XLOC_000446 (gene) - C. hemisphaerica

Overview
NameXLOC_000446
Unique NameXLOC_000446
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000005:699524..709241+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_000446 ID=XLOC_000446|Name=XLOC_000446|organism=Clytia hemisphaerica|type=gene|length=9718bp|location=Sequence derived from alignment at sc0000005:699524..709241+ (Clytia hemisphaerica)
TTGGTCTTGGATTTATCCTTTCCGAACCAGGACAGTTATGCGATGAATAC
TGTGGTACACCAGGTTACACAGCCCCAGAAGTTGACCGTGGCTATCAGCT
TTTAAGTTACGATCCGTATTGTGGCTTTAAAGCTGATATTTACAGTCTGt
aagttgatttttttatctCAATTATTTTCACAACTTCTGAAAAACTTCGA
ACTTTAACTAACAACGCCGTCCTATTATCCACTGAGTCCTATGTGTACTT
AAAGATTTCTCGTTGGATGGTTTGCAGGCTCGATTTCTCATGTTAGTTGA
ACTCCTCGAGTGGCACAAAAAAGAACGCTCGACTAACTTTTGTAACAAGA
CATCTTGAAGGCACCAAGGCAAAATGGTGTACAGGGACATTAAAGTCCTG
AGTCCCTCATTGATACTCTTAAACTAATgtctattttttttcttgtcGGT
AGGTCCTATCTGCACTCTGTATCATCTAAtgatttcctttttcttttact
ttttagtGGAGTCATCTTGTACAGGCTATTAACTGGAAAATATCCACAAA
AAACATGGTTTAAAGATTCTTCTTTATCTGCAGGTAGGATTTTTGTCCTC
GACTTTGTTCTAGTTGAATTTTTATGTAAATTTACATCTTCTCAACAAAA
GTCGTTGATCAGGCACGATTACCCTCAAATCAAACACTGCCAAAATCTAT
TTACAGACCCTTTTGTTCGGTTTCCtctaaataaaacaattttgcattCT
TCACTTCAGAATGCAGAGACCTCTTGCTTTCTATGTTGAAATATGAACCA
CAACATCGTCCATCAATCAACGAAATTGCCAACCACCCTTGGTTTGCATC
TCAAGACGAAGAGGCTAACAAAGAAAGTCAAGAGAACGAAAAGCTTCTAA
TGATCAACAAACTTGTTGGAAAGCTTGATGGTCTAAACgcaaacaaaaaa
caacttgaCAAAGCGTTGGTCCtagccaaaaacaaaaacaagattttgaa
aCAGCAACTCGGCATTGCACAAAAGGTAtattaaagtttttcttttaaat
taagTAGATAACGTTTGCGAACTCGTCAGTgaattacaagctttttcaca
tcgAGTTGACAGGAACGTGGAGCAATATTGATCACAAAGAagggaagaaa
tattttttttgtttattcagcacaaaTTGAACACAATATAACTATAGGAG
ACACCTGCCTCATATAAAACAAGTGTCTAaaatgaaacgggaacacttct
gtaaaattaaaacctttaagaagTATATTTTATTGAAGCTTAATTTTGTC
AAGTAAGCCATGGTCACCTATCGTTTCTTCTCGTTGGGCCGATGAAACGA
TAACTCGGATACTATGCTAAATTCAAAGGGGAGGCAGAGCTAATATATAT
ATTTCTTGCTCCTTTCTGGCTGATTGAAAATAATTGTATTATTCTTTTGG
TCTTCATTTTAGGATCATATCCTTCAACACAACGGAAAATCTATCTTGAA
ACCAAACACGGTAAGCATTATCttcataaaaataattcgccTTTGCCTCG
CTGACCcaaggagaatttttttgacACGTAAGAATGAAAAGAAGGAGGTG
AATGAGAAATAGTTTTTAATCGTGTTCAagttaaaatttgttttaacTCG
