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transcript:BL97467_cuf8 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97467_cuf8
Unique Nametranscript:BL97467_cuf8
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97467_cuf8

>transcript:BL97467_cuf8-protein ID=transcript:BL97467_cuf8-protein|Name=transcript:BL97467_cuf8|organism=Branchiostoma lanceolatum|type=polypeptide|length=258bp
LTSTNQPTKPTMTPFLLLFVALATASPMKRQTPPLDADGDGHLTIIEVDN
AMDLDVVLVALDTDMDQQFTVQQALQFLDHHYINVLDTNHDHMLSFQEIQ
AGLTLADLFAFYDSNGDGFLYGTEADRLYAMYDAAYGPAPVRVSRQAVDG
LDTNNDAHLTLSECEAGLNLSVVAVVLDTDGDMMFTVDEALQFIDHHYFN
VLDTNHDHMLSFQELRDGVTWADLFSFYDRNDDGFLYGAEADKVYFMYNE
VQNAAIPN
Run BLAST on NCBI

mRNA from alignment at Sc0000011:1829877..1833734-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97467_cuf8 ID=transcript:BL97467_cuf8|Name=transcript:BL97467_cuf8|organism=Branchiostoma lanceolatum|type=mRNA|length=3858bp|location=Sequence derived from alignment at Sc0000011:1829877..1833734- (Branchiostoma lanceolatum)
CCTGACTTCAACCAACCAACCAACCAAACCAACCATGACTCCCTTCCTCC TCCTCTTTGTTGCCCTGGCAACGGCTTCTCCAATGAAGAGGTATGTACTG AACGCCCTTCAGATTTTAGAACCATCTACATCTGTAGAAATCTAGAATTT GCAATAATCGTTAGCAAAGCTTAGAATTGTCGTACTTGTTGTGCGATTTA TCTTCAACGTATATCGTATGTATCTTGCCGCTGTCTTTATTGATATCAAA TATATCTTGCTGTTTAGCAACTGTACACTTTGTATTTAGAACCACGATTG ATATCCAAATTCCATTATTTACTTTATTTATTTACTTATTTTGTTACTAT TCTGCTTTCTTTAAATTAAGTCATTAGTTTGTTACACTACTTTTCTATGT AACTTTTATTATTATTGTACTTAAGTTTGTAAATGTGCCTTTGTATTATA TTTTGTTATTTCAGTTATTTTTTGTTTATGTATGCACGCAGGGCGCTTTG AAAATCGCCGTAGTGGCGACAAGTTTGTCCCTGGATAAATAAATAAATGA AATGAAATATGGAACTAAACTGAAATAATCTCAGTTGGTCAGCTGTGCTG GTGGGTAGAATGTTCTCTTTGCATTCGGCAGAACGCGGATTCAGTACTAT TTTTCAATATGGGTCCGGCGACACGTTGACATTCAAGTTGAAATATTTTA CCCTCCCTTTATTAACACAACGACTTACATTGTTCTGTCTCGACCGACTA TGACCTGATTAAGCAGAATCATGCAAAAAGTTAGAAATTTTCTGTATGTT CTGAACGCAGACAGACCCCTCCACTGGACGCTGATGGCGACGGACATCTC ACCATTATTGAAGTGGACAACGCTATGGACCTGGATGTGGTCCTGGTGGC CTTGGACACCGACAGTACGTACCGATGCTATATCTCATGTCGCCTTTTCA CACGAGTTTACACTTTTTCAGACAGGAGGCGTACGTCACATCCTTCGACC ATGTTGTCACATCCGCCGGCCATGTGACGTCATATCCGTCCGTCATGTGT AAAAGTGTAAATCCTTTCACAAACTCAAGCAGACGTTAAAAATCAATCGC TTCTCTCTCTCTGTGGGAAAGTTTATCGAATAGAAAATTCGTTTAAAATA