XLOC_000824 (gene) - C. hemisphaerica

Overview
NameXLOC_000824
Unique NameXLOC_000824
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000011:294491..300458+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_000824 ID=XLOC_000824|Name=XLOC_000824|organism=Clytia hemisphaerica|type=gene|length=5968bp|location=Sequence derived from alignment at sc0000011:294491..300458+ (Clytia hemisphaerica)
AACAAAGCCATGAAATGACAATTAATAAGTCTTTTTGTGGtctaaaatca acaaaaattctATAATGATCgctaaaaataattacttttaaaatgaaaga agacAGGCTAAATAGAAGTATTTTGGTGTGTTTTCGCACGGATTCGcaaa ctcaaaacaaaaattcaagatggcggcgaaTCAACAACCAATTTTTATAT CAGGTACCATTCCTCAAGGGGCTCCTCACCCTCAGCAAATTCCACATCAA CAGCCTGGTGTTTATCAGACCCATCCTAACATCCACCAGCAACATGTGAA GCCTCCAGAACAACAGATGCAGCAACCACCACCTCAGCAACAGCCTCCTC ctcaacagcaacaacaacagcaacaaaatgTTGTCGAATCAGATCCTCTT GCAAAATATGGAAATTTGCTTTCTATCCTGAAAGAGTCCATCAATGTAAG AACTTTTCTTGTGATTATCTTGTGATTATCTTGAGGGCTGATAGGGAAAG TACCAGTGGAGTTTGAAACATGGAACGGCCCTgtgacgaccctcgacatg gcccgagaattctcgggcctcttcgggccatgttcgggccgagagaccct atcaattcttttggcccgaacatgacccgaaNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTATGTTTCAT AATCAAAGAATTTAATGTAACGCAAAGTTCATGGGAAATGATGTGTAAGT TGTTTGATAAAGATTAACTAAATAAATACATAGTCATCTCTGTCGAGGGT CGTGCCCTGTGTGAGAGGACAGAGGTCATCGGTCTGGAAGGaccaggacc ctgccgacgcaccggactgtccggtgtattttttctggtggcaaaaagta tcctttcgctacaccggacgcaataagtccggtgtcagtctgGTGTTGCA ttcagggaattttggacgccggacattgtcatttatgaaacaaaaaatta agaaacacctgACACCaaactggtcatgtccggtgttttgattgtctggt gggaaaaaatatccttctccgacaccggacatccgacttccttaactcct tggtaaaaaaattatcattttacaccggactttcatGTGTCCGGTGTTTT TATCTCCGGAAAGTTCCCAAGCTCTTCCGGAGCAAGTGATTCTTAACACA GCTCCAGAGTTCCGGTGCAGATTAATTGCTGAAAATCGTGCTTCGGAACA CCGAAAGTGCTCCGGAATCTTCCGGTATTTCGGAGCACGAGAAAAACGTC ACTTTTTGCTCCGGACGTTTCCGGAGCGCCAGGAGGATCCTGGTCTGGAC ATGATGATGATATAAAACTGTCACTGGTGTTCCCCTCAGGCAAACTCTTC GATTCTATAGAGGTCACGAAATTGCTGAGTACAgatgtcaaataaaaaat ggctgcCAAGCAAACACtgacaaaagcaaaaaatcaggaGTTTTCCATCA CCTACTACTACAGCATCCAAACAAAAGAGAGATATGAGGACCCTCCCGGC ACTCCAGAATTTTCCGAAGTTTTCCGAAGCAgctaaaaaacactattttt ctctttaaaaagtTCCAGAGATCTTCCGGTGCTTCCCGGAGCAAGTGACT TTTAACACGTTCTAAAACACCGTTTAAACAAGGTTACATAAAAGATATTG ATATGATGGCTCagccattaatgaaattgaatttgtcacattatATTTGA