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transcript:BL97448_cuf2 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97448_cuf2
Unique Nametranscript:BL97448_cuf2
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97448_cuf2

>transcript:BL97448_cuf2-protein ID=transcript:BL97448_cuf2-protein|Name=transcript:BL97448_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=399bp
MGDMESTMMSEDQATANYVERSMAVMEKSREKFTYNVKGHLELDDTGHPV
RILNGLRKFREDGKFTASIRSLLEFALAEAEEDLPMYDEDDDDVTLRALN
KCRLNRKFIDLAILTQNRMFAFPCHRAVLASSSPYFHCLLDGGYQESDQS
EIVIGDLSSGVLMKMIEYAYTGKLVVNRYNAQTMFEAGLILQYPVVQEAC
CEFMSDQLEPENVVGILQFAIKFACEDLRTKAFDYIVENLYLVSQSKEFR
FLSKETLLDLIKSDQQFFSSECLYEAAMTWIKFETEARKRFLKDFLESVS
LPQMKRGFFETVVEKESIVSKSSPECYQLIHAAKQKMEKRRENGASREAI
VIFGGSNEGVFVPEIDLYDPRLSHWDSLPSLPRHTEGARHAMAALNNDL
Run BLAST on NCBI

mRNA from alignment at Sc0000010:4799160..4802602-

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97448_cuf2 ID=transcript:BL97448_cuf2|Name=transcript:BL97448_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=3443bp|location=Sequence derived from alignment at Sc0000010:4799160..4802602- (Branchiostoma lanceolatum)
AAAAGAGTAACCAGAAGCTGTAGCAGTACAGGTTATCACATCTTTTGCCA TAATCTTTTGATTCCAGGTTACAGTCTACAATACAGCTTAGTTTTAATGA TTATATTAAATGTGCGTATATCATATATATTGCTTAATAACTGTGTTGAA AACTGCCATCTTGCAATGCCCGGATGTTAGAAGCAAATTACAAAACATCT ATAGTTTTTATTCTGTCGATGACGTAACGTTTATACCCTGTGTTTCTTGA TACATTCTATTAGTTCAAAAACAAAAATCTTATCGTTTTCTATCATTTCT GTCAATAGTTTTCTTTAACAGAGTTCAATAATTTATTTCTATGGTCATGA GTTGTAGCCATTCCAAGAAAAACGACACTTTTTCTTCCTTTTCTTTTGGT TTTAGTGGAACAACGACACACCAGCACCCCTCAATGTGACCCGTCTCTCT ACAGAACCTGTTCTATAAAAGGAAACCGGCCGGTTACACAAACGGTCGCC CGGCGCATTGCGTATCGGGAAAGCCTTACGTGATGTTATATTTTGTAGGC CACAGCTATAGTTCTGTGTCATAACAGATCTACTGCGTGATACAATAAAC AGTGTTGGTTGACTGACCATCGGGACGACTACTTTCTTCAGGAGTTTCTC AGCCTAACAAAGCGAAGGGTAAGGCTTCATTATCAATATTTTGTTTTAAT TCAGGAAACCCCATATGTAAGTGGTACGTAGCCATATTAAACGAAAGTAA GCTAGGTCTGTCTGTGTCACTGTGATTGGTTTCATAACAACGCCCTCTAC CGTTGACTGACGGATGTGCAGTTATACTACATGTAAATATCATGATGACA TAATATATATTACAGTCGTCTTCTATACCATCCCTCCATTAATGAAGAGC CCAGATGTAACTGTACGTTTGTATTGTGGTACGTGATGCCGCCTCTTCGC CATATCGAGCAAATTGAAGTTAAATTCCGTGGATCCGTGGGCGGGGGTTC GATCCCATGGTCGGCCCCAGCTCGGACATGTTATAAGAGATTGCATTCGT CATTTCTGATGTTTCCAGGCTCTACTATCCATAACCCCTTAGGAAGGCCT GGTGGAGGCTGTTTGTTTCAATGTATAGTCTATTTCCAGGCTCGTTAGGC