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transcript:BL97439_cuf4 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97439_cuf4
Unique Nametranscript:BL97439_cuf4
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97439_cuf4

>transcript:BL97439_cuf4-protein ID=transcript:BL97439_cuf4-protein|Name=transcript:BL97439_cuf4|organism=Branchiostoma lanceolatum|type=polypeptide|length=238bp
LFLCLLVCAFSHTRNCSRVAFHRGQVGRPLDRTLTPSSWRDAEQRGSHKT
ALSFPKILRLLKTFLRKMAVPSVQLPSGVKMPVLGLGTWKSKPGEVTEAV
KAAIDAGYRHIDCAFNYGNENEVGAGLKAKFDEGVVKREDIFITSKLWNN
FHHPDDVVEAVKKSLTSLGLDYLDLYLIHFPMAYKRGPEMNPKDAEGKVI
GEDIPFTDTWKALEACVESGLLRNIGLSNFNSKQIQAV
Run BLAST on NCBI

mRNA from alignment at Sc0000010:5210931..5214142-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97439_cuf4 ID=transcript:BL97439_cuf4|Name=transcript:BL97439_cuf4|organism=Branchiostoma lanceolatum|type=mRNA|length=3212bp|location=Sequence derived from alignment at Sc0000010:5210931..5214142- (Branchiostoma lanceolatum)
CTGTTTCTTTGTTTGTTGGTTTGTGCCTTTAGTCACACTCGAAATTGCTC AAGGGTCGCTTTTCATAGAGGTCAAGTTGGGAGGCCGTTAGACCGCACTT TGACCCCCAGCAGCTGGCGTGACGCGGAACAGCGAGGAAGTCACAAGACA GCTCTGAGTTTCCCAAAAATTCTCAGACTTCTCAAGACCTTCTTGAGAAA GATGGCTGTGCCTTCCGTCCAGCTTCCTTCGGGTGTTAAGATGCCGGTTC TCGGGCTTGGTACGTGGAAATCAAAGCCAGGAGAGGTAAAGGTTTAATTT TTGATACAGTTGCAACAAAGTGCGGGACTGGACAAACCTTTGTACTCTCC AAGCAGAGGTTAGGCTCCGTCTTGTCTTGGACGTCTGTTTAGGCGTTTTA TCGGGCTTCTTATTTGTCAGGGTTTTTTGTTTTGCCTGGCAGACAGAAAG AAAACTTGACAAAATAGAAATCCCGATAAAAACGCTTAAAAAGACGTCCA AAACAAGACGGATTCTAACCTCTGCTTTGAAAGTAGAACCTTTGTACTTT GTAGAAAAAATTCTACATTCCCCAGTAGCATAACTCCTTAAATTCTCTGG CCTTCATTGCAAAACCGCTATTGCAGCACAGCAGCGAAGGAACTCTTACT GAATCTTTACTTTGAATGCTGATCATGCTTTTCTCCTTTGCTGACGCGGT CGGTTTGAGTCCGTGCGAGGCAAAAAGGGGAGGGGCGGTCAATAAACGCC TGTAACGGATGTTTGCACAAAATCCATTGACTAACGGCGAAACTCACTGG CTGTTCTTTGCTTGCTTCGTTGTTTGTGAGTTGATTTCTTTGTGCATGTA TTCATCAGTTCCTGCCCAGCTGAAGATTTCACTCACTCTACTCACGTCTC TCTAGTCTATTCTACTCTAGATCTGAATTCTGTATTTGAAGAGTCTCACT GAAAAGCGGTGACTAGACACATAAGCGAGCCACACTGGATTAAGAAAACA