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transcript:BL97477_cuf1 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97477_cuf1
Unique Nametranscript:BL97477_cuf1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97477_cuf1

>transcript:BL97477_cuf1-protein ID=transcript:BL97477_cuf1-protein|Name=transcript:BL97477_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=180bp
KTFQVQTQHSGRSERSQQSLGAFWLTMDQHRLKREMADSLDVEVSLSPQQ
RPRTRQKLIPWLRERVNSGQVPGVSWQDEARQMVKILWTRKSQHDYNVDQ
DGAIFKEWAVHTGRYTEGADKPDPSRWKTNFRCAMNKSTEAKYLRDQSQE
QGDNPYRLYRLLSPPSTGKRFRITSFFGYV
Run BLAST on NCBI

mRNA from alignment at Sc0000011:4512133..4515346-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97477_cuf1 ID=transcript:BL97477_cuf1|Name=transcript:BL97477_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=3214bp|location=Sequence derived from alignment at Sc0000011:4512133..4515346- (Branchiostoma lanceolatum)
GCAAAACTTTTCAAGTTCAGACGCAGCATTCCGGGCGTAGTGAACGTTCT CAGCAGAGCCTCGGCGCATTTTGGTGAGTTTTTTTTGCTCTTCCAAGTTT CTGTTCAAGATGTTTCAATGGGGGAGGAGGGTAGATGTGAGTGTCTGTGA GGATAATACCGGTCAAAATAAAACTTGCGGCATCAGAAATCTGTCGGTCA AATGTAAACTAGGTTCAAATGACATTTTGCGGTTTGAACTGGAATTGTAG TCATGTGCGGAGAACTTGGTGAATGCCTCACTGCGGTTGTGCTGTGGTCC CTGTAAACCACATTCTGATGTTCGAGAAAATTCTTCAATTGACGCAGAGA AATCTCAACAACCCATACAAAAAATCGTGTACTTCATGCATATGTACTTG TCAATCAAAACCTTCGGTAGAACCGCGTTTCAAATCTAGTTAACGGTTAC TACTTCAGTTTGTACCGTCAGATAAGAATATTTGTATGCAAACTTCATTG TGTAACTTGTTGGCACTTGGCCATTGGCATTGTACGGCACTGTGCTGGCC GGGTTCCAGACCCTGTAAATTCAGAAATGTTCGCGGGGATTTAATTTCGC GGTAAGGAGAAAAGGGGGTGTTCGCGGTGGTTTTGAGTTCGCGATTGAAA CAATAGTAGCACTTCAGTCACAGAATGGAAAGACTTTTCGCGGTGGTTTT AAGTTCGCGGTAAAGAGTTCACCGCAAAAACCACGAACATAAAACCACCC CGAACATTTCTGCATTTACAGTACTTGGTTTGTGGTTTGTGGCCAACGCT ATCATGCCTCATGAAATTTTGAGTAGACTTAGCTCTGTGACCATAAGCTC CTTACCGCTGAGTGGTGTTGTAACCGGACCACCGAACGTTTCTACTTTCA CCTTGGAAGTAGACAAAGTTCAATAGCCCAATTGAGAGCCGTATGGGCAG TGTGGTAACATTAACGTTGTTATCCACTGTGCCTTTGGCACTGTATTGGA AGGTGGAGTCCAACCCTCTCTTTACAACGCCTTTCACCTCCCCAACCGAA GTCAGGTGCTCATTTTACACCTGATTGGAGGGATTAAATGCCTTTCCCAA TGACACGTACACAACGTCTAGCCAGGACTGCCAGGAAGCGTCCTCTGGAT GCCGTGCTAGCCTCACCAACCACCCGGCTACTGACGCCGTGCCAAAACAT GCGGTAAAGGTGGACCCAACCTATCAACAGTCATATCAACATGAAGTTTC CACTATGAACCGTAGACTTCTTGGCTTTGACATAAAAAAGGTGTTAACAG