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transcript:BL97452_cuf10 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97452_cuf10
Unique Nametranscript:BL97452_cuf10
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97452_cuf10

>transcript:BL97452_cuf10-protein ID=transcript:BL97452_cuf10-protein|Name=transcript:BL97452_cuf10|organism=Branchiostoma lanceolatum|type=polypeptide|length=109bp
MVKQVQSPSSTSRLVPYSPATVECLELGAARGDEGTPVFGAVCKGGQWGW
LARGSSLEVVNSQTGVRQGAWCFGRTQKDPMVTINCVKEYEYQKSVKLVV
GLQTGSGRG
Run BLAST on NCBI

mRNA from alignment at Sc0000010:5462058..5464887-

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97452_cuf10 ID=transcript:BL97452_cuf10|Name=transcript:BL97452_cuf10|organism=Branchiostoma lanceolatum|type=mRNA|length=2830bp|location=Sequence derived from alignment at Sc0000010:5462058..5464887- (Branchiostoma lanceolatum)
GAAAATGGCGCCTTCTGCGAACGATTTTGCGAAGTGAAAGTCGTTTCAGG CCGTTTTTAGACAGTTTCATTTTACTAAAGCGAATATAAGGTAGGTGCAA CATACAAGTGTACCTTACTGTTTGTATTAAGCCACAAACATTTGTTGATC CGTCTAGAAATCTGTCGTAATTTTTAAAAAACTTTGTTCCCCCCTCCCCA CTCCGCCAAAATATGGTGCCTCATTATGTTCATCTTGTCAAAAGATTTAA CTTATTTATTTAATTAATATTTTTTGTGTAATCGATTTGAGGCCACGGAT AGTTCCTGCTTAGGGTTTTCAGTGGGAAGCTGCTTAATTTTTTCCCCATA GATTATTTCATTTTAATTGTGTAGCTGTTTCTTTACATAGGTCTGCAAAA ATAATGGATATGAATATTATAACTTATGACTCCAAACTTGATGAACTTTA GCTATACTTCATCTTAGTGTAATATTTCCCCCAGTATGACACCATCATTG TATAATATAGCTCGACCTCTAGACTTCTGCCGTACCCACACTGTAGAGTG TACAATCATACATGTACCTGTTGTTTCCATAACGAGTTGTTTCATTATCA TGTTTTGCAGAGAGGTCCAAGATGGTGCAACAGGTCCAGTCCCCGAGCTC CACCTCCAGACTTCTGCCGTACCCACACTGTAGAGTGTACAATCATACCT GTTGTTTCATTAACGAGCTGTTTCACTAACGAGTTGTTTCATTATCATGT TTCTGTCCCATTCCCAGCAGACGACAAGATGGTGCAACAGGTGCAGTCCC CGAGCTCGACCTCCAGACTGGTGCCGTACCCACACTGTAGAGTGTACAAT CATACCTGTTATTTCATTAACGAGCGGTTTCATTAACGAGTTGTTTCATT ATCATGTTTCGCAGAGAGGTCCAAGATGGTGAAACAGGTGCAGTCCCCGA GCTCCACCTCCAGACTTGTGCCCTACTCCCCGGCTACTGTGGAGTGTCTG GAGTTAGGGGCAGCCCGGGGGGACGAGGGGACGCCGGTCTTCGGAGCAGT CTGTAAAGGTGAGTTAATTTGTAGGTGTATCAGTGTGTTTGTTTATTTCA CATAAACAGTATAACACTTGTCTGGCAACATGCGAATCACGCCAGTTTTG TTTTGCAGGTACAAGCTGCATATTATTAAGACCAAACTGTAAAGTTTGAT CCACTCACATTTCGAAGGACTCCTTGTCTTCCATGTTGGTAACACTGTCT GTAGCCTTAGAATATCCCATTTTAAGTTAACGTAAAATTCTAAAACCCCC ACAGAAGGGGGAGTCCACATCACCCCCCGCTCTGTCACTCTGCTCTTTTG CAATGCCCTAAGATGATTGCTTTTTAGAAGTAGTATTGTTAAATGAATTA GAGCCCTGAGTGTTTTATATATATATATATAACCTGTTCTCCAATCCATA GGCCAGTGGGGCTGGTTAGCCAGGGGAGCACCCAGTATTTTAAGTGCTTC ACTATGTATTAAGATGATAAAGATAAAACATTCCCCTGTATTTTAAACTG ACTGTAATAAACCTATTCTCTGATCCCCAGGAGGGTTAGTTAGGCAGAGG ATTTTCCAGTATTTTAAGTGCTATGTATTTAGATGATTGTTAACAATTGG AGCCCTGAGTGTTTTATAAAGTGACTGTAACCTGTTCTCCGCCCCCCAGG AGGCCAGTGGGGCTGGTTGGCCCGAGGTTCGTCCCTGGAGGTGGTGAACT CCCAGACTGGGGTCAGACAGGGGGCGTGGTGCTTCGGCAGGACTCAGAAG GATCCTATGGTGAGGATTTTATCAAAGACACAACTTATCTTTTTCTACAT GTATATTATTGTAGTAATGTCCACTGTGCTCAACTGTTGCAGTGGTCTGA ACATCCTGCAACTGCAATCAGTCTTTCTTCAATTCTATCCACTTTGTCCA CTTTGTTGCTGTATTATGTACAAAAATGATATGTGCAGTCATTAATTTTT GCAAGGATTTTATTTCGCGGTAGAGGGGGAAATAGGTTTTCACAGACGGT GTTTTAAGTTCTCGGATGAAACGATTCTGTAGTCTAAGTAATTTACAATG GAAACCTAAGGCATATTCTTGGTGTCATGAACTTGCAGTGGAGAAGTCGC CACAAATACCGTGCAAATAAAAACACCAAATTTACAGTATTTTATTTTGA TTTACCACATTTGTATTACCAAACAGGGCTCGAAATTCAGTTTTTGGAAT AGGTGCACTGGTGCACCCAAGCTAAAAAATTGGGTGCACCAAAACAATGT TGGGTGCACCACATAAAATAAAGTAGAATGTAACTATTGTAAGCAAAACC TAATGACAAACCTTACTGTTCCTCTTCATGCGCGTTTGGCACGCGATCTC GGCACGCAGTTTTGAAGCTTTCAAAATCGAAATTAACTCAAATTCTAACA TCAAAATCTTAAACAAGTACTACAACAAAGATTGTATCATTTTCTTACAC TTAGATGTCAAGAATATGCTCTCTACTAGTGTGCAGTGATACCTTACACA TTAAACCGTATGAAAATATTTGGGTGCACCAGTGCACCCACAGTAAAAAA ATTAGGTGCACAACTCCAAAATTGGGTGCACTGGGTGCACATGCACCCAG TATTTCGAGCCCTGCCAAAGGAACCAACTTATCTACAAATTGATGCATTT TTTCATTGTAACAGTTCTTCACCCAAGTATGATGTTGTATGTTCAGGTCA CTATCAACTGTGTAAAGGAGTACGAGTACCAGAAGTCAGTGAAGCTTGTG GTGGGACTGCAGACTGGTAGTGGCCGGGGG

