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XLOC_000311 (gene) - C. hemisphaerica

Overview
NameXLOC_000311
Unique NameXLOC_000311
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000002:1683250..1693725+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_000311 ID=XLOC_000311|Name=XLOC_000311|organism=Clytia hemisphaerica|type=gene|length=10476bp|location=Sequence derived from alignment at sc0000002:1683250..1693725+ (Clytia hemisphaerica)
CCGGTGCTAATACACAgattgcaaaattaaagtctgaagacaaatcacgt tTTTACTAGAATTTttttgtgcttgttacatgacatttatttctgattgg ttcgaatttattgacactaataaagttaccagctgtaagttgtaaagcaa gtaacatgggaataaaaacCACGTGaaatttttcgagtaatcacatgttt gattgtaattttgcaacccgtttATTTGACCTGATTTGTGctggttgttt tttttgaataatttgattttcttttttaggtAATGAACGATAGAGGTAGA GGAGGTGGACGCGGTAGAGGCAGAGGAAGGAGGCATGGTAGAGGCGGCCT CGGAGGAGCCACAAGCTACGGAGGTTCCAACCAGAGTCTTAACAATGATT TGTATGGAAGCAACACAAGTTTGAATGGAGCTGGTATTCTTGGTGGAAGC CCACAGGtaatagaatttttttattgtacaaaaagaaatacaggagactc ccggttattcgaaccTGCACTTATTCAAAAATTCGGTTATTCGAACACAG ATGGCATTCCTCTTGGATTTGTTTACTCAACTCAGGCAAAAACAATATCG GTTATTCGAACCATAGTATAAAAAAGCCGCGACTGGAATATGTactgcat tgtcttttcagttaattgctgttctatctctgtctccaagctttataaga acatcaagattgtcagtttattattggtagatagtgtttgaaatattttc ttattttccttcacaaaaagtttttttattgctagatatttttgaatctg tacccaatagaaaacttgaactgattttagacatattttaggggtatttt gtggaaacgatagtctttcgccaaaattaaaattataagaaatatattca agatgaaaactttcctgtcagtttgaatgataaattttgaaggtgctggc ttgaaattttcacagaattatcttgatgttctatttcattgatttctaaa aagatttcactgagaTATTGTGAATGCATTTCGAgggcactttattaatt tttgagttctttcagtccagccattttgtgcttgtttgaatttcttattg ttgatctttcctgcacaatgatttcatattgcaagtgtattatcaagggc atatcattaatgtctaaaacgcagtGAGAaataagtattaacgacaaacc aataaaattaccattaaagatgctacattacttatttcttgatcaacaaa tagtcatcaaatacgacagagatagaacagcagaaattcagatgttatca ttccagccgcggctttcttatactatgttcGAACTTTAGTTATTCGAACT TTCAGTTGTGTAAAGCAATTTCTATTTCCCTTAGGGGCAATTATAGGCTG AATAACCATCAGTTATTCGAGTTTTAAATATTGGGAAATTGATCCTCTGC Gattaaaacagtttttttgacaatttgttcaaatttattctttcttcaaa aagtcaaagtaaggggcactcgatttctaaacggcTCAATGTGCCGCCAA AAAAGTGGCTCTCAaattctgacccttacagtgtagcaCTTGAGCAATGA AATTGtacccttacagtacattttATCGAAAGTTTCTTACATTGTAGTTT GATTGTATAATCTTTTTTGCTGAAACCACCTGAAAATGAGCGTAACATGT CGACACAATGTACAAATTAAAATGGGTACGAGTCACAACTATAAAGATAT ATCAGATTTATACTGTCAGCTTTGCATTTCAGCAGTCCCTAAaaacaccc