TACCAAATTTACTTTGCAATCATCAATCATCCAAAATAGCGGACGGTACT TGACAATACGCCATAGTAACGTGAGTTCAAACCTCCTCGTTTCGAAACGC TTCTTCTTTCTTCAGAAAATAATTTCACCAGGTTGGTAGAGAATACGATA TTGAAGCATTTTTTACACCTGCTGATATTTCGGTGTCTCTCAGACACCTT CCTCGGAGCTTCTAACTGCAGAGCTGCTTCTCGCTGCTGCTTACAAACGT AACCAGAGGAGAGACACATCTGGTTGTCTATAAAAAGAGAACTCAAATAT CCTCTTCTTCTTCTGTAGTGGACCAGCAGTTCACCGTTCAACAGGCTCTG CAGTTCCTTGACCACCACTACATCAACGTCCTCGACACCAACCACGACCA CATGCTGAGCTTCCAGGAAATCCAGGCAGGCCTCACCTTGGCCGACCTGT TTGCCTTTTACGATAGCAACGGTACGTTCGGACGTTAACTTTACCTATAC AAGCCCTGCAATAGATGAAGTCAAATTCATAAATACGAAATGTGATGTTA CGTGTCTAGAGAGAAATTGTGAAGTACGAAAATCATTTTGAGAACTGCAC ATCTCCCTTAGCCTGATTTCATCTCAGGATGTAGACGTCGCAAAGGTGTT TTTTTCACTTCACACTTGTTTCGTTCTATGATATCAATGGTACGTTCCGA CATAAACATGCGACATACCTTTCACCCTATCTCGGCAATAGATGAATACA AGTGCACAAAAACTGACTACGTCACAGTGAAGACGTACGTCATTTCTGTG AACATTCAAATGGGTTCTAACATCACATTTTCATTCTAATGCTTCGAACG TACTGGTATGTTTAACAAGCTCGATGGTGCTAAAATGTTGACGAAAATGA CGTGCATCCCACTACGTAATTACCATTTGTCTTTTATAGTTATTGGGTGG GCCAACTACTCTCTCGTCGCAGCTAGGGGAGCCTTTTTTGAGTATTAAGC GACTTATTAACTTTAATTATCTCCGTTCCTGAAGTTATCGTGAGACGCAC ACGTCGCCAAGGTTAATTTTTTAACATTAACTTGTTTACCCTTTTTTAAA TCCCTTCAGGTGACGGATTCCTGTATGGTACGGAGGCGGATCGCCTCTAC GCCATGTACGACGCGGCGTACGGGCCCGCGCCGGTGCGCGTAAGCAGGCA GGCTGTCGACGGTCTTGACACCAACAACGACGCGCATCTCACCCTGAGCG AGTGTGAGGCCGGACTGAACCTGTCCGTAGTCGCCGTCGTTCTGGACACC GACGGTACGTACAAAACTCTACATCTCCTCCAGTCCTCTCTGTCCTCCAG TGCTCTTGGAAGATCTTATGGTGTGCATCCTGCATCCTCACACAGCTGCT GTATGCAGGACGTGTGAGGTCTGCCTACACTTTGTCCATGTTTCGGTGCC CACAGGAGGACGTCCCTGACGATCTCCCTCTTACTCCTCCAGGAATGACC AGCAAAACGTAGCCTCCTCTCACGGATGACTTGAGATATGGGGGGTAAAT CCCCATATAGCAGGTCCTTTGCGGGATGCTCCTTCCAGGACATGTTTAGG GCAGCACGTAGCAGCTTTGTGTAGCTGCCATCTGGTTTTCTCTCAAGTCA TCTCAAGTTGAAATTTTAAAAGAGTTTACACGTTTATGAAGGTTAGACAT CCTGGTATCCAATATATAAAGACAGTTCAACTGGATGAAATTCAGATAAA GAGTTTACGCAAATGTGTTGCCCGCCATGTGACGTCACATCCGTTCATTA TGTTACGTCACATCCGTTCATTATGTGACGTCACATGCAAAAGCTTGTTG GTAAGAGCTTTACTTTACGCACAGATAAAGCGAGTTAACAATAGAACCTT CTTTTCTGTGTAGGTGACATGATGTTCACCGTTGACGAGGCGCTGCAGTT CATCGACCATCACTACTTCAACGTCCTCGACACCAACCACGACCACATGC TCAGCTTCCAGGAACTTAGAGACGGTGTGACCTGGGCTGACCTGTTTTCC TTCTACGACAGAAACGGTACGTTCTGACGTCACTATACCTACAACATCCA