Error message

Warning: shell_exec(): Cannot execute a blank command in include() (line 59 of /var/www/marimba/sites/default/modules/tripal_cvterm/theme/templates/tripal_feature_cvterm.tpl.php).

transcript:BL97462_cuf1 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97462_cuf1
Unique Nametranscript:BL97462_cuf1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97462_cuf1

>transcript:BL97462_cuf1-protein ID=transcript:BL97462_cuf1-protein|Name=transcript:BL97462_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=112bp
GERLMWTIMGCPVTFPDKGKLEKFAAYIKETTDKAKTMAADAKLSSSPLT
NRVTQALIERTQMEQDVTEMQAAIKNIESSNTLLLGRASKVGGQIAGLNR
QILAVQTMVDKL
Run BLAST on NCBI

mRNA from alignment at Sc0000311:43574..47224+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97462_cuf1 ID=transcript:BL97462_cuf1|Name=transcript:BL97462_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=3651bp|location=Sequence derived from alignment at Sc0000311:43574..47224+ (Branchiostoma lanceolatum)
AAGGAGAAAGACTAATGTGGACGATAATGGGTAAGCCTAGCGCAATTCCT CATCATAGACCTCAGTATAAATACATGCTCTTGTGCTGTTAACATGTACA TTCTTTAGTAAACGTATGCAACAAAATAGTGACGCCCGAACAAAAGTTCC AGACTCAGATGAAGGACAAGTCTTACTCCGGAATCTACCTGCCGAGAGTT TGATTTGCAGCGATGTCAGTTTGTCCATATTGATCGGAGACAAACAAGCC TGCCAATCAGGCAATGTTGACTGGTCAGAGGACTTCGGCCGACCAGCCTG ACCGCGGTTCGNGGCCGCGGTACGGGGTCTGTAGGGGCTCTGAGGGGAGT CAAACCGGCAGAGTCATGAAGATATTTGTAGTTGCAGCAGTCGTCACTCT TCTCGCCTCCGCTTGGGCGGTGGACCCGCCGAACTTGGAGGTGAAGGAAG TCAGCAACAAGTGTGTCTGGACCTGGATAACCGCCATGCCTGATGCGAAG ATAGGAGGTACGGTATGAACTACCTCTCAAGACAGGTTTGGCGCTAGTTG GGCACTGCTGAGAACAGTACAGAAGTAGCTCACAGTGTACATTATAAGGT AAAGTACGGCCCTGGTCAAGGTAAGAGCAGCATGATATGTGGCATTGTAT GTAACGTTACATTGTTTGCATGTGTGCGTCTCAGTAAATGTATGTTTTTA TCATTGTACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATGTATGTATGTATGTAT GCGTGTGTGTGCGTGTGAATGTGCGTGTGTGTTTGTATGCGTGTGTGTGT GTGTCCATGTGTATGTGTATGTGTGTGTGTGTGTTTGTATGCGTGTGTGT GTGTGTCCATTTGTATGGGCGTGTGTGTGTGTGTGTGTTTGTATGAGTGT GTGCGAGTGTGCGTGCGTGCGTATGTGTGTGAAACACGTCGCGTCGTAGT CTTGATCGGACAGCTAAAAGTGACACTACTGAGGTAACCATGACTGAAGG GTGAAACTAAATCTATAGTTGTAGACGTGGCACCAATGTGGTAGCCATGA GTGCAGTTGCCAACTTGGTAAGTGATACCAGTCTACCACACTAGTGTCAC TTTGTGCACGTCTTTAAATCGGAAGATAACATAAAATTCCCCGTGACCAG AGGTTTTGTCCATTTCGTCCAAATAAAATTGAAGATGAACAACACTTTAT CCTAGATTGTCCACGATATCATGATAAACGCTCAAAGCTGTTAAAACTTC