TGCCACCATGGGTGACATGGAGAGCACGATGATGTCCGAGGACCAGGCTA CCGCCAACTACGTGGAGAGGTCAATGGCAGTGATGGAAAAATCGCGGGAA AAGTTCACGTATAATGTCAAAGGTCATCTGGAGCTGGACGATACAGGCCA TCCCGTCAGAATATTAAACGGTAAGAACTTTGAATTTTAGAAGAAAAAAA TACATCGAAAGCTTCTCCCACAGAGAACCTCGCCCACGACAACACTTGGG GAGACTATGTAAACCGGGCTGTGGGTTCCATTTTATGGGCCTGGCCTCTA AATATGGCCAGTTGTCAGGCAAACGGAGAATCGCCTAAATGGTTTCTTTA GGTTAAGCAGATTCTCTGATAGGCCGGCAGCTGCAGGTTAGAGGCCATAC CTTCGAAAGTGGAAACCCCAGCCCGGTTTAGCAGAGCGTCCCTAAGGTAC ATTTTATATGCGCTAGCGCTGCGTAGGAGAATGCACGTAGTGTATATGAT AAATATAGTACAATACTTGTCTTGAAACTAAATGTTTACTTGCTCGAGCT CGTGCCTATATCGCTATCGTTGACAGTTTTGAAAGATATGTATTCATAGT TGTGTGCCTCAGCTCAAATATTTGAAAACTACTTCTACATACACATATTC CCTCTAGCTTTATTCAGTCATCACTACACGAACTGCTGCAAAAGACAACG CAGTAGACTTGAGTACACTAGTTGAACACGACTAGTCTTCCAACGGATGT TATTTCAATGTTTCAAGGAAACGTTACTTGATTTCCTTTTCATCACACTA TACCTGTCTGTGCCCCAGGTTTACGAAAATTCCGGGAAGACGGCAAGTTC ACGGCCAGCATCCGGTCTCTCCTGGAGTTCGCGCTGGCGGAGGCCGAAGA GGACCTCCCGATGTACGACGAAGACGACGATGACGTCACTCTGCGTGCGC TCAACAAATGTCGTCTGAACAGGAAATTTATCGACCTCGCCATCCTGACG CAGAACCGGATGTTCGCGTTTCCCTGCCATCGCGCCGTGCTGGCATCCTC AAGGTCGGTATCTCTGGGGTGTTCCGTATCGCCCGAAGTACCAGCCCGAC CTCGGGAGGGCTGGGACCGAGGGTGATGCGGAATACACCGTGTTGTGTTT TATTTATGTCATACCAACCGGAAAAAAATCTGCGAAATGCGCCTGAAGTT GAGAGAGTTTTGTGTCATTAAACAAGGAGGTTAAATATAACCTCCTTGCA TTGAACAAAGAAATCGTAACAACATTAACATCGAATCCGACATACGAATT TTCGACAGCGGCGCACTCGAAATGCATTCTAAATATTCCATGGAAGCCCG TGTGATACAGTTTAGAACGTAAGTTCATTACAAATTCTTACATTACAAAT TCTTATGTGATACGGAACATTATCACACGATAGTTTATACCATAGACTGT TATTGTATTCATTGCTTTGTCATTTTTGCCATACTCATCCAGCCCCTACT TCCACTGCCTATTGGACGGCGGGTACCAGGAGTCCGACCAATCAGAGATC GTCATAGGCGACCTGTCGTCAGGTGTGCTGATGAAGATGATAGAGTACGC GTACACAGGTAAACTCGTGGTCAACAGATACAACGCGCAGACCATGTTCG AAGCTGGTTTGATCCTCCAGTACCCAGTCGTCCAAGAGGCCTGTTGTGAG TTCATGTCCGACCAGCTAGAACCAGAAAACGTTGTCGGGATTTTGCAGTT CGCGATTAAGTTTGCGTGCGAAGATCTGAGGACAAAAGCTTTCGACTACA TCGTTGAGAACCTGTACCTCGTCTCTCAGAGTAAAGAGTTCAGGTTTCTG AGTAAGGAGACCCTCCTGGACTTGATAAAAAGTGATCAGCAGTTCTTTTC CTCGGAATGTCTTTACGAAGCCGCGATGACGTGGATAAAGTTTGAAACCG AAGCTAGAAAGAGATTCTTGAAAGACTTCTTAGAGAGCGTCAGCCTTCCG CAAATGAAGAGAGGATTCTTCGAGACGGTTGTAGAAAAGGAGTCGATTGT CTCCAAGTCCTCGCCTGAATGTTATCAACTAATACACGCCGCGAAACAAA AGATGGAGAAACGGCGGGAAAACGGGGCTTCCAGGGAAGCGATCGTCATC TTCGGGGGTTCCAACGAAGGAGTGTTCGTTCCGGAGATAGACTTGTACGA CCCGCGGCTGAGTCACTGGGACTCTCTCCCCAGTCTTCCCAGACACACGG AGGGGGCTCGCCACGCCATGGCCGCGCTGAACAACGATCTGTA

