|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97448_cuf2 >transcript:BL97448_cuf2-protein ID=transcript:BL97448_cuf2-protein|Name=transcript:BL97448_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=399bp
MGDMESTMMSEDQATANYVERSMAVMEKSREKFTYNVKGHLELDDTGHPV
RILNGLRKFREDGKFTASIRSLLEFALAEAEEDLPMYDEDDDDVTLRALN
KCRLNRKFIDLAILTQNRMFAFPCHRAVLASSSPYFHCLLDGGYQESDQS
EIVIGDLSSGVLMKMIEYAYTGKLVVNRYNAQTMFEAGLILQYPVVQEAC
CEFMSDQLEPENVVGILQFAIKFACEDLRTKAFDYIVENLYLVSQSKEFR
FLSKETLLDLIKSDQQFFSSECLYEAAMTWIKFETEARKRFLKDFLESVS
LPQMKRGFFETVVEKESIVSKSSPECYQLIHAAKQKMEKRRENGASREAI
VIFGGSNEGVFVPEIDLYDPRLSHWDSLPSLPRHTEGARHAMAALNNDL Run BLAST on NCBI mRNA from alignment at Sc0000010:4799160..4802602- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97448_cuf2 ID=transcript:BL97448_cuf2|Name=transcript:BL97448_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=3443bp|location=Sequence derived from alignment at Sc0000010:4799160..4802602- (Branchiostoma lanceolatum)
AAAAGAGTAACCAGAAGCTGTAGCAGTACAGGTTATCACATCTTTTGCCA
TAATCTTTTGATTCCAGGTTACAGTCTACAATACAGCTTAGTTTTAATGA
TTATATTAAATGTGCGTATATCATATATATTGCTTAATAACTGTGTTGAA
AACTGCCATCTTGCAATGCCCGGATGTTAGAAGCAAATTACAAAACATCT
ATAGTTTTTATTCTGTCGATGACGTAACGTTTATACCCTGTGTTTCTTGA
TACATTCTATTAGTTCAAAAACAAAAATCTTATCGTTTTCTATCATTTCT
GTCAATAGTTTTCTTTAACAGAGTTCAATAATTTATTTCTATGGTCATGA
GTTGTAGCCATTCCAAGAAAAACGACACTTTTTCTTCCTTTTCTTTTGGT
TTTAGTGGAACAACGACACACCAGCACCCCTCAATGTGACCCGTCTCTCT
ACAGAACCTGTTCTATAAAAGGAAACCGGCCGGTTACACAAACGGTCGCC
CGGCGCATTGCGTATCGGGAAAGCCTTACGTGATGTTATATTTTGTAGGC
CACAGCTATAGTTCTGTGTCATAACAGATCTACTGCGTGATACAATAAAC
AGTGTTGGTTGACTGACCATCGGGACGACTACTTTCTTCAGGAGTTTCTC
AGCCTAACAAAGCGAAGGGTAAGGCTTCATTATCAATATTTTGTTTTAAT
TCAGGAAACCCCATATGTAAGTGGTACGTAGCCATATTAAACGAAAGTAA
GCTAGGTCTGTCTGTGTCACTGTGATTGGTTTCATAACAACGCCCTCTAC
CGTTGACTGACGGATGTGCAGTTATACTACATGTAAATATCATGATGACA
TAATATATATTACAGTCGTCTTCTATACCATCCCTCCATTAATGAAGAGC
CCAGATGTAACTGTACGTTTGTATTGTGGTACGTGATGCCGCCTCTTCGC
CATATCGAGCAAATTGAAGTTAAATTCCGTGGATCCGTGGGCGGGGGTTC
GATCCCATGGTCGGCCCCAGCTCGGACATGTTATAAGAGATTGCATTCGT
CATTTCTGATGTTTCCAGGCTCTACTATCCATAACCCCTTAGGAAGGCCT
GGTGGAGGCTGTTTGTTTCAATGTATAGTCTATTTCCAGGCTCGTTAGGC