CAAAGTCTTAGACATGACGTCACCATGCGCAACTACTATGCGACACTCCA GCTATTTACAGACGATATAGAAAGTTTGTCAACAAGTACTTGAAAGTTTT GGGGACTCCCCAGCGCCCACGTGCACAACTTTAGGTTTGGACTTAAGCGA TGTAATGGTGATCGTTCTGCAGGCTCACAATGGACCAGCACAGGTTGAAG CGAGAAATGGCAGACTCCTTAGACGTGGAGGTGAGCCTGTCTCCCCAGCA GAGGCCGCGGACTCGGCAGAAGCTGATCCCGTGGCTCCGGGAGCGGGTCA ACTCGGGCCAGGTCCCCGGCGTGTCCTGGCAGGACGAGGCGAGACAAATG GTCAAGATCCTGTGGACTCGGAAAAGCCAGCATGACTACAACGTGGATCA AGACGGCGCGATATTCAAGGTACGTTCTTTTGTCTGTGTGCTTTTGGTTT GTTTTTCTGTTTTGCCAGCTTCAAACTTGTTGAAGTATTTTGCCAACAAG ATCGCTTCTTGGTCACGGCTGGCAAACATGGTAGGTCAACATAGCACCGC GTTACATGTCCACTTATGGTAACTGATCTTTTTTTCAACATTGCGTTTCT GTGAGTGGCTAATCTTCTGTCTGTGCACTTGTCTGTCAATGTTTTGTTAA TGAATGTTCATCGTGACAGAGATAGTTTCAGGGGACAACTTATTCAGTGA GTCAAACATTAGCATTGCACAGAGAACAGGGGGCGTTAAAAGTTTCGCGT GAGGAGGGGGGTGGGGTGCAAGCACATTTCCTGGTCATTGAAAAGTCATG GGTCTCTTACAGGTACACATGGTGCCCACACATTTCAAAGTGGACCACCT TGCACCATTTCAACACACCCCCCTCCCCCACACAATCTTTGATGGCAAAC ATTTCCCCTATTTTTTTTCTTGCTTGTTAGTCACCGTGCGCGTAGGCGTG TCGAGTTGTTGATGTAATATAACTGCCGCCACAACAACGACATGAAACTT TGCACCTGATCTTCATGAGTCACAAACACGTTACATACATGTCTGTCCCT AGGCCTCACCGTCTACATGTAAATCACACCTATTTTTACATTAAAGTCGC GGTCACTTTCGTCGTAGACCGTATTACAATTTTGATGTCGTAGAATTTTC AAGCAGGCTGTGACAGAACCAGCCGCCGACAAGGATCTAAGACAGTCTTT TCTGTAACAAGACAGCTTAAATTTTGTACGAAACATACACGACAATCCCT AGAATGCCTTCAGTTTGCGATCGTGCGACAATGGTACGATTAATATCGTC ACACGATGACTGTGGCCGGGCCCTAAACTTGCTTTACCACTGCAGCCGTG CCCCAAACTACATGTGTACATGTACTACTACTAGACAAACACCAGGCCGC GGCACAACAAAAGAACATACTTTGACCTGAACGTCACAGGTCACAGCGCA GCACAACACATACACTGTCCTGTAATCATGTCTCTGACTGGAGACGCTGC GTACTTTCAACAGGAGTGGGCGGTGCACACCGGCAGGTACACCGAAGGAG CGGACAAACCCGACCCGTCCCGGTGGAAGACCAACTTCAGGTGCGCCATG AACAAGTCCACCGAGGCTAAGTACCTGCGTGATCAGAGTCAGGAGCAAGG CGACAACCCTTACCGGCTGTATCGCCTTCTCTCTCCACCGTCCACAGGTA AGAGGTTTAGAATTACTTCCTTCTTTGGCTACGTTTAAATGTTCATTCTC TTCAAACTTTGCAATGTCCCTCTATACCTTTCTTAGACGGGTAACGTTAC ATGCTGATTTGAACGCATGTCTTCTCGGCTGTCAAGGTGCCCGAGTTCTT ACTTAACTTAATGCAGTAAGAATAGCAGTAAACTAGCTGGTGTGTTGCGC TATTTTGGCTATGT

Coding sequence (CDS) from alignment at Sc0000011:4512133..4515346-

>transcript:BL97477_cuf1 ID=transcript:BL97477_cuf1|Name=transcript:BL97477_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=1629bp|location=Sequence derived from alignment at Sc0000011:4512133..4515346- (Branchiostoma lanceolatum)