TTCCCGCTTGCTCAACAGAAGTTGATACATTCCATTCTATAGATAAATTC AAATACATTCTAGAAGGAGACAACCCTTCTTGTGTACAAATAGGTAAATA TATCAAAGAATGTTTAAATCTTAGAACTGGTAGTGTAAGTGATAGGTTAA ACTCGACATGTTGAAGTATTCATATACTTGTACGTAGGTTAATCATTTTG TATCCCATTGTTTGTTGTCTGCATGACTGTATAGTTGTAAAAGACCTGAC GAAAGTCGCTGTACTTTTGTTGTGTCAATAAATATTTCTCTTAAATACAG GAATATGATACTTGTTGGCTGTGACATCATGTCGGTTGGCATCATAGTGA ACTAACCTGCCTATGTATGTTAATGTCCAAGCAGATCTATATGTTGCAAA GACCGTATCCAACTGGCAGAAGAAGTTTTCATTGCAACCTAGTTCAATAC GGTCTTCGCAACCTACAGATCTGCTTGGAGATGACATGTCTGTCCCTCTC GCCAGGCTGCCCGGTAACCTTCCCCGACAAGGGAAAGCTGGAGAAGTTCG CCGCCTATATCAAGGAAACGACCGACAAGGCGAAAACGATGGCGGCAGAT GCCAAACTGTCGTCCTCTCCTCTGACAAACCGCGTCACGCAGGCCCTGAT TGAGAGGTAAGGGAAGGTTTCTATACGGCAAGCTGGTAAGGGAAGTGTCT ACTGTCTTGCCCGAAGGCTAATTGCAAGGATACATACAGATACATTATCT TAAATACGGTCAAAATATCTTTTCTACAGCGCTATTTGGTGTCTGCTAGC TGGTGAAAACTCGGGAAGAACGTTTTAATTGTTTCGAAAAGCTTGTTTCT TTTTGAGCCTCATAATGATAGCATTATGACTGAAGGGTATTTCATTTTAT AAAGGAATGAAAGCAAAGATTACAGACGTTTCTAATCATACTCAAGCGAT GTGTGGAGGCAGAAATATTAATGTTAAAACATATTCACACAGTTCATATC GCAATTTGATAGGGGAAGGATATTAAATGATAATATTTGGCTGTATTGGC AAAGCATTTCCGAGAAAATAGTCGCCAATTGTTAAAATTAATGTTAAAAA CGCAACAGTTTAATCATTGATAGAACATGGAGGGGCTTATAGCCTCGTAC CACTAGTAGTACCAGGGCTAACACGGGAGGCTAACTTTACGGCTTCACCA TGTTAGAACGCAGATGGAACAGGACGTGACCGAAATGCAGGCAGCCATCA AGAACATCGAGTCTTCCAACACACTCCTGTTAGGGCGGGCTTCCAAAGTT GGCGGTCAGATAGCGGGTCTGAATAGACAGGTGAGGCAGGGAAATATCAT GGGAGCTGTTCTGACTTCTGATACTATAAGAACCGTATGTAATCGGGTGT CTAGCTGGACTGCGCCAAATTTCGTTAGCAATTGTTAATATTCTAAGATT ACAAAATCGCTATTGGCAACTTGGCGCAGACTGGCGCAAAGCGGCGCAAT CACAGCCAGTCCGCCTTGTTGATGAAATCTAACAACTTATACGTTGGTTT TCAATTCAGTGGCAACACTGTGATTTCCAATAAAGTTATCTTGCATCTGA TTTGGGGTCGCAACTGAGAATGTGACAATCCGGGCGCGGCCATTTTGTTT GTAGAGGTCACATGTTTTACCCGTGCACGGCTGTCTGGCTGCAAGGGAAA ATTGGCGAAAATTCGCAAAGTTAGCCAAAAAATCGCAAAGTTGGCGCAAT TTCGTAGAGCAATTTGGCACAGTGCAGTGAGATACACGCACTAACAAAGA TTAATGTATACAGTACAAATGCATATCAGACTGTGATAACTGTTCAATTT TTTTCTTTTTCGAAAAAAAATGAAGTAGGCATGATATGACAAAACAATTA CTAGTATCTGATGAAAATAAATTCACCTGCTGATAGTTTCTAACCTGTTT CGGATGTTTTACAATGTTAACGTTTGAATATTTAGAACCATGGACCTAAC TATTGGTCAGAATAAATCAATGGTTAGATGGGCATTTCATACCTAAGTGT CTTCCCACTTTTTTTTTTTAGATATTGGCTGTTCAAACTATGGTGGACAA GTTGTAGCCATGACGTCATCAGACGAGTCATCAGACGTCATCAGACGAGG TGATAACGAGTGATAACAACACATCCGTGATGGAGAATGTGATGTATTTT CACATCAGAACACCATGTACTGTAACCAATAAATGTTCTCTACAAACCTA A