TGCCACCATGGGTGACATGGAGAGCACGATGATGTCCGAGGACCAGGCTA
CCGCCAACTACGTGGAGAGGTCAATGGCAGTGATGGAAAAATCGCGGGAA
AAGTTCACGTATAATGTCAAAGGTCATCTGGAGCTGGACGATACAGGCCA
TCCCGTCAGAATATTAAACGGTAAGAACTTTGAATTTTAGAAGAAAAAAA
TACATCGAAAGCTTCTCCCACAGAGAACCTCGCCCACGACAACACTTGGG
GAGACTATGTAAACCGGGCTGTGGGTTCCATTTTATGGGCCTGGCCTCTA
AATATGGCCAGTTGTCAGGCAAACGGAGAATCGCCTAAATGGTTTCTTTA
GGTTAAGCAGATTCTCTGATAGGCCGGCAGCTGCAGGTTAGAGGCCATAC
CTTCGAAAGTGGAAACCCCAGCCCGGTTTAGCAGAGCGTCCCTAAGGTAC
ATTTTATATGCGCTAGCGCTGCGTAGGAGAATGCACGTAGTGTATATGAT
AAATATAGTACAATACTTGTCTTGAAACTAAATGTTTACTTGCTCGAGCT
CGTGCCTATATCGCTATCGTTGACAGTTTTGAAAGATATGTATTCATAGT
TGTGTGCCTCAGCTCAAATATTTGAAAACTACTTCTACATACACATATTC
CCTCTAGCTTTATTCAGTCATCACTACACGAACTGCTGCAAAAGACAACG
CAGTAGACTTGAGTACACTAGTTGAACACGACTAGTCTTCCAACGGATGT
TATTTCAATGTTTCAAGGAAACGTTACTTGATTTCCTTTTCATCACACTA
TACCTGTCTGTGCCCCAGGTTTACGAAAATTCCGGGAAGACGGCAAGTTC
ACGGCCAGCATCCGGTCTCTCCTGGAGTTCGCGCTGGCGGAGGCCGAAGA
GGACCTCCCGATGTACGACGAAGACGACGATGACGTCACTCTGCGTGCGC
TCAACAAATGTCGTCTGAACAGGAAATTTATCGACCTCGCCATCCTGACG
CAGAACCGGATGTTCGCGTTTCCCTGCCATCGCGCCGTGCTGGCATCCTC
AAGGTCGGTATCTCTGGGGTGTTCCGTATCGCCCGAAGTACCAGCCCGAC
CTCGGGAGGGCTGGGACCGAGGGTGATGCGGAATACACCGTGTTGTGTTT
TATTTATGTCATACCAACCGGAAAAAAATCTGCGAAATGCGCCTGAAGTT
GAGAGAGTTTTGTGTCATTAAACAAGGAGGTTAAATATAACCTCCTTGCA
TTGAACAAAGAAATCGTAACAACATTAACATCGAATCCGACATACGAATT
TTCGACAGCGGCGCACTCGAAATGCATTCTAAATATTCCATGGAAGCCCG
TGTGATACAGTTTAGAACGTAAGTTCATTACAAATTCTTACATTACAAAT
TCTTATGTGATACGGAACATTATCACACGATAGTTTATACCATAGACTGT
TATTGTATTCATTGCTTTGTCATTTTTGCCATACTCATCCAGCCCCTACT
TCCACTGCCTATTGGACGGCGGGTACCAGGAGTCCGACCAATCAGAGATC
GTCATAGGCGACCTGTCGTCAGGTGTGCTGATGAAGATGATAGAGTACGC
GTACACAGGTAAACTCGTGGTCAACAGATACAACGCGCAGACCATGTTCG
AAGCTGGTTTGATCCTCCAGTACCCAGTCGTCCAAGAGGCCTGTTGTGAG
TTCATGTCCGACCAGCTAGAACCAGAAAACGTTGTCGGGATTTTGCAGTT
CGCGATTAAGTTTGCGTGCGAAGATCTGAGGACAAAAGCTTTCGACTACA
TCGTTGAGAACCTGTACCTCGTCTCTCAGAGTAAAGAGTTCAGGTTTCTG
AGTAAGGAGACCCTCCTGGACTTGATAAAAAGTGATCAGCAGTTCTTTTC
CTCGGAATGTCTTTACGAAGCCGCGATGACGTGGATAAAGTTTGAAACCG
AAGCTAGAAAGAGATTCTTGAAAGACTTCTTAGAGAGCGTCAGCCTTCCG
CAAATGAAGAGAGGATTCTTCGAGACGGTTGTAGAAAAGGAGTCGATTGT
CTCCAAGTCCTCGCCTGAATGTTATCAACTAATACACGCCGCGAAACAAA
AGATGGAGAAACGGCGGGAAAACGGGGCTTCCAGGGAAGCGATCGTCATC