AGTTTGGGTGAGAGTTAGAAATCTTGTTCCTGCTtgattcttttatattt
tcaacaaaatattcTAAATGCAGTATCAAACAGACCAGTAAACCAAGTTG
GTTGCTGACTCGAGTTCGCAATGatggtaaatatttttatttattttctg
taGGTTCCAATCAACAACATCAAAGTCATCAAAGATGAAAAACGTGTTAT
GATTGAaaacttgattaaaaaaatttacaacatCAAGAATGTCATCAAGA
ACAAAAAACGAATGCTGGTTGAGTTAAAGAACGAAAATACCAAACTTGCG
CAAGAcgctgaaaaaatcacatttgtTGCTAACAGCTCACGATTTCCTAA
TGGACACCATTTCCAGCCCCAAGAATTCTGGGAATGAatcaatcaaaaac
atttttgttagTTTTGTAAATAGTATATAATTAAAAGAACTTTATAAAAT
CATggtattaaaaatcaaaatcaaatacaAACAAAACTCTTTAAAACCCC
AAGAANATAATCAAAAGAACTTTATAAAATCATggtattaaaaatcaaaa
tcaaatacaAACAAAACTCTTTAAAAACCCAAGAACAATAATGCCGTGTT
TTTACTTCCCTCGTTCTAGCACATGATAAAGCATTACCCGAAGACGTAGA
ACCGATATTAATAAAATATGATGAAAAACGATAAAGATAACACCTTTTTG
CATCACGCCAACCGAAACATTTTGCGTGGGTTCTTCTTCGTATCGTAAAA
AGTAAACacctcttacaaagtaaacatgctcaaaataagaaaaatgccAA
ACCTATTCTGCACCTTAACGCGTTTTACTCGATAACACCACTGCTTTTAG
TTTGAAAAGATCGGGATTAGTAGAATCCCTCTAACGGGCACCACAGGTAA
TTTTTTCACTATCGGATAAAATATTCACGATACTAGAAGGTTGAACTTAA
CCAAGTGGAGAATATTAAATCGAACTAtagttcaaaattttctctttttg
tccAAACCGATCGGGGCAGTTTAATCTGCGCATTGAACTTCTAGACAGAA
AATCTTCATAAAAAGTAGTTGATTAGGATCGGGCTGTCCAGCAAACCAAT
CAATTATCTAACAGACCAATTAATGAGCCCCCCTGCGGACCTTCAGTTTa
cacaatcacgcaattttttttccaaattcacgcattcacgcaatgttttt
tcgcaattaccacaatttttgtttgcgcaaagtttttcaattcaagcatt
cacgcaattattttttaattttcttgcattcgcgcaagtgaaaaagccca
ttcacgaaTTCAAGCAAACTGCCTGGGGTTCCCAATAACCAACGGATCTC
ATATCAGAAATTATTGTATTCAGAAAACTTCACACGCCATTTTCAGATAC
TGTGGAATTGCCTTTTCTACTGAATTTACTCTGAGAATTCGTGATAATCT
AAGTACCTTAAGTTTCATCATAGTGTTTATTATTTAATGGGTCACTAAAA
ACGTACAAAAATGGTATAGATAATTGATTTCGGAAAATTGAAGTGACTCA
TTGAGAGAATTATTGAcgtaaaacaaaacaaaaaattgtataaaatGACT
ATTTTCTGCAGAAAAAAAGGTTATCGTTTCGACGCACCTTTGAGAATAGA
CGCTCGAATGACTATTCTcgttatcgaccgccggaggcggtttctttcat
agtggtacgctaatctcattttgccttggctcattactttgtctaccatt
tactttcggtttttttaactagattacccaggtgtttctcttttttttcc
ctaaatttcttttattcggaattgaaaaatcgagacatgaaaaatgacta
tattgtaatttgttttcaatgaataatctaaaatgtactggagatgacat
gtttaTCTGGTATATGACATGtaagcgttaataatgtgcgcgcgctcttt
cgcgagcgtgatgcgtgattgcgtgatggaaggcggtcgtttcagtgtgg
tttacatccacactgtgacNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
GAAAtcacttcaattttatctcagcaaccaaggtcagtccacatgatatc
atgtgattagatcatgattgaaaaattaaccaattttcgttctattttgt
ttagtattccttttgcagcaaaattttacgtttttgtcaggttgaaattt
gagaaatttatacgggtatatggggggggaaatgatattttcagaatttt
ctgggggaaagcaaaaaagaggggggaaactaaaaaactgaaaaatcata
gggggaaaaaaagtgggagatttaaaaaaatcaagaatttggtggggggg
aCAGACCTGGAAGACACTATGTGAATATCATGATGACTATTGAAGCACAA
GAGTACTTACATTATGGATTTGTTCTGGGACGGAGTCTTGGTGAGGGAGG
CTTCGGACAAGTGAAACAGGCGTCATACGCTAGATTCGACTGCCCGAATG
ACTCTCTTGCCAAAAAGCTCCGTTCCATGGGACACAGCGACCAAGTAAGt
tattttgtttcttcttctttaaATACTACAGCTTTTTAATGTCAGTTTTA
ATGTCAGCTTCGACATCTCTACGgtagaaaatatttgaatatgGGTTTTT
TGGATAGTCTGTAACATTCTGATTGCTACATTGGTATTCAAACATTTAAT
GATCACTTTCAAGGCATAAAATCTATGAGTCAGGAAAATGATAGATATGA
AAGCATCGCTTGAATTGCAAGAATGGTTTCTTGATTCATAAAAATGACTT
TGTCGGCGGGATGGGGGAAATTTTCCTTGAAGAACtttccaaaatgaaaa
agaaatttgtttcATAAGAAAGGTACATTAATTAAAACGAATTctgatat
tttttaattacaatAATTGATCAAACGGCCAAATGATTAAGTTAAGTCCT
CATAAATCGAGCATCGACCGATTGACTCATGACTGATTCGAAAAAAGAAA
TCTCCCTCAATTTTACTTTCGCAAATAAGGCCCGAATTCACAGAAATCGG
GGAAGATTGTGTTTCTGAATGTTCCTACATAATTTGGTGCGGTGCGCAGT
TTCTTTAAAGGGCTatttagactacacaatatattggctTACAATAAATG
TACGTTTCTTCTTCTTTAAATACTACGGCTTTATAATGTCAGTTTTAATG
TCAGGTGCGACATCTCTGAGGTAGAAAGGGGATTTTTGAATATAGTCTGT
AACATTTTGATTGCCACATTGGTATTCAGACATTTAATGATCGCTTTCAA
GGCATAAAAACTGTAAGTCAAGAAAATGATAGATATGAAAGCATCGCTTG
AATTGCAAGAATGGTTTCTTGATTCATAAAAATGACTTTGTCGGCGGGAT
AGGGGAAATTTTCCTTGAAGAACtttccaaaatgaaaaagaaatttgttt
cATAAGAAAGGtacagtaattaaaacaaattttttaattacaatAATTGA
TCAAACGGCCAAATGATTAAGTTAAGTCCTCATAAATCGAGCATCGACCG
ATTGACTCATGACTGATTCGAAAAGAGAAATCTCCCTCAATTTTACTTTC
GCAAATAAGGCCCAAATTCACAAAAATCGGGAGAGATTCTATTTTCGAAT
GTGCCTACATAATTTACATGTATACATTGAGTGAATATGAATACCTCGAA
TATTGAAAGAGTATTGGTTTTGAGACTATAAAGGTACTGTTTGGGGGGGG
GGAATTCAGTCTAAAAAAGGGTTTGTGTGGATCTTGCAGGTCGGTGCGCA
GTTCCTCTAAAGGGCTatttagactacacaatatattggcttacaatatt
cgacaatatggtttgttGAACTTAATGTACGAACTAAACAACAGTAACTC
TATTATAACAATGAGTTTTCTTTCTGTAGACAATCCCCTCTATTTCAGAG
GGAGGGGTACGTTAGGTCACGATCATTTTTGACTGGATACCGCTAGTAGC
