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transcript:BL97434_cuf2 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97434_cuf2
Unique Nametranscript:BL97434_cuf2
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97434_cuf2

>transcript:BL97434_cuf2-protein ID=transcript:BL97434_cuf2-protein|Name=transcript:BL97434_cuf2|organism=Branchiostoma lanceolatum|type=polypeptide|length=167bp
NLLAKNLREEAHVMLQIQTENVVKLIGVCIDKGHYSIVMEYMPRGTLPHV
LQTLDRPLSWPERLLMCLDASRGLRTIHHPHGGYPARLHGHLSSDAFLVN
NDLRVKLSDFCTTKTRSSIKKKGRRGRRSTVAYLAPEHLQKIHEAPDYSS
EVYRYVIMEYTCTNNKQ
Run BLAST on NCBI

mRNA from alignment at Sc0000402:176534..179457+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97434_cuf2 ID=transcript:BL97434_cuf2|Name=transcript:BL97434_cuf2|organism=Branchiostoma lanceolatum|type=mRNA|length=2924bp|location=Sequence derived from alignment at Sc0000402:176534..179457+ (Branchiostoma lanceolatum)
CCAATCTTCTGGCTAAGAACCTGAGAGAGGAGGCACACGTCATGCTGCAG ATACAGACAGAAAATGTGGTGAAACTGATAGGAGTGTGCATTGACAAAGG TACATACATGTTTGTAAGAACCTCTCTATTGACTTGTCCATCCATCTTTG GATGGAAACTTTAGATTTCACACAGCTTATGTTTTGCTGATTTCTCACAC TCTGTCACAGCACACTCTCTGTGAAGAGAAGCTACCTTCTCAACACTCTT CAAAGTTTTCTGTTGATAACTTGCATTTCACTTTATTTTCCCACTCAGGA CATTATTCCATAGTCATGGAGTACATGCCTAGAGGAACCCTTCCACATGT CCTGCAGACTTTAGACAGGCCGCTGTCCTGGCCAGAACGTCTCCTGATGT GTCTGGACGCTTCCCGTGGTCTCAGAACAATTCACCATCCTCATGGCGGC TACCCTGCCAGGCTGCACGGTCATCTCAGCTCCGACGCTTTCCTGGTCAA CAACGATCTCAGGGTCAAGGTTTGTGCTGTATTCAATTATTCCGAATAGG GGGCTTTATACAACAAAGACGTATCTTCCATGGATATGTGTGCATGGCCC AAATACATTTGTTCATGTATGCTTAAATGTTTTCACACAGTCATCATCCA ACACCTTGCTTAAGAGAGTATGACATTACAACCTATAGGGATATTGATTT TTAAAAGATGTCTTTGTTTTACACATCTGTAGCTGTCTGACTTCTGCACA ACCAAGACAAGGTCATCTATCAAGAAGAAAGGTCGGCGCGGCCGCAGGAG CACTGTTGCCTACCTGGCACCAGAGCATCTGCAGAAGATCCATGAAGCTC CTGATTATTCCTCTGAAGTATACAGGTATGTCATCATGGAATATACTTGT ACAAACAATAAGCAATAAAGATGGACCACTCAGAACCACCTAAGAAAATC TGGAAAATGACATTAGGAGTAAGTTTTACTGCCCTATTGGTACTTTTTGG CACCAATTTTGTATTTGTGCACTATAGTCTATAGCAAGTTTCAGTTCTAA ATCTAACATGAATTCTTTACACAAATTACAGTTTTGGTGTCATCATGTGG GAGATAGTATCCCAGAGAATAGCACATCAAGGTAGGAACTTAACTGCAAC ATTCTACTTAGTAATATGGTAATTTAAGTGGATTCTTTTGAAAAATTTTG