TTCGGGGGTTCCAACGAAGGAGTGTTCGTTCCGGAGATAGACTTGTACGA
CCCGCGGCTGAGTCACTGGGACTCTCTCCCCAGTCTTCCCAGACACACGG
AGGGGGCTCGCCACGCCATGGCCGCGCTGAACAACGATCTGTA Coding sequence (CDS) from alignment at Sc0000010:4799160..4802602- >transcript:BL97448_cuf2 ID=transcript:BL97448_cuf2|Name=transcript:BL97448_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=3591bp|location=Sequence derived from alignment at Sc0000010:4799160..4802602- (Branchiostoma lanceolatum)
ATGGGTGACATGGAGAGCACGATGATGTCCGAGGACCAGGCTACCGCCAA
CTACGTGGAGAGGTCAATGGCAGTGATGGAAAAATCGCGGGAAAAGTTCA
CGTATAATGTCAAAGGTCATCTGGAGCTGGACGATACAGGCCATCCCGTC
AGAATATTAAACGGTTTACGAAAATTCCGGGAAGACGGCAAGTTCACGGC
CAGCATCCGGTCTCTCCTGGAGTTCGCGCTGGCGGAGGCCGAAGAGGACC
TCCCGATGTACGACGAAGACGACGATGACGTCACTCTGCGTGCGCTCAAC
AAATGTCGTCTGAACAGGAAATTTATCGACCTCGCCATCCTGACGCAGAA
CCGGATGTTCGCGTTTCCCTGCCATCGCGCCGTGCTGGCATCCTCAAGCC
CCTACTTCCACTGCCTATTGGACGGCGGGTACCAGGAGTCCGACCAATCA
GAGATCGTCATAGGCGACCTGTCGTCAGGTGTGCTGATGAAGATGATAGA
GTACGCGTACACAGGTAAACTCGTGGTCAACAGATACAACGCGCAGACCA
TGTTCGAAGCTGGTTTGATCCTCCAGTACCCAGTCGTCCAAGAGGCCTGT
TGTGAGTTCATGTCCGACCAGCTAGAACCAGAAAACGTTGTCGGGATTTT
GCAGTTCGCGATTAAGTTTGCGTGCGAAGATCTGAGGACAAAAGCTTTCG
ACTACATCGTTGAGAACCTGTACCTCGTCTCTCAGAGTAAAGAGTTCAGG
TTTCTGAGTAAGGAGACCCTCCTGGACTTGATAAAAAGTGATCAGCAGTT
CTTTTCCTCGGAATGTCTTTACGAAGCCGCGATGACGTGGATAAAGTTTG
AAACCGAAGCTAGAAAGAGATTCTTGAAAGACTTCTTAGAGAGCGTCAGC
CTTCCGCAAATGAAGAGAGGATTCTTCGAGACGGTTGTAGAAAAGGAGTC
GATTGTCTCCAAGTCCTCGCCTGAATGTTATCAACTAATACACGCCGCGA
AACAAAAGATGGAGAAACGGCGGGAAAACGGGGCTTCCAGGGAAGCGATC
GTCATCTTCGGGGGTTCCAACGAAGGAGTGTTCGTTCCGGAGATAGACTT
GTACGACCCGCGGCTGAGTCACTGGGACTCTCTCCCCAGTCTTCCCAGAC
ACACGGAGGGGGCTCGCCACGCCATGGCCGCGCTGAACAACGATCTGATG
GGTGACATGGAGAGCACGATGATGTCCGAGGACCAGGCTACCGCCAACTA
CGTGGAGAGGTCAATGGCAGTGATGGAAAAATCGCGGGAAAAGTTCACGT
ATAATGTCAAAGGTCATCTGGAGCTGGACGATACAGGCCATCCCGTCAGA
ATATTAAACGGTTTACGAAAATTCCGGGAAGACGGCAAGTTCACGGCCAG
CATCCGGTCTCTCCTGGAGTTCGCGCTGGCGGAGGCCGAAGAGGACCTCC
CGATGTACGACGAAGACGACGATGACGTCACTCTGCGTGCGCTCAACAAA
TGTCGTCTGAACAGGAAATTTATCGACCTCGCCATCCTGACGCAGAACCG
GATGTTCGCGTTTCCCTGCCATCGCGCCGTGCTGGCATCCTCAAGCCCCT
ACTTCCACTGCCTATTGGACGGCGGGTACCAGGAGTCCGACCAATCAGAG