AAAACTTTTCAAGTTCAGACGCAGCATTCCGGGCGTAGTGAACGTTCTCA
GCAGAGCCTCGGCGCATTTTGGCTCACAATGGACCAGCACAGGTTGAAGC
GAGAAATGGCAGACTCCTTAGACGTGGAGGTGAGCCTGTCTCCCCAGCAG
AGGCCGCGGACTCGGCAGAAGCTGATCCCGTGGCTCCGGGAGCGGGTCAA
CTCGGGCCAGGTCCCCGGCGTGTCCTGGCAGGACGAGGCGAGACAAATGG
TCAAGATCCTGTGGACTCGGAAAAGCCAGCATGACTACAACGTGGATCAA
GACGGCGCGATATTCAAGGAGTGGGCGGTGCACACCGGCAGGTACACCGA
AGGAGCGGACAAACCCGACCCGTCCCGGTGGAAGACCAACTTCAGGTGCG
CCATGAACAAGTCCACCGAGGCTAAGTACCTGCGTGATCAGAGTCAGGAG
CAAGGCGACAACCCTTACCGGCTGTATCGCCTTCTCTCTCCACCGTCCAC
AGGTAAGAGGTTTAGAATTACTTCCTTCTTTGGCTACGTTTAAAAAACTT
TTCAAGTTCAGACGCAGCATTCCGGGCGTAGTGAACGTTCTCAGCAGAGC
CTCGGCGCATTTTGGCTCACAATGGACCAGCACAGGTTGAAGCGAGAAAT
GGCAGACTCCTTAGACGTGGAGGTGAGCCTGTCTCCCCAGCAGAGGCCGC
GGACTCGGCAGAAGCTGATCCCGTGGCTCCGGGAGCGGGTCAACTCGGGC
CAGGTCCCCGGCGTGTCCTGGCAGGACGAGGCGAGACAAATGGTCAAGAT
CCTGTGGACTCGGAAAAGCCAGCATGACTACAACGTGGATCAAGACGGCG
CGATATTCAAGGAGTGGGCGGTGCACACCGGCAGGTACACCGAAGGAGCG
GACAAACCCGACCCGTCCCGGTGGAAGACCAACTTCAGGTGCGCCATGAA
CAAGTCCACCGAGGCTAAGTACCTGCGTGATCAGAGTCAGGAGCAAGGCG
ACAACCCTTACCGGCTGTATCGCCTTCTCTCTCCACCGTCCACAGGTAAG
AGGTTTAGAATTACTTCCTTCTTTGGCTACGTTTAAAAAACTTTTCAAGT
TCAGACGCAGCATTCCGGGCGTAGTGAACGTTCTCAGCAGAGCCTCGGCG
CATTTTGGCTCACAATGGACCAGCACAGGTTGAAGCGAGAAATGGCAGAC
TCCTTAGACGTGGAGGTGAGCCTGTCTCCCCAGCAGAGGCCGCGGACTCG
GCAGAAGCTGATCCCGTGGCTCCGGGAGCGGGTCAACTCGGGCCAGGTCC
CCGGCGTGTCCTGGCAGGACGAGGCGAGACAAATGGTCAAGATCCTGTGG
ACTCGGAAAAGCCAGCATGACTACAACGTGGATCAAGACGGCGCGATATT
CAAGGAGTGGGCGGTGCACACCGGCAGGTACACCGAAGGAGCGGACAAAC
CCGACCCGTCCCGGTGGAAGACCAACTTCAGGTGCGCCATGAACAAGTCC
ACCGAGGCTAAGTACCTGCGTGATCAGAGTCAGGAGCAAGGCGACAACCC
TTACCGGCTGTATCGCCTTCTCTCTCCACCGTCCACAGGTAAGAGGTTTA
GAATTACTTCCTTCTTTGGCTACGTTTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97477gene:BL97477Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97477_cuf1transcript:BL97477_cuf1-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97477_cuf1-E1BL97477_cuf1-E1-1564476830-105163Branchiostoma lanceolatumexon
BL97477_cuf1-E2BL97477_cuf1-E2-1564476830-105160Branchiostoma lanceolatumexon
BL97477_cuf1-E3BL97477_cuf1-E3-1564476830-105158Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000011genomeSc0000011:4512133..4515346 -
Properties
Property NameValue
Transcript idBL97477_cuf1
Biotypeprotein_coding