ACCCTCGGATTGAACCTATTGTTGAAATTTCCCAAGCGATTTTCAGGAGT
GGTCTTTAGACGCCTTTTTAAGGGCCAGTAAACGACTTAATAAACAATGA
CTATTAATAGCGGACTTTTTGCAGCGTCCGTTTTAACAATTGGACGGCTG
GTCTCAAACCGGACTCGAATAACCGGTCGACATCCTTttctaaaaaacaa
ttttgttgaTATACTCGTTATTAAAAAACACAATCGAACCAGGAAATGGA
AAGCAGCCAGGGTCTGTGGAAATCAAAATTTGCTCTGAAGGCCGATCTAA
ATACCAGTCTGGTCCGATTAGGAGTCAAATTATGAAAATCGAACTTTTAA
CTTAAACTCAAACTTATGCAACTATATTGCAAACGCATTTGCAATATATT
GTGAGCGTCATATGGTACTCAAATTGCCTGATATTTAAGCAAATTACAGT
CGGGACCACTACATGAaaaaggcaactattgccttaacaggaaatatttt
ccaaacgagaaggtggaaaacttcccgaaatggctagactttccaaatcg
ggaagttcaacagtttcccgatcgggaaagtgTCCTCTGAGCACTCTGGA
AATGCACGTGGGAAGTTTAAAACTTGTCCCTCTTGCAAAGGagagaaaat
aaataatattcacCAGATAGTTAAGAAATCCAACGGGTATTCGCTTCTTA
ATTCTTCTTACTTCATTCCCAATTAAAAAATTCCCTATTTGGAAACTCGA
tcaagaaacaaaaatctgctttgtttacagAAATTCTGGGacgatgaaaa
gttcttgaccaaaacgggaaacagaaaagtaatgaaattttcaatctgga
aacagtttccttttcaggttattttcaccttcccgttggggaaatatttc
ccattaaggcaatagttgccttttCCGTGTAATGGTACCGACAGAAACTT
GATTaataaaaattgacgtcattgaaaatattttttgacgtcaaataaaa
tacTTGCAGATaactgttttcaaaaaacttttatgTTTCATTCTTCGAAC
CCACCTTCTTGCCTAGACTTGAAGGATTTGTATCTGCTCATTTTCGAGAA
GATAGTtgaataaaattgtaaaaatttcataaattgaaaCGTATGAATCT
TCAATATGGTAGCTCTTACTATAGTAGAAGATTGTCTTTTGAATGGATTT
GTTCTAGGACGGAGCCTAGGCGAGGGAGGCTTTGGCATGGTTAAACAAGC
AAAATACGCTAAGTTTGATCTCCCAAACGATCCTCTCGCCAAAAGGCTCC
GATCCTTAGGACACAGCGACCAAGTAAGTTGTACTGCGGCTTATTCCTGa
atgtttggaaattttgtttccacaattaatttttgaattgattttcaaaa
aaagtcttTATTTTGTTGACGAGCTCATTCTCTATAAGAAATCATCAAAG
AGAAAAACTGAAACCACAAACCTACTTTCGGCATAGGGATGGATGATGGT
ATGAAAtcaaaattgctgaaaatataaTACTTTTCTCTCTTTGTCAATTG
CAGGTCGCCATTAAGATCATGCCGAAGTCTATCGGAATGGTTACAATCAA
AACCGAACTGAATTGCATGATCAGCCTTTCAGGTTCTTCCAACGTTGTAA
GTATTTCCtatttcgaataaaaatgtttcaaCGGAATAGAAGGAAGTTTT
GGAGCATCTTGGGGGAAGGGTGGGGGTTATATATGTAAACAGAAATGAGC
AGCACCACGACCATAACATGAAAAATGCCTACACAACACCtaaattatga
atttttataGTTTCAATACTATATTACgaagttccaatttttttggaaaa
ttataaGGAATTCAAAACATCTTTTTACAGGTTCAACTCCTCAAGTTCTT
CCAAGGAAAAGAACACGTATATTTTGTTATGGAGTTTTGCAGCGTTGGAG
ACCTGGCACATTTCgtgtttaaaaacaaaaatattgacacgATGAAATTC
