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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97477_cuf1 >transcript:BL97477_cuf1-protein ID=transcript:BL97477_cuf1-protein|Name=transcript:BL97477_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=180bp
KTFQVQTQHSGRSERSQQSLGAFWLTMDQHRLKREMADSLDVEVSLSPQQ
RPRTRQKLIPWLRERVNSGQVPGVSWQDEARQMVKILWTRKSQHDYNVDQ
DGAIFKEWAVHTGRYTEGADKPDPSRWKTNFRCAMNKSTEAKYLRDQSQE
QGDNPYRLYRLLSPPSTGKRFRITSFFGYV Run BLAST on NCBI mRNA from alignment at Sc0000011:4512133..4515346- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97477_cuf1 ID=transcript:BL97477_cuf1|Name=transcript:BL97477_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=3214bp|location=Sequence derived from alignment at Sc0000011:4512133..4515346- (Branchiostoma lanceolatum)
GCAAAACTTTTCAAGTTCAGACGCAGCATTCCGGGCGTAGTGAACGTTCT
CAGCAGAGCCTCGGCGCATTTTGGTGAGTTTTTTTTGCTCTTCCAAGTTT
CTGTTCAAGATGTTTCAATGGGGGAGGAGGGTAGATGTGAGTGTCTGTGA
GGATAATACCGGTCAAAATAAAACTTGCGGCATCAGAAATCTGTCGGTCA
AATGTAAACTAGGTTCAAATGACATTTTGCGGTTTGAACTGGAATTGTAG
TCATGTGCGGAGAACTTGGTGAATGCCTCACTGCGGTTGTGCTGTGGTCC
CTGTAAACCACATTCTGATGTTCGAGAAAATTCTTCAATTGACGCAGAGA
AATCTCAACAACCCATACAAAAAATCGTGTACTTCATGCATATGTACTTG
TCAATCAAAACCTTCGGTAGAACCGCGTTTCAAATCTAGTTAACGGTTAC
TACTTCAGTTTGTACCGTCAGATAAGAATATTTGTATGCAAACTTCATTG
TGTAACTTGTTGGCACTTGGCCATTGGCATTGTACGGCACTGTGCTGGCC
GGGTTCCAGACCCTGTAAATTCAGAAATGTTCGCGGGGATTTAATTTCGC
GGTAAGGAGAAAAGGGGGTGTTCGCGGTGGTTTTGAGTTCGCGATTGAAA
CAATAGTAGCACTTCAGTCACAGAATGGAAAGACTTTTCGCGGTGGTTTT
AAGTTCGCGGTAAAGAGTTCACCGCAAAAACCACGAACATAAAACCACCC
CGAACATTTCTGCATTTACAGTACTTGGTTTGTGGTTTGTGGCCAACGCT
ATCATGCCTCATGAAATTTTGAGTAGACTTAGCTCTGTGACCATAAGCTC
CTTACCGCTGAGTGGTGTTGTAACCGGACCACCGAACGTTTCTACTTTCA
CCTTGGAAGTAGACAAAGTTCAATAGCCCAATTGAGAGCCGTATGGGCAG
TGTGGTAACATTAACGTTGTTATCCACTGTGCCTTTGGCACTGTATTGGA
AGGTGGAGTCCAACCCTCTCTTTACAACGCCTTTCACCTCCCCAACCGAA
GTCAGGTGCTCATTTTACACCTGATTGGAGGGATTAAATGCCTTTCCCAA
TGACACGTACACAACGTCTAGCCAGGACTGCCAGGAAGCGTCCTCTGGAT
GCCGTGCTAGCCTCACCAACCACCCGGCTACTGACGCCGTGCCAAAACAT
GCGGTAAAGGTGGACCCAACCTATCAACAGTCATATCAACATGAAGTTTC