AATAAAACCAGGGGGCCCAAACCTACACCACTTTTTTTATTACATCACAA GCTATCTGCCACCTACAAATCAAGACCATAGCACGTCCAAGTCTAAAGAT ACAGAAATGGAAGTTCTGCTGCAGTACCAAGGTCACATACCAGGGGGCCC AAAATCAGCCTTGAATTTCGGCTTCACAACACCCGCCCACATACCAAATA GTAATCCGTCAAGAGTCTCTTGAGTTATGCTGACTAGAGTATTCCGGAAA CACAGACAGACAGACACACAGCCACACCTAAAACTATATCTCCATTTTTC ATGGAGATAATAAATTCAAATGTGAAATACAAAAGACGTTAGACAAAACC AATGTCATCATCACGCTACTTTGATACGAGTTTCAGTCGGAATATTTCTG ATACTGTGCAGGTAACTGAAGCAGTGAAAGCTGCCATAGACGCCGGCTAC AGGCACATCGACTGTGCCTTTAATTACGGGAATGAGAACGAAGTCGGCGC GGGGCTGAAGGCCAAGTTCGACGAAGGTGTCGTCAAGAGGGAAGACATCT TCATCACCAGGTGAGCATGTCGTCTGTGTAACCAAGGAGGTTCTGTTTGA ATATGACCTTCTCTGTGTAATACTACGGTCCCAATTACACCAGTGCGTAT CGGGGGTGTAGTCCCGGCCGGGCCCAGAAGCCACAAATTTGTCGCGGTAG CCTGCCGGTTAGGGGGGGGGGGTACCCCCGTTGCTCACACGATTAGCTCA CGGCGTCTATTCGCTACCGGGTCCCGCATTGATTTTAAGGCCGGGATGAA ATGATTCGGGGTCCCGGCCGGGCCCAAAAATAGCCCGCCAACCGCAGGGT GTCCTAACGTAGGGGTCAGGCCCGAAAGTACAAAAACAGCCCGTGAACTA CCCGGAGGGGCCCATTTGTCCAATTGGGACCGAAGTATAACACAAAGTCT CGCTGTTTGGACAGAAGCGGTCCTTTTCTGGACATAGACCTCTAAATATA GGAAGAAAGAGTCGTCAAAAAATGCAATAAGAGGCCAGTATAGTCAATAG TGGAAACTGGCGCGAAACAGACAAAATGTAACAGTTTCGATTGACGCTAC GAAATAATAACACAAAGCTAAGTACAAAATTTGAGCTTTTTGATTGGAAA TACGCATTTGCAGTAGTTGCCCTTCAAGACATGAATTTGATCATATTTTT GTTCTGCAACCCTCTCCTTCCACCGCCTTTTGCCTCCCCAAACGAAGTCA GGTACCCATTTTTCCACTGGGTGGGGTGAGGAAAGTCGTGTATAGCGCCT TTTCCAAGAGAACAACATCGGTGGCATGTCAGGGGATTCGAACCCAGGCC TCTGAGTCAAACACCCTAACGGTTACACCAACACGACGTCACCAACTTCC ATTCTGTACACTTCAGTAAACTCTGGAACAACTTCCACCATCCTGATGAT GTGGTGGAGGCTGTGAAGAAGAGCCTTACAAGCCTGGGGCTGGACTACCT GGACCTCTACCTCATCCACTTCCCGATGGCGTACAAGAGAGGTCCGGAGA TGAATCCCAAAGACGCGGAAGGGAAAGTCATCGGAGAAGATATTCCTTTT ACGGACACGTGGAAGGTGTGTGTTGTTTTGTGGGATTAAAACGGGGCTTG AAATGCTCCATCTCCTGCAATATGTTTTCCTTTCTTTGCGAAAAAATTAT AATTGATTATTGTTATTGGGTAGGCCGAATACTCTCTCTTCGCAGCCAGG GGCTGAATTGCGAGGAGCGCACATTTGGCGGGGCTAGATCGCAAGGGTCT GTAGCGACTGCCATTCGGCGTGCAGGTGACCTCAATACGACAATTACCCC ATGTGCGGCCATAGGACTGTAGGTTTTGAACCACTCACACCGGGAAGGAC CCCTACTCTTTTCGATAAGTGCGGTGGGTTCTTTAACGTGCTCGAGGTGT GGCTCTCCTCAAACACGGGAAATGGCGTCGTCATCTTTAATCCTGGGTAT ACTACTCTTGTCCTTGTACTTGAAGGCATGAATATATATTCTTTTCTGAC CGGGTATTGGGTACTTTGATAATAGTCAGTACGTCTACCAGTTTAGTGGT CATATAATACATCACTTGGCTCCACTTCAGGCGCTGGAAGCCTGTGTTGA GTCCGGGCTGCTGAGGAACATCGGCCTGTCCAACTTCAACAGTAAACAGA TCCAGGCTGTGA