AAGCATTACTGGTCGAAAtgtggaaaaaattaaaaagcgaGAGGTTTCAC TTCCATGAGTCTGCTGATTCTTTAAACTGCGTGGGTGCGCAGTTAGTTGT CACATGATTAGCACAGCGAACGCTACTGTAATTATATCGCGGATATCGGC ATCTTGCTCCGAAACACTGTAAGTGCTCCTGAATCTTCCGGTTCCAGAGC ACAAAAAAACGGCTTTTTTTGCTCCGGACGACTtttccggagcgccggga gggtcctgaGAAATGCTGTAAAATActgtgaagtcaggtaacttgcatca gtggagggaaacttgcatagccatacCACGATACCAGGCATAGTCAACCG AATCCTATCAAACCGATTTTCGGAATCaaaccatcaaatttcattgAACG GAATCAAACAATAGGTGTTCTATTACAGAACCTGATCAaacagtaatcga actttaccggaaaatcttcagttcgattaaagtttgattacttatcgcag ttcgattaagttcaatcattgtttttgtagctcaaatggttccagTTTTG CCAGCAGTTCTAGCCTGAACAATCCCCAACAATCATTGGATTAACAGAAA AGACTCAAAGAGTTCTTCATGTGTGTCGAGAATGATTTGTGAACGAAAAC CGTAAATCGAACacatcaaacatcaatcgaactttaCCAGAATTTCTCAG TTCGATGACTGTTTGAGTTGGTTTGgtaatcgaacacctatcgtacgatt acgttcgatttagttcggtaatcgaacaattcgattgacatcgcctggaa aataaaaagtaaacaaaccttgaaccttttgtctgtcaaaataaagaaaa tattctagTATTTTTTGTATAcagaaataaatccattttctaCCGAACCT ACAACAACCACCAGCAAGGTTTCAACGCTGCGACATTACTGGCAAtgaat tctgacttaaaaaTTTTGGTCCAGTTCCCTGGAAAGGGTATAATTTCACT TCCAaatgaattatttttacaaTAACATTTGTCTTCTCACAAATCTAAAA TTATAGCTTATAAAACCAACACGggggttaattttttttacaacaaaccg tcaaatcaaactttataaagtcagaaaaatcagggaaatattttttctga aaatcaggaAATCAGGGAAATTTTTATGGCAAAAACCGGAAAATTAGaga catttaaaaaaacgaAGAAATGCATGAGAAATTAAACTGTTTAATTGCAC GAGACAATGTGGAAATGCATGAGTTGGGCGCACAGTTTCGACTAAAACTT CTATATCAAGATTACTAGATTTGGAGTGAATTTTTCATTCgacagtggtt tcattttcgattgcAATCCAAAATCTTAGCAACGGGCTGCTCGCTTCACC CATACCACCAATCAGGGTTACTTTCATAAGTGAGGGGTAAACTCTCATCA CCTCCAATCAGCAGACTTCACTGATCAGCACTGATCTGCAATTTGTGTAT TTAGCTAGAGTGAAAACAAAATATTGCCATCAacaagaaatgaaaaagtt cTGATTAAGATTTTACCTAAAAGTACATTTTATGTGAATGTCCAAATTTC CTGCCTTCGTGTTTTTACACTGGGATtgtttgaaaattacaaaacgTGCT AAATGTTTGGAAAGCTTTATCATATTTCTTACttctttttttagaatttg atCACTCATACAATTTACATTTTACAAAATACAACTTCTGGACAGTGTAG GTGAGTCAGTTTGTTAATTGATACTCTTTGAAGATCTGCTGAATCCCTTT TTATCAGCAGTACTGCAGCTATTCCAGATAAAGAGGTACACGATGTCATA ATAAGAACCCTCTTTTGACTGGATACTACCAGTAGAACCtattttaggcg tacaaactttcgcgatcaaaaactttcgcgatttttgcggattttggcct ttttcgtgaaagtttatgctcgcgaggttttctttaaaaaattgaatatc tataaaactttgaaatcgtaataaatataaaattttcagcNACAGCTATT CCACATAAAGAGGTACACGATGTCATAATAAGAACCCTTTTTTGACTGGA