCaagtccatttttatgaaattt
gagatctttagtttttttcaaCCTCTGGCTCATTTGCTCTCTTTTGATGT
ACATAACAAGtagtttttaaagttaaaaaggttCAAAACTTCATACTGAA
GCTCTGATAAAAGTgatgtttaattcaaaagaggcctaagtccatcatct
ttttacaattaagggcctaagtccatcaactttttacaataaaaaNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNCAAAATAAGTTTGTTAAGTTTTGAAGAGGCCTAAGTCCA
ATTGAATTGCAaatgggcctaagtccatgcatcctaaaaagtttaattga
gtttttctttatttattttctttatcaatCATATTTACTGAGATTGTCAA
AAATAATGATACAAAAATACATTCCTTTCAAACGAATGCCTTTTCATTGG
AAAAACAACTTATAGCTAtggctttcagaaaacatttgcttcaaagcttt
accatcaaaaatggtttcagaatcaaggaaaaactttaattgcaattttc
tcaaaatgacccaaatggacttaggccccttttgaattaaggctcacagg
acttaggccccttttgaattaaggtagcgaaGTGATGATGTGACGATGTT
GATTGGTCTTTTTTTTCGAATGCGAAATTTGGTAACCAAACTATAAAAGC
ATGTCAGAGATTATGTTTGAAAATGTGTTTTGATTTGTTCGTCGAAGAAG
TGTTTGGAAAGAGGACTAGAAAACAgttaacaacaaaaaacaaaaaaaca
ttttatcattgatggataaaatttgattcaataattattttttggttATA
GATAAAAAAGAATTGCCCCTTTTTACAGTTTTCTTTCGGTAATCCTATTA
TCAAGATTACAACGCGGCTTTTTGGCTGCTATCTTTTGCGCAAACACCAC
TTGTTTTGCTCTAAGGGTGCTTTTTCATATAATTTGTGAAAGTAAATCCT
CACGAAAGTTTCCCGgagttttatcttcaaaattaATTCGATTAATCCTT
ATAAAGTTACTATTTTATTTAGTAGCACATTGTAACGTAGACACTGATTT
CTTAATAATATTTTGAATTGTAGATAGACAATGGCTGTAACACTATGATC
GactaaatgaaataataaaaccTTTCCCTTTAATTAATCAATTTTAGTGT
CTTGCTGAAGTTACTCCATCTACTGTCGTGAA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00003268TCONS_00003268Clytia hemisphaericatranscript
TCONS_00003269TCONS_00003269Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00003269-proteinTCONS_00003269-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000026supercontigsc0000026:293516..303297 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
28.55	29.27	23.86	25.64	152.56	157.45	146.44	207.05	107.43	79.82	62.47	70.79	39.15	36.86	3.97	4.32	9.67	9.09	2.03	2.87	7.34	6.02	21.74	17.86	107.8	179.6	8.52	3.25	7.96	8.34