Coding sequence (CDS) from alignment at Sc0000311:43574..47224+

>transcript:BL97462_cuf1 ID=transcript:BL97462_cuf1|Name=transcript:BL97462_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=1356bp|location=Sequence derived from alignment at Sc0000311:43574..47224+ (Branchiostoma lanceolatum)
GGAGAAAGACTAATGTGGACGATAATGGGCTGCCCGGTAACCTTCCCCGA
CAAGGGAAAGCTGGAGAAGTTCGCCGCCTATATCAAGGAAACGACCGACA
AGGCGAAAACGATGGCGGCAGATGCCAAACTGTCGTCCTCTCCTCTGACA
AACCGCGTCACGCAGGCCCTGATTGAGAGAACGCAGATGGAACAGGACGT
GACCGAAATGCAGGCAGCCATCAAGAACATCGAGTCTTCCAACACACTCC
TGTTAGGGCGGGCTTCCAAAGTTGGCGGTCAGATAGCGGGTCTGAATAGA
CAGATATTGGCTGTTCAAACTATGGTGGACAAGTTGTAGGGAGAAAGACT
AATGTGGACGATAATGGGCTGCCCGGTAACCTTCCCCGACAAGGGAAAGC
TGGAGAAGTTCGCCGCCTATATCAAGGAAACGACCGACAAGGCGAAAACG
ATGGCGGCAGATGCCAAACTGTCGTCCTCTCCTCTGACAAACCGCGTCAC
GCAGGCCCTGATTGAGAGAACGCAGATGGAACAGGACGTGACCGAAATGC
AGGCAGCCATCAAGAACATCGAGTCTTCCAACACACTCCTGTTAGGGCGG
GCTTCCAAAGTTGGCGGTCAGATAGCGGGTCTGAATAGACAGATATTGGC
TGTTCAAACTATGGTGGACAAGTTGTAGGGAGAAAGACTAATGTGGACGA
TAATGGGCTGCCCGGTAACCTTCCCCGACAAGGGAAAGCTGGAGAAGTTC
GCCGCCTATATCAAGGAAACGACCGACAAGGCGAAAACGATGGCGGCAGA
TGCCAAACTGTCGTCCTCTCCTCTGACAAACCGCGTCACGCAGGCCCTGA
TTGAGAGAACGCAGATGGAACAGGACGTGACCGAAATGCAGGCAGCCATC
AAGAACATCGAGTCTTCCAACACACTCCTGTTAGGGCGGGCTTCCAAAGT
TGGCGGTCAGATAGCGGGTCTGAATAGACAGATATTGGCTGTTCAAACTA
TGGTGGACAAGTTGTAGGGAGAAAGACTAATGTGGACGATAATGGGCTGC
CCGGTAACCTTCCCCGACAAGGGAAAGCTGGAGAAGTTCGCCGCCTATAT
CAAGGAAACGACCGACAAGGCGAAAACGATGGCGGCAGATGCCAAACTGT
CGTCCTCTCCTCTGACAAACCGCGTCACGCAGGCCCTGATTGAGAGAACG
CAGATGGAACAGGACGTGACCGAAATGCAGGCAGCCATCAAGAACATCGA
GTCTTCCAACACACTCCTGTTAGGGCGGGCTTCCAAAGTTGGCGGTCAGA
TAGCGGGTCTGAATAGACAGATATTGGCTGTTCAAACTATGGTGGACAAG
TTGTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97462gene:BL97462Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97462_cuf1transcript:BL97462_cuf1-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97462_cuf1-E1BL97462_cuf1-E1-1564476830-432683Branchiostoma lanceolatumexon
BL97462_cuf1-E2BL97462_cuf1-E2-1564476830-432685Branchiostoma lanceolatumexon
BL97462_cuf1-E3BL97462_cuf1-E3-1564476830-432687Branchiostoma lanceolatumexon
BL97462_cuf1-E4BL97462_cuf1-E4-1564476830-432690Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000311genomeSc0000311:43574..47224 +
Properties
Property NameValue
Transcript idBL97462_cuf1
Biotypeprotein_coding