|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97439_cuf4 >transcript:BL97439_cuf4-protein ID=transcript:BL97439_cuf4-protein|Name=transcript:BL97439_cuf4|organism=Branchiostoma lanceolatum|type=polypeptide|length=238bp
LFLCLLVCAFSHTRNCSRVAFHRGQVGRPLDRTLTPSSWRDAEQRGSHKT
ALSFPKILRLLKTFLRKMAVPSVQLPSGVKMPVLGLGTWKSKPGEVTEAV
KAAIDAGYRHIDCAFNYGNENEVGAGLKAKFDEGVVKREDIFITSKLWNN
FHHPDDVVEAVKKSLTSLGLDYLDLYLIHFPMAYKRGPEMNPKDAEGKVI
GEDIPFTDTWKALEACVESGLLRNIGLSNFNSKQIQAV Run BLAST on NCBI mRNA from alignment at Sc0000010:5210931..5214142- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97439_cuf4 ID=transcript:BL97439_cuf4|Name=transcript:BL97439_cuf4|organism=Branchiostoma lanceolatum|type=mRNA|length=3212bp|location=Sequence derived from alignment at Sc0000010:5210931..5214142- (Branchiostoma lanceolatum)
CTGTTTCTTTGTTTGTTGGTTTGTGCCTTTAGTCACACTCGAAATTGCTC
AAGGGTCGCTTTTCATAGAGGTCAAGTTGGGAGGCCGTTAGACCGCACTT
TGACCCCCAGCAGCTGGCGTGACGCGGAACAGCGAGGAAGTCACAAGACA
GCTCTGAGTTTCCCAAAAATTCTCAGACTTCTCAAGACCTTCTTGAGAAA
GATGGCTGTGCCTTCCGTCCAGCTTCCTTCGGGTGTTAAGATGCCGGTTC
TCGGGCTTGGTACGTGGAAATCAAAGCCAGGAGAGGTAAAGGTTTAATTT
TTGATACAGTTGCAACAAAGTGCGGGACTGGACAAACCTTTGTACTCTCC
AAGCAGAGGTTAGGCTCCGTCTTGTCTTGGACGTCTGTTTAGGCGTTTTA
TCGGGCTTCTTATTTGTCAGGGTTTTTTGTTTTGCCTGGCAGACAGAAAG
AAAACTTGACAAAATAGAAATCCCGATAAAAACGCTTAAAAAGACGTCCA
AAACAAGACGGATTCTAACCTCTGCTTTGAAAGTAGAACCTTTGTACTTT
GTAGAAAAAATTCTACATTCCCCAGTAGCATAACTCCTTAAATTCTCTGG
CCTTCATTGCAAAACCGCTATTGCAGCACAGCAGCGAAGGAACTCTTACT
GAATCTTTACTTTGAATGCTGATCATGCTTTTCTCCTTTGCTGACGCGGT
CGGTTTGAGTCCGTGCGAGGCAAAAAGGGGAGGGGCGGTCAATAAACGCC
TGTAACGGATGTTTGCACAAAATCCATTGACTAACGGCGAAACTCACTGG
CTGTTCTTTGCTTGCTTCGTTGTTTGTGAGTTGATTTCTTTGTGCATGTA
TTCATCAGTTCCTGCCCAGCTGAAGATTTCACTCACTCTACTCACGTCTC
TCTAGTCTATTCTACTCTAGATCTGAATTCTGTATTTGAAGAGTCTCACT
GAAAAGCGGTGACTAGACACATAAGCGAGCCACACTGGATTAAGAAAACA
AATAAAACCAGGGGGCCCAAACCTACACCACTTTTTTTATTACATCACAA
