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transcript:BL97471_cuf1 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97471_cuf1
Unique Nametranscript:BL97471_cuf1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97471_cuf1

>transcript:BL97471_cuf1-protein ID=transcript:BL97471_cuf1-protein|Name=transcript:BL97471_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=208bp
PYSFRFSPFKSESPEGMDVIETQDLKPIVRRKIQVSAKWRKVDQDICIIH
IFRNGDSLTPPSKLLFKKAWLQNKCTWDVLLEMVQEKVSLDSGAIRKLYR
LDGKPVRDVADIQHDSYYIAVGNEGLKRVEYGQAPKQGFYSSTKRNTELP
PLEFRQKQKKEGYARKNKESPREETHRKQETHRSDGHRTRREEPAARRTI
TYAPAKRK
Run BLAST on NCBI

mRNA from alignment at Sc0000011:1636410..1641905+

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97471_cuf1 ID=transcript:BL97471_cuf1|Name=transcript:BL97471_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=5496bp|location=Sequence derived from alignment at Sc0000011:1636410..1641905+ (Branchiostoma lanceolatum)
ACCTTATTCTTTCCGCTTCTCTCCGTTTAAGTCCGAATCTCCTGAAGGGA TGGATGTAATAGAGGTAAGAGCTGTCGTTTGCTGGGGAACATTATTGGCT TGACACCACAGTTTTAGAGTCTGGAATAATCTACATGTAGAGGTGTGGTT TTGTCTCTTTTCTGTACGTCTTTTTCATTGTTTTGTTTGTCGCATTTTTG CAGTTAATGCCTTGTTTTAAGACTGTAGGCAAACATACCAACGAGGAGTA TGTCCTTTCAAAATTGATGGTACTCTTATTGGAAGACATTACGATGTCGT CTCCCCAAGCATTTGCATTAGGAGTAGGTTAGCCTTAGTGAGAAACGAAA CACAATTATGCAAAATTCCAGTTTAAAGGCGCACAGAACAAGGAACAACG AAAGACGTACAAAAATGAGACAACCTCCAGTCTGCTGGAAGGTTATTCCA ACTAAATTGTCACGCTGGTGTGGCATTAATGCTCGATGAAACAGCACAGT AATAGTGTAATCGTTAAGAACACCATCTCACAAGTTACTCACCAATTAGT TTACAACGTCTGGTGGTTCGAATTGTTCGATACACGTCGTCGCTCACCAA TGTGGTTGTAGGCACAATCATCTCACACTCTCTTGAGAATGAATTAGTGC AAAAACAGGTACACCAACCACCATGATCACGGGAGACTTTGCTAACTTTT ACACAACTGTTTTCTAATTACCCCCATCATTCTGATGGGTGACGTAGCGG CGGCAAACGTCTTGTAAACGTGAGCCACACAGACATCGTACCGATAAAAA ATGTAATCCGCTTAAAGACGAGCAAACACCAATGATAGTATAGTAAAAAT GATAAGTTGATTAAATGACAGGCTTTTAATTTGGGGCTAATTGAAGGCTA ATCAAAACCTAATTGCAAGTAACATTCATTTAAAGACAAACCAATGTTGG CAATAGAACCATGTGGAAACATCGAGCTATTTTAGCTACTTCTGAATCTA ATACCAGTTGACTAGATCTCGAACTCTTGTATAATGTTATAGATCTAGAT GACTGATGACTAAGCACGGCGGATATTAGAGCGCCAGCCGTGAAACCTGT TAACGTCACCGCTGTCATCACGAATCAGGGACTAGAAGCCGCACTAGTTT AGCCTCCGTTACAGACTCCGCCGAGCCATATATATCATTTCAACCGCGCA