CACTATGAACCGTAGACTTCTTGGCTTTGACATAAAAAAGGTGTTAACAG
CAAAGTCTTAGACATGACGTCACCATGCGCAACTACTATGCGACACTCCA
GCTATTTACAGACGATATAGAAAGTTTGTCAACAAGTACTTGAAAGTTTT
GGGGACTCCCCAGCGCCCACGTGCACAACTTTAGGTTTGGACTTAAGCGA
TGTAATGGTGATCGTTCTGCAGGCTCACAATGGACCAGCACAGGTTGAAG
CGAGAAATGGCAGACTCCTTAGACGTGGAGGTGAGCCTGTCTCCCCAGCA
GAGGCCGCGGACTCGGCAGAAGCTGATCCCGTGGCTCCGGGAGCGGGTCA
ACTCGGGCCAGGTCCCCGGCGTGTCCTGGCAGGACGAGGCGAGACAAATG
GTCAAGATCCTGTGGACTCGGAAAAGCCAGCATGACTACAACGTGGATCA
AGACGGCGCGATATTCAAGGTACGTTCTTTTGTCTGTGTGCTTTTGGTTT
GTTTTTCTGTTTTGCCAGCTTCAAACTTGTTGAAGTATTTTGCCAACAAG
ATCGCTTCTTGGTCACGGCTGGCAAACATGGTAGGTCAACATAGCACCGC
GTTACATGTCCACTTATGGTAACTGATCTTTTTTTCAACATTGCGTTTCT
GTGAGTGGCTAATCTTCTGTCTGTGCACTTGTCTGTCAATGTTTTGTTAA
TGAATGTTCATCGTGACAGAGATAGTTTCAGGGGACAACTTATTCAGTGA
GTCAAACATTAGCATTGCACAGAGAACAGGGGGCGTTAAAAGTTTCGCGT
GAGGAGGGGGGTGGGGTGCAAGCACATTTCCTGGTCATTGAAAAGTCATG
GGTCTCTTACAGGTACACATGGTGCCCACACATTTCAAAGTGGACCACCT
TGCACCATTTCAACACACCCCCCTCCCCCACACAATCTTTGATGGCAAAC
ATTTCCCCTATTTTTTTTCTTGCTTGTTAGTCACCGTGCGCGTAGGCGTG
TCGAGTTGTTGATGTAATATAACTGCCGCCACAACAACGACATGAAACTT
TGCACCTGATCTTCATGAGTCACAAACACGTTACATACATGTCTGTCCCT
AGGCCTCACCGTCTACATGTAAATCACACCTATTTTTACATTAAAGTCGC
GGTCACTTTCGTCGTAGACCGTATTACAATTTTGATGTCGTAGAATTTTC
AAGCAGGCTGTGACAGAACCAGCCGCCGACAAGGATCTAAGACAGTCTTT
TCTGTAACAAGACAGCTTAAATTTTGTACGAAACATACACGACAATCCCT
AGAATGCCTTCAGTTTGCGATCGTGCGACAATGGTACGATTAATATCGTC
ACACGATGACTGTGGCCGGGCCCTAAACTTGCTTTACCACTGCAGCCGTG
CCCCAAACTACATGTGTACATGTACTACTACTAGACAAACACCAGGCCGC
GGCACAACAAAAGAACATACTTTGACCTGAACGTCACAGGTCACAGCGCA
GCACAACACATACACTGTCCTGTAATCATGTCTCTGACTGGAGACGCTGC
GTACTTTCAACAGGAGTGGGCGGTGCACACCGGCAGGTACACCGAAGGAG
CGGACAAACCCGACCCGTCCCGGTGGAAGACCAACTTCAGGTGCGCCATG
AACAAGTCCACCGAGGCTAAGTACCTGCGTGATCAGAGTCAGGAGCAAGG
CGACAACCCTTACCGGCTGTATCGCCTTCTCTCTCCACCGTCCACAGGTA
AGAGGTTTAGAATTACTTCCTTCTTTGGCTACGTTTAAATGTTCATTCTC
TTCAAACTTTGCAATGTCCCTCTATACCTTTCTTAGACGGGTAACGTTAC
ATGCTGATTTGAACGCATGTCTTCTCGGCTGTCAAGGTGCCCGAGTTCTT
ACTTAACTTAATGCAGTAAGAATAGCAGTAAACTAGCTGGTGTGTTGCGC