GCTATCTGCCACCTACAAATCAAGACCATAGCACGTCCAAGTCTAAAGAT
ACAGAAATGGAAGTTCTGCTGCAGTACCAAGGTCACATACCAGGGGGCCC
AAAATCAGCCTTGAATTTCGGCTTCACAACACCCGCCCACATACCAAATA
GTAATCCGTCAAGAGTCTCTTGAGTTATGCTGACTAGAGTATTCCGGAAA
CACAGACAGACAGACACACAGCCACACCTAAAACTATATCTCCATTTTTC
ATGGAGATAATAAATTCAAATGTGAAATACAAAAGACGTTAGACAAAACC
AATGTCATCATCACGCTACTTTGATACGAGTTTCAGTCGGAATATTTCTG
ATACTGTGCAGGTAACTGAAGCAGTGAAAGCTGCCATAGACGCCGGCTAC
AGGCACATCGACTGTGCCTTTAATTACGGGAATGAGAACGAAGTCGGCGC
GGGGCTGAAGGCCAAGTTCGACGAAGGTGTCGTCAAGAGGGAAGACATCT
TCATCACCAGGTGAGCATGTCGTCTGTGTAACCAAGGAGGTTCTGTTTGA
ATATGACCTTCTCTGTGTAATACTACGGTCCCAATTACACCAGTGCGTAT
CGGGGGTGTAGTCCCGGCCGGGCCCAGAAGCCACAAATTTGTCGCGGTAG
CCTGCCGGTTAGGGGGGGGGGGTACCCCCGTTGCTCACACGATTAGCTCA
CGGCGTCTATTCGCTACCGGGTCCCGCATTGATTTTAAGGCCGGGATGAA
ATGATTCGGGGTCCCGGCCGGGCCCAAAAATAGCCCGCCAACCGCAGGGT
GTCCTAACGTAGGGGTCAGGCCCGAAAGTACAAAAACAGCCCGTGAACTA
CCCGGAGGGGCCCATTTGTCCAATTGGGACCGAAGTATAACACAAAGTCT
CGCTGTTTGGACAGAAGCGGTCCTTTTCTGGACATAGACCTCTAAATATA
GGAAGAAAGAGTCGTCAAAAAATGCAATAAGAGGCCAGTATAGTCAATAG
TGGAAACTGGCGCGAAACAGACAAAATGTAACAGTTTCGATTGACGCTAC
GAAATAATAACACAAAGCTAAGTACAAAATTTGAGCTTTTTGATTGGAAA
TACGCATTTGCAGTAGTTGCCCTTCAAGACATGAATTTGATCATATTTTT
GTTCTGCAACCCTCTCCTTCCACCGCCTTTTGCCTCCCCAAACGAAGTCA
GGTACCCATTTTTCCACTGGGTGGGGTGAGGAAAGTCGTGTATAGCGCCT
TTTCCAAGAGAACAACATCGGTGGCATGTCAGGGGATTCGAACCCAGGCC
TCTGAGTCAAACACCCTAACGGTTACACCAACACGACGTCACCAACTTCC
ATTCTGTACACTTCAGTAAACTCTGGAACAACTTCCACCATCCTGATGAT
GTGGTGGAGGCTGTGAAGAAGAGCCTTACAAGCCTGGGGCTGGACTACCT
GGACCTCTACCTCATCCACTTCCCGATGGCGTACAAGAGAGGTCCGGAGA
TGAATCCCAAAGACGCGGAAGGGAAAGTCATCGGAGAAGATATTCCTTTT
ACGGACACGTGGAAGGTGTGTGTTGTTTTGTGGGATTAAAACGGGGCTTG
AAATGCTCCATCTCCTGCAATATGTTTTCCTTTCTTTGCGAAAAAATTAT
AATTGATTATTGTTATTGGGTAGGCCGAATACTCTCTCTTCGCAGCCAGG
GGCTGAATTGCGAGGAGCGCACATTTGGCGGGGCTAGATCGCAAGGGTCT
GTAGCGACTGCCATTCGGCGTGCAGGTGACCTCAATACGACAATTACCCC
ATGTGCGGCCATAGGACTGTAGGTTTTGAACCACTCACACCGGGAAGGAC