GTGTAACATTAGGAACACGGAAAGTTTTCAAAATGTCAATAACTTGCCTT TCTATTTTTTCCCTCAATAGAAAGTCGAGGGGTGGATGAATCAGCAATCC GCAGATTTGTGCTGGAGGAAGGAGGAAGGGAAGACTTGCCAGCTGACTGC AGTCCTCAGCTGAAAGACATCATAGACAAATGTAGAAGCCGTGAAGTGAG GAATAGACCACAGATGACAGGTAAATATACTGAAGATAATGATGTCTACA GTAGTGTAAGGGATTGAAGTGTCACTTGAAGTATCAACATCTTGGAAGTA ATAAAGGTTTTTCTAGTAGTGCCAACAAGAACATACTTCTTGAGGTCTCC TCAATCATTTTATTGGCCTGCACCAATGGTTTTCTGTCTCCCTCCCAACA TCCTGCAACATTCCTGGCAATTTTGTACCATCTCTTACAGTTCAATAAGA ACATGTACATGTAATAATTGTTTTTTGCTATGGCACAACTTTGCCAAAGC AAAGATGATGTATTGACCTATAAAATATTACATTATTCTGAGAGTGTGTT TTTTGTTTGTTTTGCAGCTGTAGTGACAGTTTTGGAGGCTCTCAGTGGGA CTTGTTGTTCTTCTTAACAACTTCATTTTGCCAGGGACAATCGAAAATTC CAGTAATGAAGCAGACTTCGTCATCTATACTAGAAAACCATTAGGAAACT TACGGAACTCAATGATGATGTTTTAAAGGTGTATATTGTAAATAGTTAGG AGTGCATGATAACTTTCTTAAAGTTTTATGTTGTAAATAAAGGTGTGCTA TTTGTTTACTATTGCAGATCGTCCATACAAAAGCATGTTACATTCCCTAT ACATGTATAAACTGCATTCTGATAGCAGTTATATTTGTGATTTGCCATGG GATATTATCAGCATATCAAAGTGTGAAGTCTAAATACGAATGATTTTATA AAATGTTACTGGTTCAATTGACAATATTACAACTGTTCAAGCCCACATAT CTATAAGTTTGTCATCATGAATCTTGTACAATACATATAGTGTATGGCAT GGGTCATTGAGAATGGTGGGTGGGGATGTTTGTTAAAATATTGTACATGT AGTTAATGTTACTAATTGTTGGACCATAAGTATGATTTAGTAGCATACAT AAACAAATTGGATTTCCATATTTGTATTTTATTGTTTGTGATAGTACTCT GCTTGCTCTTAATTTGTCCCCAGGCCACCCGGCCCTGTCCTTCATAGTCA GTCCTCTACAATGACATTCTATATTGTGAATATCTATGACTTCTCAACTG TATATAAGCAATAAACGCCTGAAAAGAGAGACAATGTGAAAGTTGTGTCA AAATGTGTGATTCCTGCCTTGCCCCTGGAGAAAATACACATTCTTTGCAG TTTATGGTACATATAGTTGAAATGCCATGATTGAGAATTGAGACAAGCTG AGTAAAGAGTGATCTGAAAAGAATAGATTTTGAAACAACTGTTCATACCG ATTGTTCAGTCCTTAAGAACCAAGCAAGGGTTTTCGTCATACATATATAA AGTTCAGCTCCCTCGGGGTGCTTCCCAGTCTGAATGAAATAAAAGTCCAC CATTGCAAGCATGTACACTGCCTTGAGTTTTATTAAAATATTATGAATCC AAAATATCATCAGTATGATTTCAGATAGACTGTACGATATCCAATGTCTT GCCATGCATATATATTGAAAGTTG

Coding sequence (CDS) from alignment at Sc0000402:176534..179457+

>transcript:BL97434_cuf2 ID=transcript:BL97434_cuf2|Name=transcript:BL97434_cuf2|organism=Branchiostoma lanceolatum|type=CDS|length=1512bp|location=Sequence derived from alignment at Sc0000402:176534..179457+ (Branchiostoma lanceolatum)
AATCTTCTGGCTAAGAACCTGAGAGAGGAGGCACACGTCATGCTGCAGAT
ACAGACAGAAAATGTGGTGAAACTGATAGGAGTGTGCATTGACAAAGGAC
