transcript:BL97462_cuf1 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97462_cuf1
Unique Nametranscript:BL97462_cuf1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97462_cuf1

>transcript:BL97462_cuf1-protein ID=transcript:BL97462_cuf1-protein|Name=transcript:BL97462_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=112bp
GERLMWTIMGCPVTFPDKGKLEKFAAYIKETTDKAKTMAADAKLSSSPLT
NRVTQALIERTQMEQDVTEMQAAIKNIESSNTLLLGRASKVGGQIAGLNR
QILAVQTMVDKL
Run BLAST on NCBI

mRNA from alignment at Sc0000311:43574..47224+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97462_cuf1 ID=transcript:BL97462_cuf1|Name=transcript:BL97462_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=3651bp|location=Sequence derived from alignment at Sc0000311:43574..47224+ (Branchiostoma lanceolatum)
AAGGAGAAAGACTAATGTGGACGATAATGGGTAAGCCTAGCGCAATTCCT
CATCATAGACCTCAGTATAAATACATGCTCTTGTGCTGTTAACATGTACA
TTCTTTAGTAAACGTATGCAACAAAATAGTGACGCCCGAACAAAAGTTCC
AGACTCAGATGAAGGACAAGTCTTACTCCGGAATCTACCTGCCGAGAGTT
TGATTTGCAGCGATGTCAGTTTGTCCATATTGATCGGAGACAAACAAGCC
TGCCAATCAGGCAATGTTGACTGGTCAGAGGACTTCGGCCGACCAGCCTG
ACCGCGGTTCGNGGCCGCGGTACGGGGTCTGTAGGGGCTCTGAGGGGAGT
CAAACCGGCAGAGTCATGAAGATATTTGTAGTTGCAGCAGTCGTCACTCT
TCTCGCCTCCGCTTGGGCGGTGGACCCGCCGAACTTGGAGGTGAAGGAAG
TCAGCAACAAGTGTGTCTGGACCTGGATAACCGCCATGCCTGATGCGAAG
ATAGGAGGTACGGTATGAACTACCTCTCAAGACAGGTTTGGCGCTAGTTG
GGCACTGCTGAGAACAGTACAGAAGTAGCTCACAGTGTACATTATAAGGT
AAAGTACGGCCCTGGTCAAGGTAAGAGCAGCATGATATGTGGCATTGTAT
GTAACGTTACATTGTTTGCATGTGTGCGTCTCAGTAAATGTATGTTTTTA
TCATTGTACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATGTATGTATGTATGTAT
GCGTGTGTGTGCGTGTGAATGTGCGTGTGTGTTTGTATGCGTGTGTGTGT
GTGTCCATGTGTATGTGTATGTGTGTGTGTGTGTTTGTATGCGTGTGTGT
GTGTGTCCATTTGTATGGGCGTGTGTGTGTGTGTGTGTTTGTATGAGTGT
GTGCGAGTGTGCGTGCGTGCGTATGTGTGTGAAACACGTCGCGTCGTAGT
CTTGATCGGACAGCTAAAAGTGACACTACTGAGGTAACCATGACTGAAGG
GTGAAACTAAATCTATAGTTGTAGACGTGGCACCAATGTGGTAGCCATGA
GTGCAGTTGCCAACTTGGTAAGTGATACCAGTCTACCACACTAGTGTCAC
TTTGTGCACGTCTTTAAATCGGAAGATAACATAAAATTCCCCGTGACCAG
AGGTTTTGTCCATTTCGTCCAAATAAAATTGAAGATGAACAACACTTTAT
CCTAGATTGTCCACGATATCATGATAAACGCTCAAAGCTGTTAAAACTTC
TTCCCGCTTGCTCAACAGAAGTTGATACATTCCATTCTATAGATAAATTC
AAATACATTCTAGAAGGAGACAACCCTTCTTGTGTACAAATAGGTAAATA
TATCAAAGAATGTTTAAATCTTAGAACTGGTAGTGTAAGTGATAGGTTAA