CCCTACTCTTTTCGATAAGTGCGGTGGGTTCTTTAACGTGCTCGAGGTGT
GGCTCTCCTCAAACACGGGAAATGGCGTCGTCATCTTTAATCCTGGGTAT
ACTACTCTTGTCCTTGTACTTGAAGGCATGAATATATATTCTTTTCTGAC
CGGGTATTGGGTACTTTGATAATAGTCAGTACGTCTACCAGTTTAGTGGT
CATATAATACATCACTTGGCTCCACTTCAGGCGCTGGAAGCCTGTGTTGA
GTCCGGGCTGCTGAGGAACATCGGCCTGTCCAACTTCAACAGTAAACAGA
TCCAGGCTGTGA Coding sequence (CDS) from alignment at Sc0000010:5210931..5214142- >transcript:BL97439_cuf4 ID=transcript:BL97439_cuf4|Name=transcript:BL97439_cuf4|organism=Branchiostoma lanceolatum|type=CDS|length=2856bp|location=Sequence derived from alignment at Sc0000010:5210931..5214142- (Branchiostoma lanceolatum)
CTGTTTCTTTGTTTGTTGGTTTGTGCCTTTAGTCACACTCGAAATTGCTC
AAGGGTCGCTTTTCATAGAGGTCAAGTTGGGAGGCCGTTAGACCGCACTT
TGACCCCCAGCAGCTGGCGTGACGCGGAACAGCGAGGAAGTCACAAGACA
GCTCTGAGTTTCCCAAAAATTCTCAGACTTCTCAAGACCTTCTTGAGAAA
GATGGCTGTGCCTTCCGTCCAGCTTCCTTCGGGTGTTAAGATGCCGGTTC
TCGGGCTTGGTACGTGGAAATCAAAGCCAGGAGAGGTAACTGAAGCAGTG
AAAGCTGCCATAGACGCCGGCTACAGGCACATCGACTGTGCCTTTAATTA
CGGGAATGAGAACGAAGTCGGCGCGGGGCTGAAGGCCAAGTTCGACGAAG
GTGTCGTCAAGAGGGAAGACATCTTCATCACCAGTAAACTCTGGAACAAC
TTCCACCATCCTGATGATGTGGTGGAGGCTGTGAAGAAGAGCCTTACAAG
CCTGGGGCTGGACTACCTGGACCTCTACCTCATCCACTTCCCGATGGCGT
ACAAGAGAGGTCCGGAGATGAATCCCAAAGACGCGGAAGGGAAAGTCATC
GGAGAAGATATTCCTTTTACGGACACGTGGAAGGCGCTGGAAGCCTGTGT
TGAGTCCGGGCTGCTGAGGAACATCGGCCTGTCCAACTTCAACAGTAAAC
AGATCCAGGCTGTGCTGTTTCTTTGTTTGTTGGTTTGTGCCTTTAGTCAC
ACTCGAAATTGCTCAAGGGTCGCTTTTCATAGAGGTCAAGTTGGGAGGCC
GTTAGACCGCACTTTGACCCCCAGCAGCTGGCGTGACGCGGAACAGCGAG
GAAGTCACAAGACAGCTCTGAGTTTCCCAAAAATTCTCAGACTTCTCAAG
ACCTTCTTGAGAAAGATGGCTGTGCCTTCCGTCCAGCTTCCTTCGGGTGT
TAAGATGCCGGTTCTCGGGCTTGGTACGTGGAAATCAAAGCCAGGAGAGG
TAACTGAAGCAGTGAAAGCTGCCATAGACGCCGGCTACAGGCACATCGAC
TGTGCCTTTAATTACGGGAATGAGAACGAAGTCGGCGCGGGGCTGAAGGC
CAAGTTCGACGAAGGTGTCGTCAAGAGGGAAGACATCTTCATCACCAGTA
AACTCTGGAACAACTTCCACCATCCTGATGATGTGGTGGAGGCTGTGAAG