ttacagtgtatccagctaaaagaaaaCCCGTatagtgcactctatcaaaa gtaaacccttacagtgcatttcaaTGATTACGAAAAatctacccttaagg gcggcacatgtcGTGGGTCGGACCAATTGAGTGCCCTCCCTATGTTAAAC CTTAATATCTAAAATGACGTTGAAATTACCCTGAAACTTTTAACTTCTAC AGTTTTTTTGACGTAACgttaaaaaaatccaagaatAGAAAGGTAGATAT TACCATTATTGCTCCTGTAGAAGTATAAAACCGATTGATTaagtttaatt tctttttcatttagaaCCATGGAGGACAAAGAAGAGGTGGAGGTCGAGGT GGTCATTCacgtggtggaggtggtggcaATTATCATGGAGATTGGCTTTG TCCTAATTGTCGCGAAACTAACTTTTCGCGGAGAACTGATTGCTTTAAAT GCCATACTCCAAAAGGTCTGAACGCTGCTACTCCACCTCGAGGTGATGGA AACCTTGGACGAGCTGGCAGCgctggtggtggtggtggtaaCTGCGGTAG AGGAGGTGGAAGAGGGGGTAGAGGAGGCAACAGAGGAGGCTCCAACCCAG GTGGTGGGGGTCAGCAGGGTGGACCAAATTGGACTTGTCTCGCCTGCGGT GAATCTGGAAACTTCGCCAACCGTAATCAATGTTATAAATGTAAAACCAA TAAAGATGGAACCATATCTGCTAATGCTGCACTGAGCAACCCAGCGAGAA GTGCAAACAATATTGATCAGGAAATCATGTTCATCCAACTTTTAGCCAAA GCCAAAAATATTGGAAGTGTGGTCGAACAAAACTCCTCTATTTATCGGCG AGCCTTCAAAATGTGCAAGCAGTTAAAGATCCACCAGGTTGAGATTTTAA TCACCACAATGGCAAAGTTGAGAGCATCTTTCATGTTTGAAGAACCTCCA ATGATTGCACATTGTAAAGAAGTGGTCGATATCTATGTTGATCATTATGC AAAAACGAAGGGTGACTTTGGTTATGAAGAAGCTTCTGTTGTCCATGTTG AGCAAGTGTTATATTATGTGGAGGTGAGGTTGTTTAGAATAGAAGCGATT GCATTCTGCAGtgtagtctccataactcgaacatgcaTAGGAACATAATT CTTTTCGAATTATCGAAATTTCGATTGATttatttaaggcatttttaccT AGAAGGATTAGAGAGcttattcgagttatagagattcgATTTATGAAGAC TCCTATGTATTTTGTTGGTTGGGGTTGCTTTAAGTTTTCTTTGTCTTCAC TTATTCTACTTTCCACATTTGCTGCATGTCATGAAAATAAGGTGGTTTTG GGTCATTCAACAATATTGATACATGTTTATTCCATCATCTGAGGTTTCCC TTTGAGTTATAAATTATTAAAGTGATTCTATAAATAGAATATTTCGAGCC TGAATTCACATTCACAATAAAATATTTAGCGGTTTTCAGTTTTCCAAGAA ATGAAACTATATGATCGCTGAGCCAAGAATACTACATAGAGTGGATAGAC TATTTGACTTCCAACACAATAATAGGGGCCAACCTTTAGAACCAAAGTTG ATTACAAGATGAAAtgctgagcaaaaaaaaaactgcaACAGATCTTGTAC TCAAATACCCAAAGAAATACTACAGCTATTTAAAGTTCAGAGATTCTGTC ATATAGAGAACGATTTGACGACAAACTTTGTGTCTAAATCGCAGTGTACT TTAAAGAActtaaaaatcttcttttacAGCGACTACTTCAAATCGAATGG CCTGAGGCACACGAAgaagtcaaaattcaattgTCGGCTATTTTGAGCAA AGTGTATGATCTGATCGTCATGTCAAATAAACAACATCGtgaaaaaagta acaaaatcacCGACATGATCGAGAGTCTGGAAAAAGGTATAAATAAATCg ttgttattattgaaaattatttaaaaaagataactGTCTCGCAACCCCAG TGGAACTtctttcctcagtggggataaaaatggGGATGAGATATAAGTCA ATTTCCCAATGCGgctaaaattccagggtattctTTTCCTACCGGctggg acgaaatttttgccagattttccagtagggctggggtcccagtggatctg tgacacaggggtgtaagataatttagattttttataaCCGTCGTAAATTc gaaagacaacttttgtgacatactttctaaaaatgtttaacaacCCTGTC TCAAAATGTTTAACAGCCCTGTCTCAAAATGTATAACAGCCCTATCTCAA