ATCGTCATAGGCGACCTGTCGTCAGGTGTGCTGATGAAGATGATAGAGTA
CGCGTACACAGGTAAACTCGTGGTCAACAGATACAACGCGCAGACCATGT
TCGAAGCTGGTTTGATCCTCCAGTACCCAGTCGTCCAAGAGGCCTGTTGT
GAGTTCATGTCCGACCAGCTAGAACCAGAAAACGTTGTCGGGATTTTGCA
GTTCGCGATTAAGTTTGCGTGCGAAGATCTGAGGACAAAAGCTTTCGACT
ACATCGTTGAGAACCTGTACCTCGTCTCTCAGAGTAAAGAGTTCAGGTTT
CTGAGTAAGGAGACCCTCCTGGACTTGATAAAAAGTGATCAGCAGTTCTT
TTCCTCGGAATGTCTTTACGAAGCCGCGATGACGTGGATAAAGTTTGAAA
CCGAAGCTAGAAAGAGATTCTTGAAAGACTTCTTAGAGAGCGTCAGCCTT
CCGCAAATGAAGAGAGGATTCTTCGAGACGGTTGTAGAAAAGGAGTCGAT
TGTCTCCAAGTCCTCGCCTGAATGTTATCAACTAATACACGCCGCGAAAC
AAAAGATGGAGAAACGGCGGGAAAACGGGGCTTCCAGGGAAGCGATCGTC
ATCTTCGGGGGTTCCAACGAAGGAGTGTTCGTTCCGGAGATAGACTTGTA
CGACCCGCGGCTGAGTCACTGGGACTCTCTCCCCAGTCTTCCCAGACACA
CGGAGGGGGCTCGCCACGCCATGGCCGCGCTGAACAACGATCTGATGGGT
GACATGGAGAGCACGATGATGTCCGAGGACCAGGCTACCGCCAACTACGT
GGAGAGGTCAATGGCAGTGATGGAAAAATCGCGGGAAAAGTTCACGTATA
ATGTCAAAGGTCATCTGGAGCTGGACGATACAGGCCATCCCGTCAGAATA
TTAAACGGTTTACGAAAATTCCGGGAAGACGGCAAGTTCACGGCCAGCAT
CCGGTCTCTCCTGGAGTTCGCGCTGGCGGAGGCCGAAGAGGACCTCCCGA
TGTACGACGAAGACGACGATGACGTCACTCTGCGTGCGCTCAACAAATGT
CGTCTGAACAGGAAATTTATCGACCTCGCCATCCTGACGCAGAACCGGAT
GTTCGCGTTTCCCTGCCATCGCGCCGTGCTGGCATCCTCAAGCCCCTACT
TCCACTGCCTATTGGACGGCGGGTACCAGGAGTCCGACCAATCAGAGATC
GTCATAGGCGACCTGTCGTCAGGTGTGCTGATGAAGATGATAGAGTACGC
GTACACAGGTAAACTCGTGGTCAACAGATACAACGCGCAGACCATGTTCG
AAGCTGGTTTGATCCTCCAGTACCCAGTCGTCCAAGAGGCCTGTTGTGAG
TTCATGTCCGACCAGCTAGAACCAGAAAACGTTGTCGGGATTTTGCAGTT
CGCGATTAAGTTTGCGTGCGAAGATCTGAGGACAAAAGCTTTCGACTACA
TCGTTGAGAACCTGTACCTCGTCTCTCAGAGTAAAGAGTTCAGGTTTCTG
AGTAAGGAGACCCTCCTGGACTTGATAAAAAGTGATCAGCAGTTCTTTTC
CTCGGAATGTCTTTACGAAGCCGCGATGACGTGGATAAAGTTTGAAACCG
AAGCTAGAAAGAGATTCTTGAAAGACTTCTTAGAGAGCGTCAGCCTTCCG
CAAATGAAGAGAGGATTCTTCGAGACGGTTGTAGAAAAGGAGTCGATTGT
CTCCAAGTCCTCGCCTGAATGTTATCAACTAATACACGCCGCGAAACAAA
AGATGGAGAAACGGCGGGAAAACGGGGCTTCCAGGGAAGCGATCGTCATC
TTCGGGGGTTCCAACGAAGGAGTGTTCGTTCCGGAGATAGACTTGTACGA
CCCGCGGCTGAGTCACTGGGACTCTCTCCCCAGTCTTCCCAGACACACGG
AGGGGGCTCGCCACGCCATGGCCGCGCTGAACAACGATCTG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000010 | genome | Sc0000010:4799160..4802602 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97448_cuf2 |
| Biotype | protein_coding |
|