Coding sequence (CDS) from alignment at Sc0000010:4799160..4802602-

>transcript:BL97448_cuf2 ID=transcript:BL97448_cuf2|Name=transcript:BL97448_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=3591bp|location=Sequence derived from alignment at Sc0000010:4799160..4802602- (Branchiostoma lanceolatum)
ATGGGTGACATGGAGAGCACGATGATGTCCGAGGACCAGGCTACCGCCAA
CTACGTGGAGAGGTCAATGGCAGTGATGGAAAAATCGCGGGAAAAGTTCA
CGTATAATGTCAAAGGTCATCTGGAGCTGGACGATACAGGCCATCCCGTC
AGAATATTAAACGGTTTACGAAAATTCCGGGAAGACGGCAAGTTCACGGC
CAGCATCCGGTCTCTCCTGGAGTTCGCGCTGGCGGAGGCCGAAGAGGACC
TCCCGATGTACGACGAAGACGACGATGACGTCACTCTGCGTGCGCTCAAC
AAATGTCGTCTGAACAGGAAATTTATCGACCTCGCCATCCTGACGCAGAA
CCGGATGTTCGCGTTTCCCTGCCATCGCGCCGTGCTGGCATCCTCAAGCC
CCTACTTCCACTGCCTATTGGACGGCGGGTACCAGGAGTCCGACCAATCA
GAGATCGTCATAGGCGACCTGTCGTCAGGTGTGCTGATGAAGATGATAGA
GTACGCGTACACAGGTAAACTCGTGGTCAACAGATACAACGCGCAGACCA
TGTTCGAAGCTGGTTTGATCCTCCAGTACCCAGTCGTCCAAGAGGCCTGT
TGTGAGTTCATGTCCGACCAGCTAGAACCAGAAAACGTTGTCGGGATTTT
GCAGTTCGCGATTAAGTTTGCGTGCGAAGATCTGAGGACAAAAGCTTTCG
ACTACATCGTTGAGAACCTGTACCTCGTCTCTCAGAGTAAAGAGTTCAGG
TTTCTGAGTAAGGAGACCCTCCTGGACTTGATAAAAAGTGATCAGCAGTT
CTTTTCCTCGGAATGTCTTTACGAAGCCGCGATGACGTGGATAAAGTTTG
AAACCGAAGCTAGAAAGAGATTCTTGAAAGACTTCTTAGAGAGCGTCAGC
CTTCCGCAAATGAAGAGAGGATTCTTCGAGACGGTTGTAGAAAAGGAGTC
GATTGTCTCCAAGTCCTCGCCTGAATGTTATCAACTAATACACGCCGCGA
AACAAAAGATGGAGAAACGGCGGGAAAACGGGGCTTCCAGGGAAGCGATC
GTCATCTTCGGGGGTTCCAACGAAGGAGTGTTCGTTCCGGAGATAGACTT
GTACGACCCGCGGCTGAGTCACTGGGACTCTCTCCCCAGTCTTCCCAGAC
ACACGGAGGGGGCTCGCCACGCCATGGCCGCGCTGAACAACGATCTGATG
GGTGACATGGAGAGCACGATGATGTCCGAGGACCAGGCTACCGCCAACTA
CGTGGAGAGGTCAATGGCAGTGATGGAAAAATCGCGGGAAAAGTTCACGT
ATAATGTCAAAGGTCATCTGGAGCTGGACGATACAGGCCATCCCGTCAGA
ATATTAAACGGTTTACGAAAATTCCGGGAAGACGGCAAGTTCACGGCCAG
CATCCGGTCTCTCCTGGAGTTCGCGCTGGCGGAGGCCGAAGAGGACCTCC
CGATGTACGACGAAGACGACGATGACGTCACTCTGCGTGCGCTCAACAAA
TGTCGTCTGAACAGGAAATTTATCGACCTCGCCATCCTGACGCAGAACCG
GATGTTCGCGTTTCCCTGCCATCGCGCCGTGCTGGCATCCTCAAGCCCCT
ACTTCCACTGCCTATTGGACGGCGGGTACCAGGAGTCCGACCAATCAGAG
ATCGTCATAGGCGACCTGTCGTCAGGTGTGCTGATGAAGATGATAGAGTA
CGCGTACACAGGTAAACTCGTGGTCAACAGATACAACGCGCAGACCATGT
TCGAAGCTGGTTTGATCCTCCAGTACCCAGTCGTCCAAGAGGCCTGTTGT
GAGTTCATGTCCGACCAGCTAGAACCAGAAAACGTTGTCGGGATTTTGCA
GTTCGCGATTAAGTTTGCGTGCGAAGATCTGAGGACAAAAGCTTTCGACT
ACATCGTTGAGAACCTGTACCTCGTCTCTCAGAGTAAAGAGTTCAGGTTT
CTGAGTAAGGAGACCCTCCTGGACTTGATAAAAAGTGATCAGCAGTTCTT