ACTCGACATGTTGAAGTATTCATATACTTGTACGTAGGTTAATCATTTTG
TATCCCATTGTTTGTTGTCTGCATGACTGTATAGTTGTAAAAGACCTGAC
GAAAGTCGCTGTACTTTTGTTGTGTCAATAAATATTTCTCTTAAATACAG
GAATATGATACTTGTTGGCTGTGACATCATGTCGGTTGGCATCATAGTGA
ACTAACCTGCCTATGTATGTTAATGTCCAAGCAGATCTATATGTTGCAAA
GACCGTATCCAACTGGCAGAAGAAGTTTTCATTGCAACCTAGTTCAATAC
GGTCTTCGCAACCTACAGATCTGCTTGGAGATGACATGTCTGTCCCTCTC
GCCAGGCTGCCCGGTAACCTTCCCCGACAAGGGAAAGCTGGAGAAGTTCG
CCGCCTATATCAAGGAAACGACCGACAAGGCGAAAACGATGGCGGCAGAT
GCCAAACTGTCGTCCTCTCCTCTGACAAACCGCGTCACGCAGGCCCTGAT
TGAGAGGTAAGGGAAGGTTTCTATACGGCAAGCTGGTAAGGGAAGTGTCT
ACTGTCTTGCCCGAAGGCTAATTGCAAGGATACATACAGATACATTATCT
TAAATACGGTCAAAATATCTTTTCTACAGCGCTATTTGGTGTCTGCTAGC
TGGTGAAAACTCGGGAAGAACGTTTTAATTGTTTCGAAAAGCTTGTTTCT
TTTTGAGCCTCATAATGATAGCATTATGACTGAAGGGTATTTCATTTTAT
AAAGGAATGAAAGCAAAGATTACAGACGTTTCTAATCATACTCAAGCGAT
GTGTGGAGGCAGAAATATTAATGTTAAAACATATTCACACAGTTCATATC
GCAATTTGATAGGGGAAGGATATTAAATGATAATATTTGGCTGTATTGGC
AAAGCATTTCCGAGAAAATAGTCGCCAATTGTTAAAATTAATGTTAAAAA
CGCAACAGTTTAATCATTGATAGAACATGGAGGGGCTTATAGCCTCGTAC
CACTAGTAGTACCAGGGCTAACACGGGAGGCTAACTTTACGGCTTCACCA
TGTTAGAACGCAGATGGAACAGGACGTGACCGAAATGCAGGCAGCCATCA
AGAACATCGAGTCTTCCAACACACTCCTGTTAGGGCGGGCTTCCAAAGTT
GGCGGTCAGATAGCGGGTCTGAATAGACAGGTGAGGCAGGGAAATATCAT
GGGAGCTGTTCTGACTTCTGATACTATAAGAACCGTATGTAATCGGGTGT
CTAGCTGGACTGCGCCAAATTTCGTTAGCAATTGTTAATATTCTAAGATT
ACAAAATCGCTATTGGCAACTTGGCGCAGACTGGCGCAAAGCGGCGCAAT
CACAGCCAGTCCGCCTTGTTGATGAAATCTAACAACTTATACGTTGGTTT
TCAATTCAGTGGCAACACTGTGATTTCCAATAAAGTTATCTTGCATCTGA
TTTGGGGTCGCAACTGAGAATGTGACAATCCGGGCGCGGCCATTTTGTTT
GTAGAGGTCACATGTTTTACCCGTGCACGGCTGTCTGGCTGCAAGGGAAA
ATTGGCGAAAATTCGCAAAGTTAGCCAAAAAATCGCAAAGTTGGCGCAAT
TTCGTAGAGCAATTTGGCACAGTGCAGTGAGATACACGCACTAACAAAGA
TTAATGTATACAGTACAAATGCATATCAGACTGTGATAACTGTTCAATTT
TTTTCTTTTTCGAAAAAAAATGAAGTAGGCATGATATGACAAAACAATTA
CTAGTATCTGATGAAAATAAATTCACCTGCTGATAGTTTCTAACCTGTTT
CGGATGTTTTACAATGTTAACGTTTGAATATTTAGAACCATGGACCTAAC
TATTGGTCAGAATAAATCAATGGTTAGATGGGCATTTCATACCTAAGTGT
CTTCCCACTTTTTTTTTTTAGATATTGGCTGTTCAAACTATGGTGGACAA
GTTGTAGCCATGACGTCATCAGACGAGTCATCAGACGTCATCAGACGAGG
TGATAACGAGTGATAACAACACATCCGTGATGGAGAATGTGATGTATTTT
CACATCAGAACACCATGTACTGTAACCAATAAATGTTCTCTACAAACCTA
A

Coding sequence (CDS) from alignment at Sc0000311:43574..47224+