GACATGAGACGTGTCTAAAACCCTCAAAACTGATTACGTCACTGTAAGAA CGTACGCCATTTTCGTTGACATGCGTTCTAAAATGTTTTTCTCGACCAGC ACCGCATTCGAACGCGCGTCGAACATGTACATGTAATAGCATGTTCGAAC GCGTTCGACTGTTGACAGAAATGACGTATACATTTTTTTTGCACATCTTT AATCTATGTATAGAGTATGCCAATGAAATACAAGCTTTCTTCATCAATTC CGAATTCATGACAATTTTTTAAACTTTCTAAAGAACTTTTCCATTGTTTC CCCTTGTATCCATGGAGCCTGGTTGGACACACATCGCCATGGCATTTTTT TTAAGCCACTCTTGTTATCTTCTAATGCATCAGATGACGGCTTCCTGTAC GGTGCAGAGGCGGACAAGGTCTACTTCATGTACAACGAGGTACAAAACGC CGCCATCCCGAACTGAGTGGGGGAATGTCGGCTGTTCTAATTACTAGCAA CAAATCAGCACTAAATGACAACTTGCAGACCTACAAACTACCCGAGTCCC TCCTCACGACCTAGTCGTTGGTGAGGACAAGGTAAACCGTGACTTGGTCA GACTTGCG

Coding sequence (CDS) from alignment at Sc0000011:1829877..1833734-

>transcript:BL97467_cuf8 ID=transcript:BL97467_cuf8|Name=transcript:BL97467_cuf8|organism=Branchiostoma lanceolatum|type=CDS|length=4662bp|location=Sequence derived from alignment at Sc0000011:1829877..1833734- (Branchiostoma lanceolatum)
CTGACTTCAACCAACCAACCAACCAAACCAACCATGACTCCCTTCCTCCT
CCTCTTTGTTGCCCTGGCAACGGCTTCTCCAATGAAGAGACAGACCCCTC
CACTGGACGCTGATGGCGACGGACATCTCACCATTATTGAAGTGGACAAC
GCTATGGACCTGGATGTGGTCCTGGTGGCCTTGGACACCGACATGGACCA
GCAGTTCACCGTTCAACAGGCTCTGCAGTTCCTTGACCACCACTACATCA
ACGTCCTCGACACCAACCACGACCACATGCTGAGCTTCCAGGAAATCCAG
GCAGGCCTCACCTTGGCCGACCTGTTTGCCTTTTACGATAGCAACGGTGA
CGGATTCCTGTATGGTACGGAGGCGGATCGCCTCTACGCCATGTACGACG
CGGCGTACGGGCCCGCGCCGGTGCGCGTAAGCAGGCAGGCTGTCGACGGT
CTTGACACCAACAACGACGCGCATCTCACCCTGAGCGAGTGTGAGGCCGG
ACTGAACCTGTCCGTAGTCGCCGTCGTTCTGGACACCGACGGTGACATGA
TGTTCACCGTTGACGAGGCGCTGCAGTTCATCGACCATCACTACTTCAAC
GTCCTCGACACCAACCACGACCACATGCTCAGCTTCCAGGAACTTAGAGA
CGGTGTGACCTGGGCTGACCTGTTTTCCTTCTACGACAGAAACGATGACG
GCTTCCTGTACGGTGCAGAGGCGGACAAGGTCTACTTCATGTACAACGAG
GTACAAAACGCCGCCATCCCGAACTGACTGACTTCAACCAACCAACCAAC
CAAACCAACCATGACTCCCTTCCTCCTCCTCTTTGTTGCCCTGGCAACGG
CTTCTCCAATGAAGAGACAGACCCCTCCACTGGACGCTGATGGCGACGGA
CATCTCACCATTATTGAAGTGGACAACGCTATGGACCTGGATGTGGTCCT
GGTGGCCTTGGACACCGACATGGACCAGCAGTTCACCGTTCAACAGGCTC
TGCAGTTCCTTGACCACCACTACATCAACGTCCTCGACACCAACCACGAC
CACATGCTGAGCTTCCAGGAAATCCAGGCAGGCCTCACCTTGGCCGACCT
GTTTGCCTTTTACGATAGCAACGGTGACGGATTCCTGTATGGTACGGAGG
CGGATCGCCTCTACGCCATGTACGACGCGGCGTACGGGCCCGCGCCGGTG