Coding sequence (CDS) from alignment at Sc0000010:5210931..5214142-

>transcript:BL97439_cuf4 ID=transcript:BL97439_cuf4|Name=transcript:BL97439_cuf4|organism=Branchiostoma lanceolatum|type=CDS|length=2856bp|location=Sequence derived from alignment at Sc0000010:5210931..5214142- (Branchiostoma lanceolatum)
CTGTTTCTTTGTTTGTTGGTTTGTGCCTTTAGTCACACTCGAAATTGCTC
AAGGGTCGCTTTTCATAGAGGTCAAGTTGGGAGGCCGTTAGACCGCACTT
TGACCCCCAGCAGCTGGCGTGACGCGGAACAGCGAGGAAGTCACAAGACA
GCTCTGAGTTTCCCAAAAATTCTCAGACTTCTCAAGACCTTCTTGAGAAA
GATGGCTGTGCCTTCCGTCCAGCTTCCTTCGGGTGTTAAGATGCCGGTTC
TCGGGCTTGGTACGTGGAAATCAAAGCCAGGAGAGGTAACTGAAGCAGTG
AAAGCTGCCATAGACGCCGGCTACAGGCACATCGACTGTGCCTTTAATTA
CGGGAATGAGAACGAAGTCGGCGCGGGGCTGAAGGCCAAGTTCGACGAAG
GTGTCGTCAAGAGGGAAGACATCTTCATCACCAGTAAACTCTGGAACAAC
TTCCACCATCCTGATGATGTGGTGGAGGCTGTGAAGAAGAGCCTTACAAG
CCTGGGGCTGGACTACCTGGACCTCTACCTCATCCACTTCCCGATGGCGT
ACAAGAGAGGTCCGGAGATGAATCCCAAAGACGCGGAAGGGAAAGTCATC
GGAGAAGATATTCCTTTTACGGACACGTGGAAGGCGCTGGAAGCCTGTGT
TGAGTCCGGGCTGCTGAGGAACATCGGCCTGTCCAACTTCAACAGTAAAC
AGATCCAGGCTGTGCTGTTTCTTTGTTTGTTGGTTTGTGCCTTTAGTCAC
ACTCGAAATTGCTCAAGGGTCGCTTTTCATAGAGGTCAAGTTGGGAGGCC
GTTAGACCGCACTTTGACCCCCAGCAGCTGGCGTGACGCGGAACAGCGAG
GAAGTCACAAGACAGCTCTGAGTTTCCCAAAAATTCTCAGACTTCTCAAG
ACCTTCTTGAGAAAGATGGCTGTGCCTTCCGTCCAGCTTCCTTCGGGTGT
TAAGATGCCGGTTCTCGGGCTTGGTACGTGGAAATCAAAGCCAGGAGAGG
TAACTGAAGCAGTGAAAGCTGCCATAGACGCCGGCTACAGGCACATCGAC
TGTGCCTTTAATTACGGGAATGAGAACGAAGTCGGCGCGGGGCTGAAGGC
CAAGTTCGACGAAGGTGTCGTCAAGAGGGAAGACATCTTCATCACCAGTA
AACTCTGGAACAACTTCCACCATCCTGATGATGTGGTGGAGGCTGTGAAG
AAGAGCCTTACAAGCCTGGGGCTGGACTACCTGGACCTCTACCTCATCCA
CTTCCCGATGGCGTACAAGAGAGGTCCGGAGATGAATCCCAAAGACGCGG
AAGGGAAAGTCATCGGAGAAGATATTCCTTTTACGGACACGTGGAAGGCG
CTGGAAGCCTGTGTTGAGTCCGGGCTGCTGAGGAACATCGGCCTGTCCAA
CTTCAACAGTAAACAGATCCAGGCTGTGCTGTTTCTTTGTTTGTTGGTTT
GTGCCTTTAGTCACACTCGAAATTGCTCAAGGGTCGCTTTTCATAGAGGT