TTCCTCGGAATGTCTTTACGAAGCCGCGATGACGTGGATAAAGTTTGAAA
CCGAAGCTAGAAAGAGATTCTTGAAAGACTTCTTAGAGAGCGTCAGCCTT
CCGCAAATGAAGAGAGGATTCTTCGAGACGGTTGTAGAAAAGGAGTCGAT
TGTCTCCAAGTCCTCGCCTGAATGTTATCAACTAATACACGCCGCGAAAC
AAAAGATGGAGAAACGGCGGGAAAACGGGGCTTCCAGGGAAGCGATCGTC
ATCTTCGGGGGTTCCAACGAAGGAGTGTTCGTTCCGGAGATAGACTTGTA
CGACCCGCGGCTGAGTCACTGGGACTCTCTCCCCAGTCTTCCCAGACACA
CGGAGGGGGCTCGCCACGCCATGGCCGCGCTGAACAACGATCTGATGGGT
GACATGGAGAGCACGATGATGTCCGAGGACCAGGCTACCGCCAACTACGT
GGAGAGGTCAATGGCAGTGATGGAAAAATCGCGGGAAAAGTTCACGTATA
ATGTCAAAGGTCATCTGGAGCTGGACGATACAGGCCATCCCGTCAGAATA
TTAAACGGTTTACGAAAATTCCGGGAAGACGGCAAGTTCACGGCCAGCAT
CCGGTCTCTCCTGGAGTTCGCGCTGGCGGAGGCCGAAGAGGACCTCCCGA
TGTACGACGAAGACGACGATGACGTCACTCTGCGTGCGCTCAACAAATGT
CGTCTGAACAGGAAATTTATCGACCTCGCCATCCTGACGCAGAACCGGAT
GTTCGCGTTTCCCTGCCATCGCGCCGTGCTGGCATCCTCAAGCCCCTACT
TCCACTGCCTATTGGACGGCGGGTACCAGGAGTCCGACCAATCAGAGATC
GTCATAGGCGACCTGTCGTCAGGTGTGCTGATGAAGATGATAGAGTACGC
GTACACAGGTAAACTCGTGGTCAACAGATACAACGCGCAGACCATGTTCG
AAGCTGGTTTGATCCTCCAGTACCCAGTCGTCCAAGAGGCCTGTTGTGAG
TTCATGTCCGACCAGCTAGAACCAGAAAACGTTGTCGGGATTTTGCAGTT
CGCGATTAAGTTTGCGTGCGAAGATCTGAGGACAAAAGCTTTCGACTACA
TCGTTGAGAACCTGTACCTCGTCTCTCAGAGTAAAGAGTTCAGGTTTCTG
AGTAAGGAGACCCTCCTGGACTTGATAAAAAGTGATCAGCAGTTCTTTTC
CTCGGAATGTCTTTACGAAGCCGCGATGACGTGGATAAAGTTTGAAACCG
AAGCTAGAAAGAGATTCTTGAAAGACTTCTTAGAGAGCGTCAGCCTTCCG
CAAATGAAGAGAGGATTCTTCGAGACGGTTGTAGAAAAGGAGTCGATTGT
CTCCAAGTCCTCGCCTGAATGTTATCAACTAATACACGCCGCGAAACAAA
AGATGGAGAAACGGCGGGAAAACGGGGCTTCCAGGGAAGCGATCGTCATC
TTCGGGGGTTCCAACGAAGGAGTGTTCGTTCCGGAGATAGACTTGTACGA
CCCGCGGCTGAGTCACTGGGACTCTCTCCCCAGTCTTCCCAGACACACGG
AGGGGGCTCGCCACGCCATGGCCGCGCTGAACAACGATCTG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97448gene:BL97448Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97448_cuf2transcript:BL97448_cuf2-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97448_cuf2-E1BL97448_cuf2-E1-1564476830-99671Branchiostoma lanceolatumexon
BL97448_cuf2-E2BL97448_cuf2-E2-1564476830-99669Branchiostoma lanceolatumexon
BL97448_cuf2-E3BL97448_cuf2-E3-1564476830-99667Branchiostoma lanceolatumexon
BL97448_cuf2-E4BL97448_cuf2-E4-1564476830-99664Branchiostoma lanceolatumexon
BL97448_cuf2-E5BL97448_cuf2-E5-1564476830-99662Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000010genomeSc0000010:4799160..4802602 -
Properties
Property NameValue
Transcript idBL97448_cuf2
Biotypeprotein_coding