CACATTCCTGATTGGTTTCGTTTTATTAAATCATTCGCACTTTACATCTG TACAGTCTTGCGGTAAACAGTGGATACCTAGTTGGCTGAATTGCGCTGTT GACAATACTAAACAATGAATTTTTCGACAATACGAATAGACAAGGCAGGC ATTTGCTCTTAAAGGATCTGTTGTATCGCCAATGCTAACGTGGTCGAGAA CAAGAATAGCAGCCCTATTGTAACGAAGGCAAACATTGATCCGCACCCAG TGTGTACTCCCATAACGTGACATAGTCCTCGCGGACAGTCTGGTTTCCAG GCTATTGTAACGAAGGCTAACATTTGTCAATACGCACGTCGTGTGCACGC TCAGAACTAGATGTGTACCCTGGAGACAGTCTGGCTTCCAGGCTATTGTA ACGAAGGCTAGCATTGGTTAATGCGCACCTCGCATGCACACTCACATCGA GATGTGTGCCCTGGAGAAAGTCTGGCTTATAGGCTATTGTAACGAAGGCA AACATTGCCTAATCCGCACCCAGTGTGTATACTCATAAAGTGATACAGTC TTCGAGGACAGTCTGGTTTCCAGGCTATTGTTCCAAGGCTAACATCGGTT GATACGCATGTCGTGTGAACATGCACTCAGAATGGAATATAGTCCTTAAG ACAGTCTGGCTTCCAGGCTATTGTAACGAAGGCTGATGCACACACGTTGT GCACAATCAGAACGGAATTTAGGTCTCAAGACAGTCTGGCTTGGAGGCTA TTGTAACTAAGGCTAATGCGCACACGGTGTGCACAATCATAACGGAATAT AGGCCTCAAGACAGTCTGGTTTCCAGGCTATTGTAACGAAGGCTAACTAA GGCTGATGCGCACACCGTGGGCACAATCAGAGCGGAATTTAGGCTTTAAG ACAGTCTTGATTTCAGGCTATCGTCACTAAGGCTAATGCGCACACGTTGT GCAAAATCAGAACGGAATTTAGGCCTTAAGACAGTCTGGCTTGGAGGCTA TTGTAACGGAGGCTAATGCGCACGTCGTGTGCACACGCAGTGGTAGATAA TTACCACGCAGCCCCGGGTTGGGTCTGGACGTGCTGGGTCATAACAAGTG ATTCTGATCGAGCTGGCTGGATGTTTGTTACGTTTGCTGGATAAAAAATC AGCAGGTGCGGGCGACATGGCGCGCGGAAAAGCACAGGTGAAAGCTGGTG GATTTTGGTGTAAATTTGTCGGTTGGAACAGAAATCGGTTTTGGCTGTCT CACGCACAATCTCACGGTGGCTCTGCTATATGTCGATGAAGTCCTCTGAT CACTTGATTAGCTGTGACAATATTTTGATAGCATATTATTACAGTTATAT TTTTCTTCAAAAATTACGTGATACCCTTGCCTTTCATACTTGAGTATAGA CTGCTACTGTATAAGTCCAAGGAGGATTCAGCGTAGGTAGTCGGAAAATC TAGTACCTCTTATTTCGTGTATGCACACGGCAAACGTCAATCCCACCGGC TTCTTAATTTGGCAATGTTTTGATAGCTTGATATTCATTTATATCATTTG AACCAAAATTACGCAATCTTTTAGGTAATCCATCTATACTTGCCTTGAGG AGCCGAATTCAAATGATAACGGTATAGGTATCGATTTTGTCGGTTAGAGT AAGGTGAATTTAGTGTTTATATGCCTTTTTTTCACAGACGCAGGATCTCA AGCCGATCGTCAGGCGAAAGATTCAGGTGTCGGCAAAATGGCGGAAGGTC GATCAGGACATCTGCATCATACAGTGAGTGGTTTGCTTGTTTGTTTGTTC ACATTGGGCAGTCAGTTGTTTTGTGCGGCAATTTGGCCTGTCTATCTCTG TGTCACTTTCTGTGTGTGTTTCTCGGCGCGCGCGCGTGTGTGCGTGTATA TGTGTGAGTGAGTGTGTGTGTGCGTGTGAGGGAGAGAGAGAGAGAGAGAG AGAGAGAGAGAGAGAGAGAGAGAGAATGAATAAACGTCTCTCTCTCTCTG CATGTGTCTAGGTGAGGGGGTAAAGTTTGTCATCTCTAATAGTCTCGTGG CCGGAATAAAGGGGGGCGAGGCTTGGGCCACTTAGCTGCAATTTCTGTTT