>transcript:BL97462_cuf1 ID=transcript:BL97462_cuf1|Name=transcript:BL97462_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=1356bp|location=Sequence derived from alignment at Sc0000311:43574..47224+ (Branchiostoma lanceolatum)
GGAGAAAGACTAATGTGGACGATAATGGGCTGCCCGGTAACCTTCCCCGA
CAAGGGAAAGCTGGAGAAGTTCGCCGCCTATATCAAGGAAACGACCGACA
AGGCGAAAACGATGGCGGCAGATGCCAAACTGTCGTCCTCTCCTCTGACA
AACCGCGTCACGCAGGCCCTGATTGAGAGAACGCAGATGGAACAGGACGT
GACCGAAATGCAGGCAGCCATCAAGAACATCGAGTCTTCCAACACACTCC
TGTTAGGGCGGGCTTCCAAAGTTGGCGGTCAGATAGCGGGTCTGAATAGA
CAGATATTGGCTGTTCAAACTATGGTGGACAAGTTGTAGGGAGAAAGACT
AATGTGGACGATAATGGGCTGCCCGGTAACCTTCCCCGACAAGGGAAAGC
TGGAGAAGTTCGCCGCCTATATCAAGGAAACGACCGACAAGGCGAAAACG
ATGGCGGCAGATGCCAAACTGTCGTCCTCTCCTCTGACAAACCGCGTCAC
GCAGGCCCTGATTGAGAGAACGCAGATGGAACAGGACGTGACCGAAATGC
AGGCAGCCATCAAGAACATCGAGTCTTCCAACACACTCCTGTTAGGGCGG
GCTTCCAAAGTTGGCGGTCAGATAGCGGGTCTGAATAGACAGATATTGGC
TGTTCAAACTATGGTGGACAAGTTGTAGGGAGAAAGACTAATGTGGACGA
TAATGGGCTGCCCGGTAACCTTCCCCGACAAGGGAAAGCTGGAGAAGTTC
GCCGCCTATATCAAGGAAACGACCGACAAGGCGAAAACGATGGCGGCAGA
TGCCAAACTGTCGTCCTCTCCTCTGACAAACCGCGTCACGCAGGCCCTGA
TTGAGAGAACGCAGATGGAACAGGACGTGACCGAAATGCAGGCAGCCATC
AAGAACATCGAGTCTTCCAACACACTCCTGTTAGGGCGGGCTTCCAAAGT
TGGCGGTCAGATAGCGGGTCTGAATAGACAGATATTGGCTGTTCAAACTA
TGGTGGACAAGTTGTAGGGAGAAAGACTAATGTGGACGATAATGGGCTGC
CCGGTAACCTTCCCCGACAAGGGAAAGCTGGAGAAGTTCGCCGCCTATAT
CAAGGAAACGACCGACAAGGCGAAAACGATGGCGGCAGATGCCAAACTGT
CGTCCTCTCCTCTGACAAACCGCGTCACGCAGGCCCTGATTGAGAGAACG
CAGATGGAACAGGACGTGACCGAAATGCAGGCAGCCATCAAGAACATCGA
GTCTTCCAACACACTCCTGTTAGGGCGGGCTTCCAAAGTTGGCGGTCAGA
TAGCGGGTCTGAATAGACAGATATTGGCTGTTCAAACTATGGTGGACAAG
TTGTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97462gene:BL97462Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97462_cuf1transcript:BL97462_cuf1-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97462_cuf1-E1BL97462_cuf1-E1-1564476830-432683Branchiostoma lanceolatumexon
BL97462_cuf1-E2BL97462_cuf1-E2-1564476830-432685Branchiostoma lanceolatumexon
BL97462_cuf1-E3BL97462_cuf1-E3-1564476830-432687Branchiostoma lanceolatumexon
BL97462_cuf1-E4BL97462_cuf1-E4-1564476830-432690Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000311genomeSc0000311:43574..47224 +
Properties
Property NameValue
Transcript idBL97462_cuf1
Biotypeprotein_coding