TTTAAAGAGATTGTTCTTGGTGTGCAGCAATGCCACCAAAAAAACATTGC
TCATCGGTAAGATCTTTTTGTTTCAATACAAATTTGTTTTGCTAGGCGAA
ATGAGCACCAGGTTTATATAAGTAGAAAGGTTACATATAGACCAGCCCAA
GCCCTTGGGtaagaatttttgaaatcatatTGAAGATAAGAATTccataa
aaatttgttgaaaatcgagaaacattttgaaaaattttgaaaagcctTCC
GATGGTATTTATAACGTCGAAGACATTTTCCTCAAACATACTCGTCACCT
AACAAATCTAGTTATGTACCCCCATGTTAGGGAAGCTCTATACTTTTTAC
AACcaatatataaatatatatcttcttttcacttaaaaaaatttccttat
ttttgttttttcagcgATCTGAAACTGCAAAATGTTTTGATCGATCAAAA
CGGTACTGTCAAGATTGCTGGTAAGTTTTACAACAAGATTTTTTACCGAA
AGTTTAAACGTTTGTAGCATGCCCAAAGCAGGGTTTGCTGATGTATCCAT
CCGTAACAAAACTGtccattaaaaaaatatttcaaagtctTTATACATGC
CAATGTTTGAGTTTGCTATCAACTTATATTATGAAGTTATAACGCAAAAC
AGCACTCATctgtaaattgattttttcaaaaaatttcttcaaaacctaat
tttctttcaacttttAGATTTTGGTCTTGGATTTATCCCTTCCGAACCAG
GACAGTTATGCGATGAATACTGTGGTACACCAGGTTACACAGCCCCAGAA
GTTGACCGTGGCTATCAGCTTTTAAGTTACGATCCGTATTGTGGCTTTAA
AGCTGATATTTACAGTCTGTaagttgatttttcttctcatttttgattat
ttttataactTCTCAAAAAACCTACATTGTTGTCAATGAACTTTCTAACT
GGAActcagacaaaaaaaaacaatgcaaaactaacggggtaattgacaat
caataaATTTCAACGAATTATATATCATAGGGTCATAGTTACCAATCTTC
AAGATATATTTTGGATGCAAAACCTGTATTATCTAATGACTTCCTTTTAC
TTTTAGTGGAGTCATCTTGTACAGACTATTGACTGGAAAATATCCACACA
AAACATGGTTTAAAGATTCTTCTTTCTCTGCAGGTAAAACTTCCTCTTGA
CTTTGTTCTTGTTGAGTTTTTATGTCATTAATCTAAGGTACTCAAAAAAT
TCATTGACCAGGCGCCATTCCCCTCACTATTGCCGCAAAAATCTTTCTTC
GCACCAAAAGATAATTTTGTTTCGTCTAAATAAAACAATTCTGCATTCTT
CAACTTAGAATGCCGAGACCTCTTGCTTTCTCTGTTGAAATATGAACCAC
AACATCGTCCATCAATCAACGAAATTGCCAACCACCCTTGGTTTGCATCT
CAAGACGAAAAGGTTAACAAAGAAAGTCAAGAGNTTTCTCTGTTGAAATA
TGAACCACAACATCGTCCATCAATCAACGAAATTGCCAACCACCCTTGGT
TTGCATCTCAAGACGAAG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00000708TCONS_00000708Clytia hemisphaericatranscript
TCONS_00000709TCONS_00000709Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00000708-proteinTCONS_00000708-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005supercontigsc0000005:699524..709241 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.19	0.19	0.36	0	0.26	0.33	3.43	1.51	4.5	2.29	4.29	2.2	1.57	2.93	0.22	0.48	0.72	0.36	0	0	0.61	0.27	0	0	0.41	0.55	0	0	0	1.09