transcript:BL97482_cuf2 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97482_cuf2
Unique Nametranscript:BL97482_cuf2
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Full-screen view
Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97482_cuf2

>transcript:BL97482_cuf2-protein ID=transcript:BL97482_cuf2-protein|Name=transcript:BL97482_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=158bp
LHDHGQKYIIILDPAITNQDRRDGSPYQPYEDGLRDGVFVKAADGETNLI
GEVWPGTTLFPDYTNPSTTEWWSEYCQRFHNVIPYDGLWIDMNEPKSFMN
GSNNGCESNRWNYPPFKPAIVGRIMYDLTLCMDAQQSWGKHYDVHSLYGH
SMAIATRS
Run BLAST on NCBI

mRNA from alignment at Sc0000011:1615827..1618177-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97482_cuf2 ID=transcript:BL97482_cuf2|Name=transcript:BL97482_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=2351bp|location=Sequence derived from alignment at Sc0000011:1615827..1618177- (Branchiostoma lanceolatum)
CTTCATGATCATGGGCAGAAATACATCATCATTCTGGTAAGATGTTTAAC
AAATGATTCGGTATCTACATATTGCTGTATTAGCCAGATGCCAGTCTGTA
TTCAATAGGGGTCTCTTCCATGTAATATTTAGCACGTGTCGTTGATTAGC
TAGAGATAAAAAAATAAGTAGATTCTGTGCTAGATCCAATGGCTAATTTA
TCGCCTTTCGTTTTGTTATTCGCCCGCTCGTCGGTGGAACCAACGACGAG
AAAACGATGGTTGGTTAAGTGTCATAACTAGAACTATTCTGTTTCAAATA
GGCATTTAAGCTTACTACAATTGACAATAAAAGGCTTGACGTCATGATGT
TTTATAAGCGATCTCTTAACCCATTCCAATTCCAACGAATTTTGGACGAG
CTGAAAAAGTATTGGGCACTGAATTGAGAAATAGACTAACTTCTTCTTTG
CCGTTGTGTGTCCTGCAGGACCCGGCCATCACCAACCAGGACCGGCGGGA
CGGGTCGCCCTACCAGCCGTACGAGGACGGGCTCCGGGACGGCGTCTTCG
TCAAGGCAGCGGACGGGGAGACCAACCTGATCGGAGAGGTAGGATGCACA
AAGGATCGGATAAAACGCAGCATTTACCATGTACATGGGCATCTAACATC
ATAGCATGAGAGTTAACATGAATTGGTAACTTGGTACATTACATCATGGA
AAACTATTCCTCAGGGCGTACAATTTCGTATCAGTCAAATGAATTAGTTC
AAGGTCTTTGAGATCGATTCCCTGGTTTTCTTCGAAATAATTGACCAGAT
TCACCAGGCCACGTGACTTACAGAAATGTGACCTGGGCCATGGGTCAAAG
GTGATCGGAAGTCGGCATCGTCCCCCGTAAGCGATTTTGGTCAATTTGTA
TTAATGACGTCACGTTACAAGAGAACAATTTAGAAGAAGGTCAGAGGACC
ACGTCTTCGACACCCTTAAGACACCCTGAAAGAGCTGCAGGTCACCAGAA
CCAAATAAAGGTCCTGTGCCGAAAGTAGAACATCATGAAAAGAGACGTCT
ATGACAGCTACGCGTCAGCAGTTGATGCCCGAGGATGATCGGTTCATTGA
TTTATCGTTAGTTTTATTGATTCTAGGAACACAGATTAAGAACTGATACT
TTTTCCATCCAGGTCTGGCCCGGGACCACGTTGTTTCCTGACTACACCAA
CCCCAGCACAACAGAGTGGTGGAGCGAGTACTGCCAGCGGTTCCACAACG
TAATACCGTATGACGGGCTGTGGATCGTGAGTAGATTCTTTTGGCGATAT