TTGATTCACAAGATGTTTTTTTTTTCAAATAGAAGCGATCCTGGCATAAA ATAAATGGTTGTCAGACATCCTTCTCTGTTGGTTTGTTGGCTTAGTTTCA ACCACCTGTTGCTAGCGCGGCTGTCTGTTATAAACAACAAAGTCGACGTG CTGATAATCATCTCCTTCCGTCTCCATGGTAACCGGATTTTGATATCAGA CAGTTGTCCCCGTTGCTAGGCGACGTCTTAGTTGCTAGGCGACTATGCGA TGAAGAAGAGCTAATCCGTAGAGTTAAATGAAGACCACAGGAGGATGAGA ATGGATCGGCGACAGCTTTGTGCGAGCGTGATTACGCTTTGAGTTGCAGA TGCGCTCCGTCTGCACCATTCATTACCCTCCTCAAGAGCGTTGTGTTTTC GGTAGCATGTGTAGGTCTGCTTGTAGACTGTTGAATCAATTGAGAAGCTA TTTCTGTCCTCCTCTGTCCAAGAGAAAAATAACATGTTGGCTCCCTTGCG GCTTTCTACGGTACAACAGTGGGGCTGTCGTCCTTTGCATCTTATGTCCT AACGTGTCTTGGTTTTCTAGGGGGAGGATTTGTTGTTGTCCAAAGAAGAA AATATACGACATTGCGCCTTACACTCCCGGCACTTTTTTAAGCTGCTATC TTTTAAGGGAATATTTATTACTTAAGCAAGTGTTTTTTTCTCATCACCTT TTTAGCATATTCCGAAACGGCGACTCCCTGACGCCGCCGTCCAAGCTGCT GTTCAAGAAAGCGTGGCTGCAGAACAAGTGCACGTGGGACGTCCTGCTGG AGATGGTGCAGGAGAAGGTCTCACTGGACTCGGGAGCTATCAGAAAGTAC GTGAGCAATCAATAGATTTATCGATCAGACTGCTTAATTGATTAATTTAT TGATTGATTAATTGATTAAATAATGATGTGCATCATCGGTTGAGGATGAT TAATGATAATAAAATCAAAGGTGATCCAAAAATACAATATATATATATAT ATATATATAGGTATATATACACTTCTTTTCGTCAGTGACACTGCATTGTA CTTACTGCATATAAGCAATGCAGTAAATACAATGCAGTGTCACTGACGAA AAGTAGTGTGTGCTACTTGAAACGTCCGACCGTTTCCAAAACCATATCTA ACTGCTATTTGGCGATTTCAGTAAATATTAAGTACCCAGTTGAGGGGTGG CTTAACTGGAAGCTAAGGGGCAGCAAATCTTTTTGTTGCTTCGATGTACG TGTAAAGTAGCCTGGGTGCCATCCTAGATTACTACCAGGGCTCATGATTT CAACGCAGGAGCTCCGGGAATACTCGAGGATGGCACCCAGGCTACGCGTA AAGTGTCCCATGAAGTTGACACTGTCTATTCATATCTTTCCTTTCCCCAG ATTGTACCGTTTAGACGGGAAGCCGGTGCGGGATGTGGCGGATATCCAGC ACGACTCCTACTACATCGCGGTGGGGAACGAGGGGCTGAAGAGGGTAGAG TACGGACAGGCGCCCAAACAGGGCTTCTACTCCTCAACCAAGAGGAACAC GTAAGTTCTTAATGTCTCATCTGGCAATGTCAAACCTGAAAAATGCGTGC GACCTAATCGCTAACATTGTGGCAACCTCTGAAAGAGTCCTGCTGAGCCC GACAATTGTCAGTTTTCACATGCTTGTTCTGTATACTAGCCCTGACAATT GTCGGTTTGCAATGCTTGTTCTGTATGCTAGCCCTAATTGTCGGGTTGAG GGTATTTCTAGAATGCGTATGTTGCACCCGCGTGGTTGTTCTAAAGTGAA CTAAAAATGGGCAATATCAAACTAGTACCCTTTGTTTCAAAGGACCATAG ACACTCTTATACAGTGAGTTGCCGCCGTTGGAGTTCGGCAGAAGCAGAGG AAGGAGGAGGGCTTAGTGCAAGTTTAGCCATAATTGAAATATGAGCAAGG TGCGTTGTAAGTTGATTCGTTGTGTGGATATGATAAGATAAACAATGGGC ATTCTTCTCCAGTGAGTTGCCGCCGCTTGAGTTCCGGCAGAAGCAGAAGA AGGAGGGCTACGCGCGGAAGAACAAGGAGAGCCCAAGAGAGGAGACGCAC CGCAAGCAGGAGACGCACCGGTCGGACGGGCACCGCACCCGGCGCGAGGA GCCGGCTGCCCGCAGGACCATCACCTACGCGCCCGCTAAGCGGAAG

