XLOC_000310 (gene) - C. hemisphaerica

Overview
NameXLOC_000310
Unique NameXLOC_000310
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000002:1605701..1614617+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_000310 ID=XLOC_000310|Name=XLOC_000310|organism=Clytia hemisphaerica|type=gene|length=8917bp|location=Sequence derived from alignment at sc0000002:1605701..1614617+ (Clytia hemisphaerica)
CCTACATGGAATGTATTGCCACAGTTCGTCGTCAAGTCAACCTTCATCCA ctagcttaaaaaaaccttatgCATTATCtctttcatttatttatattaGA GCAAGATAGTTTGAAGTGAAAATGACATCTCAAACACCATTTCTAGCAGC TGGTCTTCCAGGGCTGACTTTTGGAATGTCCCTAGGTAAGTctttatatt tttattccaTTCCTTGATTGCTAGATTTAAACAAATAGATAATTAGATGG TGTGAGATCTTTATCCAATTCTAAAATTAAACCTTTGTCTATTTTCAAAC TTCTTGGTTTTTagtaaatatataaataatagAATTGTCATACATGAATA CAAACAAGTTTAATGCTTTGAACCATCAGGAGCCATAGTGCAACCTATAT GGCCCCTTGAAATTTACTAAACAAACTAAAAAAGGTCTTTTACTTTTTCT CTCACATATGCCAATCAAGTGATTTTGATATCGATAATAAGTTTCAACAC AACTGATCAATGAAATCAATAGCCATTCTGACAGGGGGGTCAAGCCTCAG GGTACTAAAGCATAGCCTAGAGAGGGTacttatctaaaaaaaaatttgac tcaTACCACCCACCCAaataagtacccgggtacttaatGACTTTTCCCTT CTAGACCCTATAcccacccaaaaagtacccgggtacttaaggACTTTTNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAA ATTCACTTTAAAAACGAGAATCTGTAACACTTTTAATCTAAACTCCATTT GTTATACTTCATTGAGCTTTGTTGTGAGTGCCCACCCAGAATGTCTTAGA GCAGGGCCCCTGCTTAGAGAAGTTATTATCAGGTCAAAGAATGCAATCAA GCAACCTATTGTGGTAAATAgaaacaaaataatataatacgaaaatggct aaaaaaacaAGAACATCACTATTTCACGTGAAAACATAATAGAATAGAAG GAAAGGGAAACACTCAGATGGAGCgcgatcaaaacaaacaaaacaggaCC TTGGCTTTCACTTTaacttcaaaacttttccctaaatttctttttcttgg caGGTCTTTTTATGTTTCGATATTACATCAACAatataaaacaatttaaa actttcttttcatCGATAATATTTTTATATGGCAGAATCATGTTTTTATC TGTTCTTCGTGTCAAATTTTATNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNCAAATTGCTCATTATAtctacttttcaaattcaaggaCGTGGGCTA TCCATTCAGCTAGATCCACAAGAAGAAGTGGTGATACCAGAATTAGAAGT CCAAACAGAAGTTGACGAGTGCTTCATCCAAAACTCAAATGTCCCAGTAA GTATAAGTATTATAAGCTCTTAAAAAGtctcaaaatgattttttctgaac aaAGTACGAACAAAAATGTATTTCATGGTTTCATCCAGCTTTTTAACCCC CCCATCGAAAGGTTAAATTCCCCCATCAGTCTTAGCCCCTCCATGACCAA AACATAAAACTTGGGGACCCATCATCATTTGTCTTTGTCATTTTCAGCCC TTATTTTCTGAATAAAAATGCAAGAAGCAGCATATAATAATTTTACTCGT AGCTACGTATTGCTTTTTACATATGTGAATCAAAAGTAAAACTATACGAT CAATATGTTAAAATATCGAACAATGgttgaaaatagaaaatgctTGTACA CAAAAATTAACCCCCATCTTAAATCTCTCCCCCATCAGCCTTGGtcacat ttgaaaaataaaaaaatacctgTCCATCATAATTTGGCAAAATTCTTGAT GGAGGGGGATGAAACTATGTATTTACATCTAAAACTTGGTAGCCTGTCAC CTTTATTAAAAACTAGAATCGTTTTATGAAGGTTATAATTATAGATCCCA