TGGCATACAATTGATTAGTTCGAATTTGCGATTATCATTTCCTATTTACA
TCGTGATTTTACTTTCAATAAACAACAATTTTGTTAGAATTAGAGGATTG
GACGTAACTACGTAGCAAATTACATTGACAATGTCTACTTTAGAAATCAA
AATTGTCAAATAGTACGAAGATGATGTAAAAAAACGCATGTAGTTTATTG
ATCAACTGGTCCTAGATTATCATTAACGTCATAGACAATGAAGAAAATAG
AGTAAGGGATGTTAAACTTGTAACTTACGATGAAGAACATATTTGTGCAT
TTTCACTGCTTGATATGTTAGAATGCCTCTCACAATCATATGTGACTTGG
ATTTTGTGACCGTTGTTACAGGACATGAACGAACCAAAGAGTTTCATGAA
CGGGTCCAACAACGGATGTGAGAGCAACAGGTGGAACTATCCTCCCTTCA
AACCTGGTACGTGATGCTCCCACTTCACTACTTTACGATGCATCAAGTAA
TACGAGAAATAATGTTATAATCAAATGAATTTGGCCAGTATGAAAAAGTG
AAATGACGTAACTTTAAGCAAATGAAATTTGACTAGCTCTCAGGAACTGG
AATCTATCCATTTTCGGTTATGACCCTAACCTTAATCGGGAAGAATGATC
AGTCACCTCTGGCACGTGACAACAGCAATGAGTCAAATGTTTCAGAAATC
CTGTGTCGTCCCCCGTCTCGCTTTAATGGTATGATACATGTATTGATATT
ACTAGTAACTTAAATTGTATTCCAGCGATTGTAGATAGCATCATGTACAT
ATGTCCAGAAAGTTATATGCATTATTTATAGTAGTATGACATTGTCTAGG
TCTACTGGCAGGCGACTATAAGCAAAGGTTTATTAAAGATGCCTGTAACC
CCGTATCTGTCTAATGTAACCTGTATTCCAGCGATTGTCGGCAGAATCAT
GTACGACCTGACGCTGTGCATGGACGCCCAGCAGTCCTGGGGGAAGCACT
ATGACGTGCACAGTCTATACGGACACAGCATGGCCATCGCTACCCGATCG
T

Coding sequence (CDS) from alignment at Sc0000011:1615827..1618177-

>transcript:BL97482_cuf2 ID=transcript:BL97482_cuf2|Name=transcript:BL97482_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=2370bp|location=Sequence derived from alignment at Sc0000011:1615827..1618177- (Branchiostoma lanceolatum)
CTTCATGATCATGGGCAGAAATACATCATCATTCTGGACCCGGCCATCAC
CAACCAGGACCGGCGGGACGGGTCGCCCTACCAGCCGTACGAGGACGGGC
TCCGGGACGGCGTCTTCGTCAAGGCAGCGGACGGGGAGACCAACCTGATC
GGAGAGGTCTGGCCCGGGACCACGTTGTTTCCTGACTACACCAACCCCAG
CACAACAGAGTGGTGGAGCGAGTACTGCCAGCGGTTCCACAACGTAATAC
CGTATGACGGGCTGTGGATCGACATGAACGAACCAAAGAGTTTCATGAAC
GGGTCCAACAACGGATGTGAGAGCAACAGGTGGAACTATCCTCCCTTCAA
ACCTGCGATTGTCGGCAGAATCATGTACGACCTGACGCTGTGCATGGACG
CCCAGCAGTCCTGGGGGAAGCACTATGACGTGCACAGTCTATACGGACAC
AGCATGGCCATCGCTACCCGATCGCTTCATGATCATGGGCAGAAATACAT
CATCATTCTGGACCCGGCCATCACCAACCAGGACCGGCGGGACGGGTCGC
CCTACCAGCCGTACGAGGACGGGCTCCGGGACGGCGTCTTCGTCAAGGCA
GCGGACGGGGAGACCAACCTGATCGGAGAGGTCTGGCCCGGGACCACGTT
GTTTCCTGACTACACCAACCCCAGCACAACAGAGTGGTGGAGCGAGTACT
GCCAGCGGTTCCACAACGTAATACCGTATGACGGGCTGTGGATCGACATG
AACGAACCAAAGAGTTTCATGAACGGGTCCAACAACGGATGTGAGAGCAA
CAGGTGGAACTATCCTCCCTTCAAACCTGCGATTGTCGGCAGAATCATGT
ACGACCTGACGCTGTGCATGGACGCCCAGCAGTCCTGGGGGAAGCACTAT