AATGTCTCACAAATAGCACAAAGTACAAAGTGAAAGGCAAGGGATGAGAT TTCGCAAAATGTGCTGAAAGATTTTCAATACTAAAAAACTTAACTGTCAC TTTTCTCACAGAATGGACCATCAAAACGAAAGCATCTACAAAAGAATCAC GAAAAGatgcaaagaaaaaagacaaaCGAAGAGCTGCTTCAGAAGTTTCA CGTTGGGAAAATGCTACCATTGAATGGTTATCcgatccaaaatattttca agcaaATTATCTCCCAAAAATGAAGGTGCCTGGGGATAAAAGGTCTCAAG GTGTTTATTCAGACAAGAAGGATTATTTTGATACGATCTGTCGGCTCTGG ATTGGATTGACGTTCGAAGACGGGAATAAAGCATTGAGTCCGAAATGTCG TGATCGTCAACAAGGCGCCACAAAGGAATGTGGCACGGTAAGTAAAATGA CGTAATTTAGAAATTGACCACAACAaaattgcaaagaaaaaaaacaagaa atttaatttttttttttgctcattatAAAAGTTGTTGGACAAAAGTAACG GTCATTTTAAAAACTTAGAATATACTTCTTCCGTAACAAATGGTATACGT ATCCACAAGTCCGTTCTTTTGAGCTTTTGCATTATGTTGCAACGTGGAAA TATCCCTCAAGGAAATTAGTCTATTTAAGCTGACATTTTCATGGCAGTGA ACGAGAGCCCCAGTGTTCCAACAGAAATTTAGTTTTTTGCCGCCAAcact ttttaaactttagagttcaaaaaattaatatctCATCCAAGAAAAGTAAT CTTggaattatttatttattcgaATAAAGTAAACGTTAAATGTTTTTTTG CACAGGTGTTATGGCAAGTTCCAAACGGTAATCGAGCCGAGGTTTGTCGA AGTTGCAGGAAGGATACTGTTTCTTATGTCTGTCAGAATATGAGACACAG AGGTGGCTTGTGTTCCAGGTGTTGTATGGGAGCCAAGCAAAGGCTTATGG GTCCTAAAGATGCGAAAGGAATGGCATCAACTCACATCTACGATTTTACC GTCAAATCTGTTGATTTCGAGGGTAGAATTTACTTATTTGGCATGGATTG CCGTAAACCACCTCAACAGCAAATTCATTGGAAATCCACAAGTAGATTAA AGGTGTCATGTCTAGTAGCTGTGGTTAAAGTTCAAGATCGAAATGCACCA TTAAAGAGAACTGATCGTATCATTTGGGCTGAGGTAGGAAACaatgaaat tttcttaattttattttttaataggcgaaatgaatttagaagacttaaaa ttgacgttttcaCGAAATTCGTCATGTTTTCAAATTATTGCTATGGTTAT TGATCTCTTAAAAAGTTTATTAGAAGTTTTACTTTATTCATAAAAGTAGC ACTTGAAAACTCAACAAAGGACATAAACAGCATGGGGAtggtatcaaaag ttattggcagGCAGTTATTGCACCAAATATAATCTTGAAAAGGCCTATAG GTTGAGTTTATAACCTGAAGGGCaggagaggaatcttcaacttttctcaa gcaaaaaaaagaagtGATTTCGGAATCGgacgatagattttactttcaat ctgacGTGTGTGTGAAACCACGTGGTAAATTCCCCATCCAACTGTTTCAA CTCTACCCTGGGCTTTCAACTGAATAGGCATCTTGTTATTTTTTCCGGTT GGCAAGcggaaagaaaaatataatccaaaaagcgatgacgtcatcacaaa atttccacctgtcggaaaaaagcaaaaatatatgGTTCACAAAAGTGTCT CTCACGGttgaaccaataaagatattgagattctgtttgaagattctgaa agataaaaggttcTTCTTTAACATTATTGCCGGATTTGTATTTCCCATTA Agattttatatttaaaattcatgctgaaaatgagtaacattttcaaaatt tgatgcattttcaaaaaaatttttagttgttttttaaATCACGTTATTAA TACCCAtcacctgtcaaaatttgaatatgattggATCAATACTTCAGAAA TTAtcgcaattttaaaattttgagttttaagcgtttttagcTTGGTTTTA TGTCAAGTTTCTcaataaaagtcataaaacctgatctagtGGAcgtatga ccctaaaatttgcgcaagtactcttaataagattttattaaaagtcagaa tgTTTCAAGTcgtttcgaaaatttttctccgagatatacacaaaagaaca