CAATATCTCAATCGTCCGAAAAAGcgtgaaaattaattttcttaaaaaaa aaagatatctcTCGTTTCTTTTAGCATGCAATGCTGGTTATACATATCCA TGCACTCCATGACTTGGTGGTCAATTCATTTGATTCCAGCAGTGAAGTTA TTGTTTATGTTTCCTTAGATGTGGGTTCTGTAAGAAAAGCAACTGCTCAA AAAACATACCATACTAAAAATAATTCAACTGTCATATTTAATGAAGTCAA ATATTTTCCTGTAgtggtaagaatattttaatgaCAATTCCACAATATAT GAATTCaagcttttccagaaaagatGATAGAAATGTCAATGGTctgtttt cataatttttagtatttttttatgATCATAAAAGGAACTTAAGCTTGGGT TTTGTGTATTAATCATTACCCACtacacttttctttttatttaatgtatt tttaaaaaattcgaattttaaGGTCAATCCAAGCCCAAAAGCAGACATGA ATAAAATCACTATATTGGTGTTTGCATGCAAAGTGGGTGAAGAAAGTGCA GTGACGGTTTCTAAACATAAGATGATTGGAAAATATGAAACCAATATTCA AAAACTGTTAAAGGTTTCTTTGAATTTAGAATATTACTTTGTTGATATAT TTTGCTGGTGGTTAAATATTGATACCCAATTGATATCTCTTCCATTTATC AATTTTCCACTTTCGTAAATTCTCATCTAGCTCGTTTGCCTTTTGTAAAA TTATCTGAATGTTAATAGATAATAGACTATTGNCTTGCTTGTCGTTAAAT ATTGATACCCAATTGATATCTCTTCCATTTATCAATTTTCCACTTTCGTA AATTCTCATCTAGCTCGTTTGCCTTTTGTAAAATTATCTGAATGTTAATA GATAATAGActattgtttttttaaatttgataattcttcaaaataaaaac ttttaccGACCGTTCGACCACCTCTAAAAATCTAGGGTCCAATAAaggca acattttttcaagtgCAGCCTGACTATATAATCATATCCAATTTTTTTAC TacccattttttattttgtcttcaGGTGATGGTATGCAAAGAAGAAAGTT CATTACTTAATAAGAAGGGAAACGTGAGTTAATATTTCAATTAATATTGA AATATTGTCTTCCAAAGACGAGCAGCTCTAAAAATCATGAGCTCtagttt gcttaaaaaagactacGCAGGCCGTGATAAATTACGTTTAAAGTTATAAC ACAAACCCCTCTATTGATTAGGTCAAGAAAATTATAAGACATGCATTAAA TCAGTTGAAAGTTTCTGACAACCATTTTTAATCTGTTAGATTGCCGGCAA GATCGAATTGGAATATGGCATTATGTATGGTTCATTTGGTTATGGTCAAT CACATCAGGTATCGAATTGTTAAACTAGAATTTATTCCTTGTGaaccaaa aatgaagttattCTGTTAAAGTCTTGAAATCAACGTAATTTCTAACCAAT GAAAAAGCGTTTAAGAACGATGCAGAATCGTTAACCTTCATCCATTTCTG AATGTAATTCAtctcagtaaaataaaaagcaaaagaaatttttactgtTT CAATGTACAACATCcacacaatgttgttttaaTGTTCATCTAATGTGATG GCGTTCTCTGGACGTCAAGACAACGTTATGTGGAAGCTAGGAATAAAAAC CCCCGTACCACAGACCTGCTGGGACCCCCACCCCACCTGggaatttggcc aaaatttctttcatgTTGGGAAAATTGCCCTAAAATTTCAGCcggaaatt gattttgatttcattcccattCGAAGTTTAGGGATTAGAAGGGATTTTTC GACTTATGAACAATAGAATTACTATCCCCATCGAGATTTCGTTAGAATTC TCCATGGGCTACTAGACAGGGGTGTGAAAAAGAAGTAGTCAAGTCAGTCA TCACAGGTCAGTCATGTCGTTTTTTGTCCTTTAGTTTCTTCTCGTGAATC TTTTATACAGTATAGAAAAGGAGTCAGCAATGGTAAAAGTTTTCTAATTA GATACTGTTTGTTTCAGTTAAAGTCGACAACTCATTCAGCCAAAGAGATT ACAAAGATGTGTTTGTTCCCTAGATTGCCACCAGTTGATCAGACTGAATT TCGAGGGTGAATAGTTTAATCATCTCGAGTTTAAAGTACCTTTCTGCTAA AACCAGTTTCCTCGTACTTGTTTAGCGCTTTTTTTCGTAGTCTTTGATTA ACATTACTCGATGATACCAAGGGAGAACAGTTCTTGCTTTGCATttggat ttcaaaagttttggacagTCACTTTAACATGCGATCTTAAAACTCTAAAC