TATTTTGGCTATGT Coding sequence (CDS) from alignment at Sc0000011:4512133..4515346- >transcript:BL97477_cuf1 ID=transcript:BL97477_cuf1|Name=transcript:BL97477_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=1629bp|location=Sequence derived from alignment at Sc0000011:4512133..4515346- (Branchiostoma lanceolatum)
AAAACTTTTCAAGTTCAGACGCAGCATTCCGGGCGTAGTGAACGTTCTCA
GCAGAGCCTCGGCGCATTTTGGCTCACAATGGACCAGCACAGGTTGAAGC
GAGAAATGGCAGACTCCTTAGACGTGGAGGTGAGCCTGTCTCCCCAGCAG
AGGCCGCGGACTCGGCAGAAGCTGATCCCGTGGCTCCGGGAGCGGGTCAA
CTCGGGCCAGGTCCCCGGCGTGTCCTGGCAGGACGAGGCGAGACAAATGG
TCAAGATCCTGTGGACTCGGAAAAGCCAGCATGACTACAACGTGGATCAA
GACGGCGCGATATTCAAGGAGTGGGCGGTGCACACCGGCAGGTACACCGA
AGGAGCGGACAAACCCGACCCGTCCCGGTGGAAGACCAACTTCAGGTGCG
CCATGAACAAGTCCACCGAGGCTAAGTACCTGCGTGATCAGAGTCAGGAG
CAAGGCGACAACCCTTACCGGCTGTATCGCCTTCTCTCTCCACCGTCCAC
AGGTAAGAGGTTTAGAATTACTTCCTTCTTTGGCTACGTTTAAAAAACTT
TTCAAGTTCAGACGCAGCATTCCGGGCGTAGTGAACGTTCTCAGCAGAGC
CTCGGCGCATTTTGGCTCACAATGGACCAGCACAGGTTGAAGCGAGAAAT
GGCAGACTCCTTAGACGTGGAGGTGAGCCTGTCTCCCCAGCAGAGGCCGC
GGACTCGGCAGAAGCTGATCCCGTGGCTCCGGGAGCGGGTCAACTCGGGC
CAGGTCCCCGGCGTGTCCTGGCAGGACGAGGCGAGACAAATGGTCAAGAT
CCTGTGGACTCGGAAAAGCCAGCATGACTACAACGTGGATCAAGACGGCG
CGATATTCAAGGAGTGGGCGGTGCACACCGGCAGGTACACCGAAGGAGCG
GACAAACCCGACCCGTCCCGGTGGAAGACCAACTTCAGGTGCGCCATGAA
CAAGTCCACCGAGGCTAAGTACCTGCGTGATCAGAGTCAGGAGCAAGGCG
ACAACCCTTACCGGCTGTATCGCCTTCTCTCTCCACCGTCCACAGGTAAG
AGGTTTAGAATTACTTCCTTCTTTGGCTACGTTTAAAAAACTTTTCAAGT
TCAGACGCAGCATTCCGGGCGTAGTGAACGTTCTCAGCAGAGCCTCGGCG
CATTTTGGCTCACAATGGACCAGCACAGGTTGAAGCGAGAAATGGCAGAC
TCCTTAGACGTGGAGGTGAGCCTGTCTCCCCAGCAGAGGCCGCGGACTCG
GCAGAAGCTGATCCCGTGGCTCCGGGAGCGGGTCAACTCGGGCCAGGTCC
CCGGCGTGTCCTGGCAGGACGAGGCGAGACAAATGGTCAAGATCCTGTGG
ACTCGGAAAAGCCAGCATGACTACAACGTGGATCAAGACGGCGCGATATT
CAAGGAGTGGGCGGTGCACACCGGCAGGTACACCGAAGGAGCGGACAAAC
CCGACCCGTCCCGGTGGAAGACCAACTTCAGGTGCGCCATGAACAAGTCC
ACCGAGGCTAAGTACCTGCGTGATCAGAGTCAGGAGCAAGGCGACAACCC
TTACCGGCTGTATCGCCTTCTCTCTCCACCGTCCACAGGTAAGAGGTTTA
GAATTACTTCCTTCTTTGGCTACGTTTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000011 | genome | Sc0000011:4512133..4515346 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97477_cuf1 |
| Biotype | protein_coding |
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