CCAGCGTGGTAGGTTctaccccccctggggctaatagggtgaAGCAACAT ATAAGCAACATGTTTTCTTATTTACTATCCTCGTCAATTGAACACCGCTT CTGAGAAAGGAATGAGATTAAAAGGTATTTTAAAGTGAAAAAGATAAATt ccataaatatttttcgttcaCTCTTCAGGTTAAACAATATGATCGTGACG CGCGGGACGAGTTCAAAAGGAGAGAAGGTGGCCAGATGGTAGTGTCCGAT TTACGTGACAGCAAGGATGACGGTGAAAATGAGTTGAGACCAGGTGATCA TGTGGTTGTTATCGATTGCATGACCTTTGTACCTGAACACATTCCAGTGC TGAAAGCGTTAGAAGATCTCCAACTGTCAACTTTACCTTTCAATGACGGT ATGTCAGTTTCTTATTCAGTTTCTTCCTCTTTCATACTTTTCATTAAGTC ATTGTGCGCAAAAAAACCTGAAAGATTTTGATTTGCTTTGACCAAAATTC TTTTCCTGATCGATTTTCACGACTTTTTTCAACAAATAAAGTCCTAGAAA GagttaaaaccaaaaaaaaaagctGATCACAATTCAAAGAGTATCACAAT AGTCCAGgcgttttgattttgtttgtcTTTTTTGTTACTGTTAAAAAACA GAAATCCGGTAGGAAATCAAAAGTGTGAACAGGCTTGACTTTTTTCTCGT AGTACTTGTATACACTCGCCTGATTGCTTGTGTTGCAAGCACTAGACCAA CTTCTAAAGAGCTTGAAAACCTAACCTGTCCTGCGATATAACCTACCCGT TATCAAGACTACAGTTTAATTAATCCTGAATTCAGAAACATTTAGCTTTA TGTGCCTCAAAAGAAATTAAGTCACCTTAAATTTTCTCTATTTTAGGTGC TTTGTTGAATATCTCAATCGGTGGAAAAACGGCACCCATAGATTTTGACA AagaatttcaaaagttatcggCAAGAAAACAGCGACGTCGGCTAAGCTCT TATCAAGACGATTACCCCAGATCTGACGACGATGACGAGAGCGAAAGTGA CGAAGAACAGTCGTATAATATGCCGAGTATTGAGAACCTTGTCGATTTCA TGGTTGATCAAAGTAAATTGGAGCCGTTGATTCAAATCAGGAGAGATAAT CCTAATGAAACCAGCCGGCTCAAACAAAAGTTGCgtgatttaataaaaaa aacaacgctTGATCGTGAGCAGCTCAAAAGCTTCATCGAAACTTTTGTAG AACCTGTTCATTTAACACAAGGGCCACCGGGGACAGGCAAATCGTATCTC GGAGTCGTCATTGTCCGTGCCTTGATTATGATCCGTCAAGCTTGGATTAA CACGTGTCAAGTTCTGGAGATGCCAATCTTGGTTTTGTCATACAAGAATC ATGCAATAGATGAGTTTTTGGTTGATCTGGTGAAAGCAGAAGGTTCATTG TCTCTGTTGCGGATCGGATCAAGTCAAAATCCAAGTCTGCATCATTATCT AGAGCAAAATCAGAGAAGTTATGTGGATGTCACTCGGAAGTATAAAAACA CACTGACCAATCTGTATCAACAGAAGACCCGTTATCAACAGATCAAAGAT GACTTATCCCCTTTGAGTGGACACCAGGCACACCAAGGCTCACAGCCGAC TTCAAAGGAGGAGCAAGATGCAAAAAATAAAGCAAGCTACAATGCTGCAA CTTATCTATGCAACATCATTGCTCGTGTGCAGAAGATTGAAAGCTTTTTG GAGAAGGAGGAACAAGATGTAGAATCAGACTCTGAATCTGAAGATTCTGG ATACAGTGATTGCAACATTACCAACCTTTGGAATGATCTGTTTTCTGCAA GAATTGAACCAAATATGGAGACTGGTCATATGGAACGAGTGGGGAAACTG AAGTTGGAAAACAAAGACATCGAAACGCTTTCGGAAAGAGTTGCTCATTA CAACAAACCTGTTCCAGAGATCCTATTTCAATGGATCATAGGAAGATACC CTTTACCAAAATGTGGTGTAGCTGACTGCTTCATAAATGTTAATGCGATT GGTGTGTCATACTGCTATCAGCACATCTGTCAGTTGGTTAACGAGCAAGG CATATCGGTTTGTAGCAATCTCCGTCTGCCTACACACCAATTCTTCTGTG AAGACCATGCATGCAAATTTGAGGGCGAAGAGGTTTGTTTAGCAGTCCGA ATGGATCCACCACAGACCTTTTGTGAAGACCATGCTTGTTTTGTTTGCGT TCGAAATGCACCAGACAAAGTTGCCAATGCTGCTGAAGACGAAGAACCAA