CGCGTAAGCAGGCAGGCTGTCGACGGTCTTGACACCAACAACGACGCGCA
TCTCACCCTGAGCGAGTGTGAGGCCGGACTGAACCTGTCCGTAGTCGCCG
TCGTTCTGGACACCGACGGTGACATGATGTTCACCGTTGACGAGGCGCTG
CAGTTCATCGACCATCACTACTTCAACGTCCTCGACACCAACCACGACCA
CATGCTCAGCTTCCAGGAACTTAGAGACGGTGTGACCTGGGCTGACCTGT
TTTCCTTCTACGACAGAAACGATGACGGCTTCCTGTACGGTGCAGAGGCG
GACAAGGTCTACTTCATGTACAACGAGGTACAAAACGCCGCCATCCCGAA
CTGACTGACTTCAACCAACCAACCAACCAAACCAACCATGACTCCCTTCC
TCCTCCTCTTTGTTGCCCTGGCAACGGCTTCTCCAATGAAGAGACAGACC
CCTCCACTGGACGCTGATGGCGACGGACATCTCACCATTATTGAAGTGGA
CAACGCTATGGACCTGGATGTGGTCCTGGTGGCCTTGGACACCGACATGG
ACCAGCAGTTCACCGTTCAACAGGCTCTGCAGTTCCTTGACCACCACTAC
ATCAACGTCCTCGACACCAACCACGACCACATGCTGAGCTTCCAGGAAAT
CCAGGCAGGCCTCACCTTGGCCGACCTGTTTGCCTTTTACGATAGCAACG
GTGACGGATTCCTGTATGGTACGGAGGCGGATCGCCTCTACGCCATGTAC
GACGCGGCGTACGGGCCCGCGCCGGTGCGCGTAAGCAGGCAGGCTGTCGA
CGGTCTTGACACCAACAACGACGCGCATCTCACCCTGAGCGAGTGTGAGG
CCGGACTGAACCTGTCCGTAGTCGCCGTCGTTCTGGACACCGACGGTGAC
ATGATGTTCACCGTTGACGAGGCGCTGCAGTTCATCGACCATCACTACTT
CAACGTCCTCGACACCAACCACGACCACATGCTCAGCTTCCAGGAACTTA
GAGACGGTGTGACCTGGGCTGACCTGTTTTCCTTCTACGACAGAAACGAT
GACGGCTTCCTGTACGGTGCAGAGGCGGACAAGGTCTACTTCATGTACAA
CGAGGTACAAAACGCCGCCATCCCGAACTGACTGACTTCAACCAACCAAC
CAACCAAACCAACCATGACTCCCTTCCTCCTCCTCTTTGTTGCCCTGGCA
ACGGCTTCTCCAATGAAGAGACAGACCCCTCCACTGGACGCTGATGGCGA
CGGACATCTCACCATTATTGAAGTGGACAACGCTATGGACCTGGATGTGG
TCCTGGTGGCCTTGGACACCGACATGGACCAGCAGTTCACCGTTCAACAG
GCTCTGCAGTTCCTTGACCACCACTACATCAACGTCCTCGACACCAACCA
CGACCACATGCTGAGCTTCCAGGAAATCCAGGCAGGCCTCACCTTGGCCG
ACCTGTTTGCCTTTTACGATAGCAACGGTGACGGATTCCTGTATGGTACG
GAGGCGGATCGCCTCTACGCCATGTACGACGCGGCGTACGGGCCCGCGCC
GGTGCGCGTAAGCAGGCAGGCTGTCGACGGTCTTGACACCAACAACGACG
CGCATCTCACCCTGAGCGAGTGTGAGGCCGGACTGAACCTGTCCGTAGTC
GCCGTCGTTCTGGACACCGACGGTGACATGATGTTCACCGTTGACGAGGC
GCTGCAGTTCATCGACCATCACTACTTCAACGTCCTCGACACCAACCACG
ACCACATGCTCAGCTTCCAGGAACTTAGAGACGGTGTGACCTGGGCTGAC
CTGTTTTCCTTCTACGACAGAAACGATGACGGCTTCCTGTACGGTGCAGA
GGCGGACAAGGTCTACTTCATGTACAACGAGGTACAAAACGCCGCCATCC
CGAACTGACTGACTTCAACCAACCAACCAACCAAACCAACCATGACTCCC
TTCCTCCTCCTCTTTGTTGCCCTGGCAACGGCTTCTCCAATGAAGAGACA
GACCCCTCCACTGGACGCTGATGGCGACGGACATCTCACCATTATTGAAG
TGGACAACGCTATGGACCTGGATGTGGTCCTGGTGGCCTTGGACACCGAC
ATGGACCAGCAGTTCACCGTTCAACAGGCTCTGCAGTTCCTTGACCACCA