CAAGTTGGGAGGCCGTTAGACCGCACTTTGACCCCCAGCAGCTGGCGTGA
CGCGGAACAGCGAGGAAGTCACAAGACAGCTCTGAGTTTCCCAAAAATTC
TCAGACTTCTCAAGACCTTCTTGAGAAAGATGGCTGTGCCTTCCGTCCAG
CTTCCTTCGGGTGTTAAGATGCCGGTTCTCGGGCTTGGTACGTGGAAATC
AAAGCCAGGAGAGGTAACTGAAGCAGTGAAAGCTGCCATAGACGCCGGCT
ACAGGCACATCGACTGTGCCTTTAATTACGGGAATGAGAACGAAGTCGGC
GCGGGGCTGAAGGCCAAGTTCGACGAAGGTGTCGTCAAGAGGGAAGACAT
CTTCATCACCAGTAAACTCTGGAACAACTTCCACCATCCTGATGATGTGG
TGGAGGCTGTGAAGAAGAGCCTTACAAGCCTGGGGCTGGACTACCTGGAC
CTCTACCTCATCCACTTCCCGATGGCGTACAAGAGAGGTCCGGAGATGAA
TCCCAAAGACGCGGAAGGGAAAGTCATCGGAGAAGATATTCCTTTTACGG
ACACGTGGAAGGCGCTGGAAGCCTGTGTTGAGTCCGGGCTGCTGAGGAAC
ATCGGCCTGTCCAACTTCAACAGTAAACAGATCCAGGCTGTGCTGTTTCT
TTGTTTGTTGGTTTGTGCCTTTAGTCACACTCGAAATTGCTCAAGGGTCG
CTTTTCATAGAGGTCAAGTTGGGAGGCCGTTAGACCGCACTTTGACCCCC
AGCAGCTGGCGTGACGCGGAACAGCGAGGAAGTCACAAGACAGCTCTGAG
TTTCCCAAAAATTCTCAGACTTCTCAAGACCTTCTTGAGAAAGATGGCTG
TGCCTTCCGTCCAGCTTCCTTCGGGTGTTAAGATGCCGGTTCTCGGGCTT
GGTACGTGGAAATCAAAGCCAGGAGAGGTAACTGAAGCAGTGAAAGCTGC
CATAGACGCCGGCTACAGGCACATCGACTGTGCCTTTAATTACGGGAATG
AGAACGAAGTCGGCGCGGGGCTGAAGGCCAAGTTCGACGAAGGTGTCGTC
AAGAGGGAAGACATCTTCATCACCAGTAAACTCTGGAACAACTTCCACCA
TCCTGATGATGTGGTGGAGGCTGTGAAGAAGAGCCTTACAAGCCTGGGGC
TGGACTACCTGGACCTCTACCTCATCCACTTCCCGATGGCGTACAAGAGA
GGTCCGGAGATGAATCCCAAAGACGCGGAAGGGAAAGTCATCGGAGAAGA
TATTCCTTTTACGGACACGTGGAAGGCGCTGGAAGCCTGTGTTGAGTCCG
GGCTGCTGAGGAACATCGGCCTGTCCAACTTCAACAGTAAACAGATCCAG
GCTGTG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97439gene:BL97439Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97439_cuf4transcript:BL97439_cuf4-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97439_cuf4-E1BL97439_cuf4-E1-1564476830-99880Branchiostoma lanceolatumexon
BL97439_cuf4-E2BL97439_cuf4-E2-1564476830-99878Branchiostoma lanceolatumexon
BL97439_cuf4-E3BL97439_cuf4-E3-1564476830-99876Branchiostoma lanceolatumexon
BL97439_cuf4-E4BL97439_cuf4-E4-1564476830-99874Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000010genomeSc0000010:5210931..5214142 -
Properties
Property NameValue
Transcript idBL97439_cuf4
Biotypeprotein_coding