Coding sequence (CDS) from alignment at Sc0000011:1636410..1641905+

>transcript:BL97471_cuf1 ID=transcript:BL97471_cuf1|Name=transcript:BL97471_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=3120bp|location=Sequence derived from alignment at Sc0000011:1636410..1641905+ (Branchiostoma lanceolatum)
CCTTATTCTTTCCGCTTCTCTCCGTTTAAGTCCGAATCTCCTGAAGGGAT
GGATGTAATAGAGACGCAGGATCTCAAGCCGATCGTCAGGCGAAAGATTC
AGGTGTCGGCAAAATGGCGGAAGGTCGATCAGGACATCTGCATCATACAC
ATATTCCGAAACGGCGACTCCCTGACGCCGCCGTCCAAGCTGCTGTTCAA
GAAAGCGTGGCTGCAGAACAAGTGCACGTGGGACGTCCTGCTGGAGATGG
TGCAGGAGAAGGTCTCACTGGACTCGGGAGCTATCAGAAAATTGTACCGT
TTAGACGGGAAGCCGGTGCGGGATGTGGCGGATATCCAGCACGACTCCTA
CTACATCGCGGTGGGGAACGAGGGGCTGAAGAGGGTAGAGTACGGACAGG
CGCCCAAACAGGGCTTCTACTCCTCAACCAAGAGGAACACTGAGTTGCCG
CCGCTTGAGTTCCGGCAGAAGCAGAAGAAGGAGGGCTACGCGCGGAAGAA
CAAGGAGAGCCCAAGAGAGGAGACGCACCGCAAGCAGGAGACGCACCGGT
CGGACGGGCACCGCACCCGGCGCGAGGAGCCGGCTGCCCGCAGGACCATC
ACCTACGCGCCCGCTAAGCGGAAGCCTTATTCTTTCCGCTTCTCTCCGTT
TAAGTCCGAATCTCCTGAAGGGATGGATGTAATAGAGACGCAGGATCTCA
AGCCGATCGTCAGGCGAAAGATTCAGGTGTCGGCAAAATGGCGGAAGGTC
GATCAGGACATCTGCATCATACACATATTCCGAAACGGCGACTCCCTGAC
GCCGCCGTCCAAGCTGCTGTTCAAGAAAGCGTGGCTGCAGAACAAGTGCA
CGTGGGACGTCCTGCTGGAGATGGTGCAGGAGAAGGTCTCACTGGACTCG
GGAGCTATCAGAAAATTGTACCGTTTAGACGGGAAGCCGGTGCGGGATGT
GGCGGATATCCAGCACGACTCCTACTACATCGCGGTGGGGAACGAGGGGC
TGAAGAGGGTAGAGTACGGACAGGCGCCCAAACAGGGCTTCTACTCCTCA
ACCAAGAGGAACACTGAGTTGCCGCCGCTTGAGTTCCGGCAGAAGCAGAA
GAAGGAGGGCTACGCGCGGAAGAACAAGGAGAGCCCAAGAGAGGAGACGC
ACCGCAAGCAGGAGACGCACCGGTCGGACGGGCACCGCACCCGGCGCGAG
GAGCCGGCTGCCCGCAGGACCATCACCTACGCGCCCGCTAAGCGGAAGCC
TTATTCTTTCCGCTTCTCTCCGTTTAAGTCCGAATCTCCTGAAGGGATGG
ATGTAATAGAGACGCAGGATCTCAAGCCGATCGTCAGGCGAAAGATTCAG
GTGTCGGCAAAATGGCGGAAGGTCGATCAGGACATCTGCATCATACACAT
ATTCCGAAACGGCGACTCCCTGACGCCGCCGTCCAAGCTGCTGTTCAAGA
AAGCGTGGCTGCAGAACAAGTGCACGTGGGACGTCCTGCTGGAGATGGTG
CAGGAGAAGGTCTCACTGGACTCGGGAGCTATCAGAAAATTGTACCGTTT
AGACGGGAAGCCGGTGCGGGATGTGGCGGATATCCAGCACGACTCCTACT
ACATCGCGGTGGGGAACGAGGGGCTGAAGAGGGTAGAGTACGGACAGGCG
CCCAAACAGGGCTTCTACTCCTCAACCAAGAGGAACACTGAGTTGCCGCC
GCTTGAGTTCCGGCAGAAGCAGAAGAAGGAGGGCTACGCGCGGAAGAACA