GACGTGCACAGTCTATACGGACACAGCATGGCCATCGCTACCCGATCGCT
TCATGATCATGGGCAGAAATACATCATCATTCTGGACCCGGCCATCACCA
ACCAGGACCGGCGGGACGGGTCGCCCTACCAGCCGTACGAGGACGGGCTC
CGGGACGGCGTCTTCGTCAAGGCAGCGGACGGGGAGACCAACCTGATCGG
AGAGGTCTGGCCCGGGACCACGTTGTTTCCTGACTACACCAACCCCAGCA
CAACAGAGTGGTGGAGCGAGTACTGCCAGCGGTTCCACAACGTAATACCG
TATGACGGGCTGTGGATCGACATGAACGAACCAAAGAGTTTCATGAACGG
GTCCAACAACGGATGTGAGAGCAACAGGTGGAACTATCCTCCCTTCAAAC
CTGCGATTGTCGGCAGAATCATGTACGACCTGACGCTGTGCATGGACGCC
CAGCAGTCCTGGGGGAAGCACTATGACGTGCACAGTCTATACGGACACAG
CATGGCCATCGCTACCCGATCGCTTCATGATCATGGGCAGAAATACATCA
TCATTCTGGACCCGGCCATCACCAACCAGGACCGGCGGGACGGGTCGCCC
TACCAGCCGTACGAGGACGGGCTCCGGGACGGCGTCTTCGTCAAGGCAGC
GGACGGGGAGACCAACCTGATCGGAGAGGTCTGGCCCGGGACCACGTTGT
TTCCTGACTACACCAACCCCAGCACAACAGAGTGGTGGAGCGAGTACTGC
CAGCGGTTCCACAACGTAATACCGTATGACGGGCTGTGGATCGACATGAA
CGAACCAAAGAGTTTCATGAACGGGTCCAACAACGGATGTGAGAGCAACA
GGTGGAACTATCCTCCCTTCAAACCTGCGATTGTCGGCAGAATCATGTAC
GACCTGACGCTGTGCATGGACGCCCAGCAGTCCTGGGGGAAGCACTATGA
CGTGCACAGTCTATACGGACACAGCATGGCCATCGCTACCCGATCGCTTC
ATGATCATGGGCAGAAATACATCATCATTCTGGACCCGGCCATCACCAAC
CAGGACCGGCGGGACGGGTCGCCCTACCAGCCGTACGAGGACGGGCTCCG
GGACGGCGTCTTCGTCAAGGCAGCGGACGGGGAGACCAACCTGATCGGAG
AGGTCTGGCCCGGGACCACGTTGTTTCCTGACTACACCAACCCCAGCACA
ACAGAGTGGTGGAGCGAGTACTGCCAGCGGTTCCACAACGTAATACCGTA
TGACGGGCTGTGGATCGACATGAACGAACCAAAGAGTTTCATGAACGGGT
CCAACAACGGATGTGAGAGCAACAGGTGGAACTATCCTCCCTTCAAACCT
GCGATTGTCGGCAGAATCATGTACGACCTGACGCTGTGCATGGACGCCCA
GCAGTCCTGGGGGAAGCACTATGACGTGCACAGTCTATACGGACACAGCA
TGGCCATCGCTACCCGATCG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97482gene:BL97482Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97482_cuf2transcript:BL97482_cuf2-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97482_cuf2-E1BL97482_cuf2-E1-1564476830-102419Branchiostoma lanceolatumexon
BL97482_cuf2-E2BL97482_cuf2-E2-1564476830-102417Branchiostoma lanceolatumexon
BL97482_cuf2-E3BL97482_cuf2-E3-1564476830-102415Branchiostoma lanceolatumexon
BL97482_cuf2-E4BL97482_cuf2-E4-1564476830-102413Branchiostoma lanceolatumexon
BL97482_cuf2-E5BL97482_cuf2-E5-1564476830-102411Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000011genomeSc0000011:1615827..1618177 -
Properties
Property NameValue
Transcript idBL97482_cuf2
Biotypeprotein_coding