GGAACACGTGTGCTGACCATCCACTTTGTACTGCAATGACAGGAGAAGAC TCTTGCTTGAACGAGGTTGTCCCAAAGACTTCTTACTGTCAAGATCATGC TTTTCCGATATGAAAGCACGTAGAGGGAGGCAAAAAATGTACAGATTATG TCGCATCCAGGGGTGAACCATTTTGTGAAAAGCATAAACCTAAGATACAA CCGAAAGAGCAACCAAAAACTCCAAAGTCTTACAAATACTGCAAAGCAAC AACTAAGAAGGGCAAGCCATGCAAAGGGAAACCATTGGCTGGACACGCTT ATTGCAATGATCATATAAAGAAGTACGGGGACCTGGAAGCTGAAAAAGAA ACTGGAACCCACTCTTGGGATACCACATACCATGCAGAATCAAATGAGAC AGCTTCATTATTAAATGACAAAGATACAGTTGAAAGTGCGTCTAAGGAGA CAGCTGAAGCAGGTAGTCAAGGTGAACCTGCTGGGGCTGGGACCTTCGGA TCTGGTCAAAGTGTTGAAGCAGCAACTGAAGGAAGTGCCCCAAATAATGA TGTGGTAGACGGGGAGGAAGAATATCACGATACATACACAGAAGATGAAC CGTTGCCAGATGAAGATTTGAGCCGCCCGGACGATGAAGACGATTTCTTT GACGATCAGTATGAGCATATGAAAGATGTGTTGGGAATGGAAGAACGAGA AGATATTGgtggagaagaagaagaaattgataaaaacaagGAAGATGAAG ATATGGTCGCAACTGTAGATGAACAAGAAGAAAAGGTAGAACGTCTTTCG TTTTGAAAGTTACAGCATTTTACGATTTTGATATGTTGTCGCTATTTGAT ACATTGAGAAGTACTACAATGCCACACTACTACAATCTATCATTGTTTTA CCATAGTTTTGTATGTAAAAATTTAGTATAATTCTATCTTAGGTCAATCT GATTCCTGTTTCTCAATGGTCATGGGAAATGAACACAGAAGATCGTTTAG CACAAGCATCTCTTTTAGagaagaaatacaaagaattgtTAGCAAAATTA AATGTGAAACGAAACTACGAGATAGAAGTTGCAAGAGAAGAATACCACAA ATCGAAAGTTCGAGCAAAGTCACGTGTCTACGAAAGCAAGACTGTCATTG GTGGAACCATAGTTGGATGTATTGGAAGGTTTGTATCATTTTCATTAAGC TTGGCTAATTATACTTTTAATGGAGTGAGAAATTTTTCCAATACATAAGA TTTCATGCTTTTTCAAGCATTTATCAGTTGGNAGTTGGATGTATTGGAAG GTTTATGCCTAATCTTTAATTTATTGTTAGCCAAAAGCTGAGTACTTTTT CCTTTTATCCTTGAACCGATTTCAGATTGCCTTTGGCATCATTGACTATG ACTTTTGCTTTTGCTGGACAACATGTCGAAGTCTTATTTTGAGGAGACCA ACAACTGATAAATGCCTCAAGCAGGGCCATTATCTTTCTGATCTCTTTAG CTTATGACTTTTTGAGAGTTGTTTGGTCTTTCCTTTTTATAACCAACTTT TTAAACGTGATAAACTCAGAAAGTATGAATCAGATGAATAACTGCTTTGA GTTTCAGGTTATTTTTAAGATTCTGTCCTGTAGTGATTCCTATGCATTAG AAAAATCTTTGTGAATCCTCAGCaattaaaaatttatatttgtCTTTAAG GTTGGAGTCTATCCGCAAGATCAAACCGTTTGCCATTCTGGTGGAAGAGG CTAGTGAAGTATTGGAGCCTCTCTTGTTTTCATGTCTCGGTGAAGACACG GTGAAGTTCGAAATGATCGGTGATCA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00000505TCONS_00000505Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00000505-proteinTCONS_00000505-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:1683250..1693725 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.15 1.63 1.83 1.85 4.76 2.93 1.99 2.46 1.34 1.26 1.93 1.71 4.89 6.44 6.98 13.09 6.04 7.28 7.94 10.28 9.74 7.99 3.19 5.82 10.72 9.81 8.67 10.81 3.72 2.88