TTGATTGCAAATTTCATTTGCTTTAAGTGTGTACTCCTTTTTTTGCTATC TTGTCAGACAAGTTCTTTTGAGTCGGGTTCCCGTATTATAAAGGTTAcat taaaaattttttgtccAAGAAAGTGTATTCTTATCAGTCACTTTGACcct ttttatttaatttcagaACAGCAATCTTTCCACGGAAACTGAAAAATCCA TCTTTCATTAAACTCGAAGACGAAGCAGTAGATTTAGAGCCTGATATAAG CTCTACAAAAGGTATTTCTCGAGAAGTTTTTCGAACCGTTAGTCATTCTT TACATCACTGACTCACTCCCCCGGTTAGAATGTTTTACCAAGCAGTACAA AAAAGGGCCAATGacaactttttttctgattaAATAGATATTTCTCTAAC cttattttcttgtttcttCATCATTGAACTAGTTATGGTATATTATAATA AAGATGCTTTAATTGTTTTCATATTTCTTATTCTTTTCAGGAGAACCTTC ACTTCATTGTCCAGATTTTCCATTGCTGAAACAAAACATGCAAAGGTTTC CATCTTTCCTTTAATAATACAATAAAGCTCCAGGGAGGAAGGGCTCATTA AACATTGATccatcattttgaaaaactctattttaagaaatatgattttt tacgctcaaattatttttcttaggctaggGCAGTTACGAGAAGTGATGCA TAAACAAAGTACGCGAACCAAAAGAATCTATTTCCTTGACAAACTTTTAC AAGACAACTCGGTATGTTACAAACACCTTTAATgaattttacattttcaa aCTTCTACATTTATTGAAAGCAATTGTATACTGCTTCTTGTTTGCTTCTT CTAATTATCCTTATAAGGTATTCCAGTTGCTTTGAAACACAACGCTTTAT TACTTTTAACGCACAACCTATTGCCCTTGTTTGGTATCTAGTCAAAGAAT CTGACTCTGGGTCTTTTCTGCTATACTGTCGGGTCGGGGAGAGAGCAAGA TAACACCTACACACCCTTTCCCCCGTACCGTTATGAAGTGACACAATtat aaacttttgttttttgttgtatAAGTATTTGTCTTTTCATCTCTGACACT TTTTGACACTCTTTTGACGTGATATAGAGAATTCCCAAAAGTCATAACTT TCTCTAGAATTTTAAACCAATAAAAATACAAGCACGGAAAACTGTGCTAG TATCGCTGTCATAAAAATCGGTAAGATCTGATTCATCGAACGATTCGCCA GGTTTCCGGGCTGCGAAATACTAATGTTTTAACACCTTCAAATGAACGAA TTCATTTAACCTACTCACTTGCATTAGAAATTGTAATGTTATTGtcctca atatttttttatcaataaaatttccGCTTGAGCAAAATCAGTAAACCATT GAAAATGGGGCTGTTATCAATAGAGCCACTGAACTCCAAACTTTGGCTTT GCTCTATTTTGTCATTCTGTCTGACTAATTTTTTAAATCAGCTGACACAT AACGTTCCTTCAACGTTCATCGAATATAAGACTTCAGATGGACAGTTGTT TGGAAGTTTTGTGCCACAAGTGATTTGGTGACatcttgaataattttttt tggttgccAGGGTGTTGCTACGGAAGAAGATGATAACAGTGATGATGAAA CAAATAAGCATGACGGACGATCGGTCATCCCTCCAGCATTAGCACTACTC ATGAATGCCACCAAATTCTTTTCAGATGCTCCTGGTAAGCTATTAgttgt taaaatatttttctgtttcaACGGATTTCTGTCTCAATGAAGTATATTAA GAGGCTTTTCCGTTTCAAATAGACGAtgtcggctttccgaattctccccg aatgattaccaatgatgcattgcgcggaaagtcaatatcgtccgtaaatt tttttgcgcaatgcatcatgggtaatcattcggggagaattcggaaagcc gatatcgtctatttctGCATAATTctccaaaatttcaagaatgtgtccta attttaaaatttgaaatccaTTTTCTGTCTCCGACGAAAaatcttgcttt gaccactgactATTACTTTATAaaatggataaattttcgcggggattaag tTTCGtagttgagctcatccgcgaaattttaagatttcacggggacttaa tttcgaaAATGGCATTATCAGGAGATAATTATCAGGAGAcaatattttta tgattttgtgtgtttttactGCCAAATTATGTACTGGTTGTCAAGATACG CATTACTAGCGCTTTTTGGATGTCAGTTAACATTTTAAAGTAATTATctg acattttttgagttttgaaaaattttacggATAAcacctttccaaatttc