AGGAGAGCCCAAGAGAGGAGACGCACCGCAAGCAGGAGACGCACCGGTCG
GACGGGCACCGCACCCGGCGCGAGGAGCCGGCTGCCCGCAGGACCATCAC
CTACGCGCCCGCTAAGCGGAAGCCTTATTCTTTCCGCTTCTCTCCGTTTA
AGTCCGAATCTCCTGAAGGGATGGATGTAATAGAGACGCAGGATCTCAAG
CCGATCGTCAGGCGAAAGATTCAGGTGTCGGCAAAATGGCGGAAGGTCGA
TCAGGACATCTGCATCATACACATATTCCGAAACGGCGACTCCCTGACGC
CGCCGTCCAAGCTGCTGTTCAAGAAAGCGTGGCTGCAGAACAAGTGCACG
TGGGACGTCCTGCTGGAGATGGTGCAGGAGAAGGTCTCACTGGACTCGGG
AGCTATCAGAAAATTGTACCGTTTAGACGGGAAGCCGGTGCGGGATGTGG
CGGATATCCAGCACGACTCCTACTACATCGCGGTGGGGAACGAGGGGCTG
AAGAGGGTAGAGTACGGACAGGCGCCCAAACAGGGCTTCTACTCCTCAAC
CAAGAGGAACACTGAGTTGCCGCCGCTTGAGTTCCGGCAGAAGCAGAAGA
AGGAGGGCTACGCGCGGAAGAACAAGGAGAGCCCAAGAGAGGAGACGCAC
CGCAAGCAGGAGACGCACCGGTCGGACGGGCACCGCACCCGGCGCGAGGA
GCCGGCTGCCCGCAGGACCATCACCTACGCGCCCGCTAAGCGGAAGCCTT
ATTCTTTCCGCTTCTCTCCGTTTAAGTCCGAATCTCCTGAAGGGATGGAT
GTAATAGAGACGCAGGATCTCAAGCCGATCGTCAGGCGAAAGATTCAGGT
GTCGGCAAAATGGCGGAAGGTCGATCAGGACATCTGCATCATACACATAT
TCCGAAACGGCGACTCCCTGACGCCGCCGTCCAAGCTGCTGTTCAAGAAA
GCGTGGCTGCAGAACAAGTGCACGTGGGACGTCCTGCTGGAGATGGTGCA
GGAGAAGGTCTCACTGGACTCGGGAGCTATCAGAAAATTGTACCGTTTAG
ACGGGAAGCCGGTGCGGGATGTGGCGGATATCCAGCACGACTCCTACTAC
ATCGCGGTGGGGAACGAGGGGCTGAAGAGGGTAGAGTACGGACAGGCGCC
CAAACAGGGCTTCTACTCCTCAACCAAGAGGAACACTGAGTTGCCGCCGC
TTGAGTTCCGGCAGAAGCAGAAGAAGGAGGGCTACGCGCGGAAGAACAAG
GAGAGCCCAAGAGAGGAGACGCACCGCAAGCAGGAGACGCACCGGTCGGA
CGGGCACCGCACCCGGCGCGAGGAGCCGGCTGCCCGCAGGACCATCACCT
ACGCGCCCGCTAAGCGGAAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97471gene:BL97471Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97471_cuf1transcript:BL97471_cuf1-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97471_cuf1-E1BL97471_cuf1-E1-1564476830-102440Branchiostoma lanceolatumexon
BL97471_cuf1-E2BL97471_cuf1-E2-1564476830-102442Branchiostoma lanceolatumexon
BL97471_cuf1-E3BL97471_cuf1-E3-1564476830-102444Branchiostoma lanceolatumexon
BL97471_cuf1-E4BL97471_cuf1-E4-1564476830-102446Branchiostoma lanceolatumexon
BL97471_cuf1-E5BL97471_cuf1-E5-1564476830-102448Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000011genomeSc0000011:1636410..1641905 +
Properties
Property NameValue
Transcript idBL97471_cuf1
Biotypeprotein_coding