AACCCCCAGTAGAACCtattttaggcgtacaaactttcgcgatcaaaaac tttcgcgatttttgcggattttggcctttttcgcgaaagttttatGCTCG CGAGAttatcttaaaaaaatttaatatctatACTATACTTATACTGAAAA TCTTTGCAACCAAAGATATATAAAAATAAACTGAaccttctttctttttt atactcAGACAAAGTGACATTCAGAATTTGAACAAATGTATTGAAGATTT CAACAATATCAACGATCAAGTATATCACTGGCTGGTAAggttttttcttt acaaaatcTTCATTCATATTGATTAAAAACCTGTACACAGTTTTTTATGT AAGAATTTAATAATTTATATAGAGTGAGCCTCGcgattcttaaaattttg aaagaaggaAAGGCGAAGTATATTTTCCCTTTAAAGCATCGCGAAAGGTG AAAGGAAAATGTCGACATACTGTTACAACTGATCAACTATAAGTTATGAA GTTTCCGCTCTATTGCTCTTGCGATATGCTCGCCGTTAAAGAATGTTGCC ATGTCATCCAAATTCTGTCAACTAACATTTGACGATCCCTTTCTTTTTTT GCGTAATGTTGACAAATGTCTTATTCATTTCCAGACGCTAGCCGATTCAA CAGTCAGACAATatttgattggatcgaaatTCTCCAGCTTAACATCTTTG ACAACATCGTTAAGTATGCCACAAGCACAACAAAACCAGCAAAATAACAA TTCTACTGACCAACCAAAAGACGTTCTGTTTTATTCACAGTATCTTTCTA ACGCTAAACGACACGTTGCAGCTACTAAAGAGCTGAGAAGCATGCTGTCT AATTTTGCAGATGATTTATGTAAGGATGAGACGGGTTGATAATCATCGTA GTAAATACACttaatttggagaaaaaaatcgtgGAGGATCCATATACTAG TCGTATGAATAGAGACTTGCTGACTGNTGAAAAAATTCGTGGAGGATCCA TATACTTGTCGTATGTGAGAGACTTGCTGACTGACCCAAATGATATTTGG TAAGCTGTGTTGGGAAGGCTCTTTGGAAAAACACTGATGTGAAATGTTCG TTGAAAGATAGCATGTTATTCAGAGATTGGAAAACAGGTTTAACAAGTTA TTTCTTTGTTGAAGGGGTACATTATTAAGAAGCTGAGAATACGTTATAAA CAGCTTTAGATAATTTACAATGACATCATGACTTGGACTTAAGCAATATT AGCCATGATGTAAATTAAAAGATATGGTTTGATTTTGGTATAATTTTTAT ATTGTTTTGTATCTTTATCGGTGTGGACAATAGAAACCGtaaaataaaca ataattaACTTAACAATGAataattttgataaatgcaATCCTCAAATCgt aaattgatatttttgataaccaagtacacgttttttttttttttaagaaa cacacttttaagaaacatgaggctcagaatgcctaaaaactaagaaacat ctaagaaacatgctgagg
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00001577TCONS_00001577Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00001577-proteinTCONS_00001577-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000011supercontigsc0000011:294491..300458 +
Orthologs
The following orthologs are found for this feature:
Ortholog NameDescriptionOrganism
MED29mediator of RNA polymerase II transcription subunit 29 Homo Sapiens
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
29.08 27.43 18.02 14.96 32.5 21.78 17.61 18.29 12.39 12.56 10.06 9.88 7.5 6.83 6.02 6.64 9.46 9.76 5.94 6.56 11.11 11.11 29.08 23.43 9.52 11.87 6.61 6.56 16.66 19