cataaggacttaatttcgcggatgataCCCCAATCCGCGAGATCCGCGAA ATTtgatccccgcgaaaatttatcccattaaagtataagATGGGTCGTCA AAACGTGCTCAGAGAGAaaatttccttttcaaaatAACCTCTATCAACCT CTAAATAACCTATCAACCCTTAAAGAttgagaaaaagatttcaaatgTGT AAATTTGTTGCGTTGGTTCTTTATAGAGTTTTGTCATAGTTCCTCCCTGG CAAACAAGATCCTAATCCCTTTTTGTGGCGTTGGGTACTGATCCACAGTA AGATTCGACTACTAGTTCGACTAGTTCAATTAATAGTTCGACTATTCGGT TACTAGTGCAACTGAAGCAGAATGTTTTATTCATGATAAGTTATCCGTAT CATTTCAAGATATACTTAAGCCCCTTTTATTTGTCGAAAATCGAGTTAAG ATCATACCACCCTAATTCAGCATCTCCGCTTTCGAAAAATTGGCCTCAAA GCAACAAACTTCAAAgaggaatgttttttttggaattcaaGAGTAATATG ACATTTGTGAATTTCTTTCCGAAGGGTAACATGAATTATATAttgcttta tttataagaaaaacactttctttacatttttcagGAATCAACAAGCGTCG TAAACCGTCCAAGGAAAGCCAGGTATTTTATTATTATGTCTGCTCTCTCC TTATTTAACACACCTTAAGTGCCCAATCAATTAATTCTTTGCCAACGGGA ATCTAGCACAGCtgacacaaaattttaaaacaacgTTTAAATGCCCGTGA CACATCAAAAAGGTTTTATAAAGataaaagcttaaaaaattgttgagTAT GAGCAGGGACCACTTATGCTTTCCATAAGTTCTTCATCGATATTGCAATC TAATTGTGTGGATTATGAAAAAGTGAGTATTACGGTTATGTGTGTGGGGA TCGATTTTTGAGTCGAGATTGGAATGAAatttggataaaatgaaaaatat cttttagACAGCGTCGAATTTTACTCCGGAGTCTAatgataagttttttt taatcttagaGCGACGAAGAATCCCGAAGCCGTAAGTCTCTCTTTAATTT TGTACACTGTTTTAATGAAAGAAATTCGAAGACTTATTGATATTTAGCGA TTTAAGAATAATGTTAGTGCCTTTCAGAATATACTGGTTTTGAGCCAAAT TTGTCATTTAATTaggtaaagaaactaagcgcaTTATCTTAAAAACGCGA AGCTGAAATCTAAAAGAAGAATCTGAGAGTGCGTGAATATTTACATTTAC ATCATATTTCAGCTTTCTCTTCTTTTAGGTTCTCAAAGTGTTCAGCCAGG AAATTccaaagactttgaaagaatACGAGATCGAATTTTCGCTCAGCGTC GTAAATCGTTAGCACCATCACCCTTACAGTGAGAATGTGTGGTGCGTCTT GCGGACCAAAATATTACAGAACAATGATGAATTGAAAATGTAGACGATAA TTAGATACTCATTAATAACTCACTCAATTTACTGTTTAGTATTGTATTTC AATAACAATTGTTTCTTTGTACCATATCTATcaccagtagcgtggtggca gggggcaGTACCCTCCAACAGCGGCCGATTTATTTTAGGAGCCCTCTAAA ATAAAATGGGTGCAAAACAAAGACGCTTCTGATTACTAATTTAGACGCTC CTTTGCTTTTTACACGTTAGAATTGGAAGTTTTGGGTCAAAACGagagaa aatgtcaaacattttcg
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00000501TCONS_00000501Clytia hemisphaericatranscript
TCONS_00000502TCONS_00000502Clytia hemisphaericatranscript
TCONS_00000503TCONS_00000503Clytia hemisphaericatranscript
TCONS_00000504TCONS_00000504Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00000504-proteinTCONS_00000504-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000002supercontigsc0000002:1605701..1614617 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.26 5.31 1.97 0.99 1.48 1.19 3.31 2.5 1.99 2.18 2.04 1.21 1.23 1.13 0.97 1.53 2.12 2.22 1.03 0.63 2.01 2.26 2.89 3.03 21.08 24.54 0.97 0.71 0.96 1.31