AAGAGCCTTACAAGCCTGGGGCTGGACTACCTGGACCTCTACCTCATCCA
CTTCCCGATGGCGTACAAGAGAGGTCCGGAGATGAATCCCAAAGACGCGG
AAGGGAAAGTCATCGGAGAAGATATTCCTTTTACGGACACGTGGAAGGCG
CTGGAAGCCTGTGTTGAGTCCGGGCTGCTGAGGAACATCGGCCTGTCCAA
CTTCAACAGTAAACAGATCCAGGCTGTGCTGTTTCTTTGTTTGTTGGTTT
GTGCCTTTAGTCACACTCGAAATTGCTCAAGGGTCGCTTTTCATAGAGGT
CAAGTTGGGAGGCCGTTAGACCGCACTTTGACCCCCAGCAGCTGGCGTGA
CGCGGAACAGCGAGGAAGTCACAAGACAGCTCTGAGTTTCCCAAAAATTC
TCAGACTTCTCAAGACCTTCTTGAGAAAGATGGCTGTGCCTTCCGTCCAG
CTTCCTTCGGGTGTTAAGATGCCGGTTCTCGGGCTTGGTACGTGGAAATC
AAAGCCAGGAGAGGTAACTGAAGCAGTGAAAGCTGCCATAGACGCCGGCT
ACAGGCACATCGACTGTGCCTTTAATTACGGGAATGAGAACGAAGTCGGC
GCGGGGCTGAAGGCCAAGTTCGACGAAGGTGTCGTCAAGAGGGAAGACAT
CTTCATCACCAGTAAACTCTGGAACAACTTCCACCATCCTGATGATGTGG
TGGAGGCTGTGAAGAAGAGCCTTACAAGCCTGGGGCTGGACTACCTGGAC
CTCTACCTCATCCACTTCCCGATGGCGTACAAGAGAGGTCCGGAGATGAA
TCCCAAAGACGCGGAAGGGAAAGTCATCGGAGAAGATATTCCTTTTACGG
ACACGTGGAAGGCGCTGGAAGCCTGTGTTGAGTCCGGGCTGCTGAGGAAC
ATCGGCCTGTCCAACTTCAACAGTAAACAGATCCAGGCTGTGCTGTTTCT
TTGTTTGTTGGTTTGTGCCTTTAGTCACACTCGAAATTGCTCAAGGGTCG
CTTTTCATAGAGGTCAAGTTGGGAGGCCGTTAGACCGCACTTTGACCCCC
AGCAGCTGGCGTGACGCGGAACAGCGAGGAAGTCACAAGACAGCTCTGAG
TTTCCCAAAAATTCTCAGACTTCTCAAGACCTTCTTGAGAAAGATGGCTG
TGCCTTCCGTCCAGCTTCCTTCGGGTGTTAAGATGCCGGTTCTCGGGCTT
GGTACGTGGAAATCAAAGCCAGGAGAGGTAACTGAAGCAGTGAAAGCTGC
CATAGACGCCGGCTACAGGCACATCGACTGTGCCTTTAATTACGGGAATG
AGAACGAAGTCGGCGCGGGGCTGAAGGCCAAGTTCGACGAAGGTGTCGTC
AAGAGGGAAGACATCTTCATCACCAGTAAACTCTGGAACAACTTCCACCA
TCCTGATGATGTGGTGGAGGCTGTGAAGAAGAGCCTTACAAGCCTGGGGC
TGGACTACCTGGACCTCTACCTCATCCACTTCCCGATGGCGTACAAGAGA
GGTCCGGAGATGAATCCCAAAGACGCGGAAGGGAAAGTCATCGGAGAAGA
TATTCCTTTTACGGACACGTGGAAGGCGCTGGAAGCCTGTGTTGAGTCCG
GGCTGCTGAGGAACATCGGCCTGTCCAACTTCAACAGTAAACAGATCCAG
GCTGTG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000010 | genome | Sc0000010:5210931..5214142 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97439_cuf4 |
| Biotype | protein_coding |
|