CTACATCAACGTCCTCGACACCAACCACGACCACATGCTGAGCTTCCAGG
AAATCCAGGCAGGCCTCACCTTGGCCGACCTGTTTGCCTTTTACGATAGC
AACGGTGACGGATTCCTGTATGGTACGGAGGCGGATCGCCTCTACGCCAT
GTACGACGCGGCGTACGGGCCCGCGCCGGTGCGCGTAAGCAGGCAGGCTG
TCGACGGTCTTGACACCAACAACGACGCGCATCTCACCCTGAGCGAGTGT
GAGGCCGGACTGAACCTGTCCGTAGTCGCCGTCGTTCTGGACACCGACGG
TGACATGATGTTCACCGTTGACGAGGCGCTGCAGTTCATCGACCATCACT
ACTTCAACGTCCTCGACACCAACCACGACCACATGCTCAGCTTCCAGGAA
CTTAGAGACGGTGTGACCTGGGCTGACCTGTTTTCCTTCTACGACAGAAA
CGATGACGGCTTCCTGTACGGTGCAGAGGCGGACAAGGTCTACTTCATGT
ACAACGAGGTACAAAACGCCGCCATCCCGAACTGACTGACTTCAACCAAC
CAACCAACCAAACCAACCATGACTCCCTTCCTCCTCCTCTTTGTTGCCCT
GGCAACGGCTTCTCCAATGAAGAGACAGACCCCTCCACTGGACGCTGATG
GCGACGGACATCTCACCATTATTGAAGTGGACAACGCTATGGACCTGGAT
GTGGTCCTGGTGGCCTTGGACACCGACATGGACCAGCAGTTCACCGTTCA
ACAGGCTCTGCAGTTCCTTGACCACCACTACATCAACGTCCTCGACACCA
ACCACGACCACATGCTGAGCTTCCAGGAAATCCAGGCAGGCCTCACCTTG
GCCGACCTGTTTGCCTTTTACGATAGCAACGGTGACGGATTCCTGTATGG
TACGGAGGCGGATCGCCTCTACGCCATGTACGACGCGGCGTACGGGCCCG
CGCCGGTGCGCGTAAGCAGGCAGGCTGTCGACGGTCTTGACACCAACAAC
GACGCGCATCTCACCCTGAGCGAGTGTGAGGCCGGACTGAACCTGTCCGT
AGTCGCCGTCGTTCTGGACACCGACGGTGACATGATGTTCACCGTTGACG
AGGCGCTGCAGTTCATCGACCATCACTACTTCAACGTCCTCGACACCAAC
CACGACCACATGCTCAGCTTCCAGGAACTTAGAGACGGTGTGACCTGGGC
TGACCTGTTTTCCTTCTACGACAGAAACGATGACGGCTTCCTGTACGGTG
CAGAGGCGGACAAGGTCTACTTCATGTACAACGAGGTACAAAACGCCGCC
ATCCCGAACTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97467gene:BL97467Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97467_cuf8transcript:BL97467_cuf8-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97467_cuf8-E1BL97467_cuf8-E1-1564476830-102706Branchiostoma lanceolatumexon
BL97467_cuf8-E2BL97467_cuf8-E2-1564476830-102703Branchiostoma lanceolatumexon
BL97467_cuf8-E3BL97467_cuf8-E3-1564476830-102701Branchiostoma lanceolatumexon
BL97467_cuf8-E4BL97467_cuf8-E4-1564476830-102699Branchiostoma lanceolatumexon
BL97467_cuf8-E5BL97467_cuf8-E5-1564476830-102697Branchiostoma lanceolatumexon
BL97467_cuf8-E6BL97467_cuf8-E6-1564476830-102695Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000011genomeSc0000011:1829877..1833734 -
Properties
Property NameValue
Transcript idBL97467_cuf8
Biotypeprotein_coding