Coding sequence (CDS) from alignment at Sc0000010:5462058..5464887-

>transcript:BL97452_cuf10 ID=transcript:BL97452_cuf10|Name=transcript:BL97452_cuf10|organism=Branchiostoma lanceolatum|type=CDS|length=981bp|location=Sequence derived from alignment at Sc0000010:5462058..5464887- (Branchiostoma lanceolatum)
ATGGTGAAACAGGTGCAGTCCCCGAGCTCCACCTCCAGACTTGTGCCCTA
CTCCCCGGCTACTGTGGAGTGTCTGGAGTTAGGGGCAGCCCGGGGGGACG
AGGGGACGCCGGTCTTCGGAGCAGTCTGTAAAGGAGGCCAGTGGGGCTGG
TTGGCCCGAGGTTCGTCCCTGGAGGTGGTGAACTCCCAGACTGGGGTCAG
ACAGGGGGCGTGGTGCTTCGGCAGGACTCAGAAGGATCCTATGGTCACTA
TCAACTGTGTAAAGGAGTACGAGTACCAGAAGTCAGTGAAGCTTGTGGTG
GGACTGCAGACTGGTAGTGGCCGGGGGATGGTGAAACAGGTGCAGTCCCC
GAGCTCCACCTCCAGACTTGTGCCCTACTCCCCGGCTACTGTGGAGTGTC
TGGAGTTAGGGGCAGCCCGGGGGGACGAGGGGACGCCGGTCTTCGGAGCA
GTCTGTAAAGGAGGCCAGTGGGGCTGGTTGGCCCGAGGTTCGTCCCTGGA
GGTGGTGAACTCCCAGACTGGGGTCAGACAGGGGGCGTGGTGCTTCGGCA
GGACTCAGAAGGATCCTATGGTCACTATCAACTGTGTAAAGGAGTACGAG
TACCAGAAGTCAGTGAAGCTTGTGGTGGGACTGCAGACTGGTAGTGGCCG
GGGGATGGTGAAACAGGTGCAGTCCCCGAGCTCCACCTCCAGACTTGTGC
CCTACTCCCCGGCTACTGTGGAGTGTCTGGAGTTAGGGGCAGCCCGGGGG
GACGAGGGGACGCCGGTCTTCGGAGCAGTCTGTAAAGGAGGCCAGTGGGG
CTGGTTGGCCCGAGGTTCGTCCCTGGAGGTGGTGAACTCCCAGACTGGGG
TCAGACAGGGGGCGTGGTGCTTCGGCAGGACTCAGAAGGATCCTATGGTC
ACTATCAACTGTGTAAAGGAGTACGAGTACCAGAAGTCAGTGAAGCTTGT
GGTGGGACTGCAGACTGGTAGTGGCCGGGGG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97452gene:BL97452Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97452_cuf10transcript:BL97452_cuf10-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97452_cuf10-E1BL97452_cuf10-E1-1564476830-100249Branchiostoma lanceolatumexon
BL97452_cuf10-E2BL97452_cuf10-E2-1564476830-100247Branchiostoma lanceolatumexon
BL97452_cuf10-E3BL97452_cuf10-E3-1564476830-100244Branchiostoma lanceolatumexon
BL97452_cuf10-E4BL97452_cuf10-E4-1564476830-100242Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000010genomeSc0000010:5462058..5464887 -
Properties
Property NameValue
Transcript idBL97452_cuf10
Biotypeprotein_coding