ATTATTCCATAGTCATGGAGTACATGCCTAGAGGAACCCTTCCACATGTC
CTGCAGACTTTAGACAGGCCGCTGTCCTGGCCAGAACGTCTCCTGATGTG
TCTGGACGCTTCCCGTGGTCTCAGAACAATTCACCATCCTCATGGCGGCT
ACCCTGCCAGGCTGCACGGTCATCTCAGCTCCGACGCTTTCCTGGTCAAC
AACGATCTCAGGGTCAAGCTGTCTGACTTCTGCACAACCAAGACAAGGTC
ATCTATCAAGAAGAAAGGTCGGCGCGGCCGCAGGAGCACTGTTGCCTACC
TGGCACCAGAGCATCTGCAGAAGATCCATGAAGCTCCTGATTATTCCTCT
GAAGTATACAGGTATGTCATCATGGAATATACTTGTACAAACAATAAGCA
ATAAAATCTTCTGGCTAAGAACCTGAGAGAGGAGGCACACGTCATGCTGC
AGATACAGACAGAAAATGTGGTGAAACTGATAGGAGTGTGCATTGACAAA
GGACATTATTCCATAGTCATGGAGTACATGCCTAGAGGAACCCTTCCACA
TGTCCTGCAGACTTTAGACAGGCCGCTGTCCTGGCCAGAACGTCTCCTGA
TGTGTCTGGACGCTTCCCGTGGTCTCAGAACAATTCACCATCCTCATGGC
GGCTACCCTGCCAGGCTGCACGGTCATCTCAGCTCCGACGCTTTCCTGGT
CAACAACGATCTCAGGGTCAAGCTGTCTGACTTCTGCACAACCAAGACAA
GGTCATCTATCAAGAAGAAAGGTCGGCGCGGCCGCAGGAGCACTGTTGCC
TACCTGGCACCAGAGCATCTGCAGAAGATCCATGAAGCTCCTGATTATTC
CTCTGAAGTATACAGGTATGTCATCATGGAATATACTTGTACAAACAATA
AGCAATAAAATCTTCTGGCTAAGAACCTGAGAGAGGAGGCACACGTCATG
CTGCAGATACAGACAGAAAATGTGGTGAAACTGATAGGAGTGTGCATTGA
CAAAGGACATTATTCCATAGTCATGGAGTACATGCCTAGAGGAACCCTTC
CACATGTCCTGCAGACTTTAGACAGGCCGCTGTCCTGGCCAGAACGTCTC
CTGATGTGTCTGGACGCTTCCCGTGGTCTCAGAACAATTCACCATCCTCA
TGGCGGCTACCCTGCCAGGCTGCACGGTCATCTCAGCTCCGACGCTTTCC
TGGTCAACAACGATCTCAGGGTCAAGCTGTCTGACTTCTGCACAACCAAG
ACAAGGTCATCTATCAAGAAGAAAGGTCGGCGCGGCCGCAGGAGCACTGT
TGCCTACCTGGCACCAGAGCATCTGCAGAAGATCCATGAAGCTCCTGATT
ATTCCTCTGAAGTATACAGGTATGTCATCATGGAATATACTTGTACAAAC
AATAAGCAATAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97434gene:BL97434Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97434_cuf2transcript:BL97434_cuf2-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97434_cuf2-E1BL97434_cuf2-E1-1564476830-457733Branchiostoma lanceolatumexon
BL97434_cuf2-E2BL97434_cuf2-E2-1564476830-457735Branchiostoma lanceolatumexon
BL97434_cuf2-E3BL97434_cuf2-E3-1564476830-457738Branchiostoma lanceolatumexon
BL97434_cuf2-E4BL97434_cuf2-E4-1564476830-457740Branchiostoma lanceolatumexon
BL97434_cuf2-E5BL97434_cuf2-E5-1564476830-457742Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000402genomeSc0000402:176534..179457 +
Properties
Property NameValue
Transcript idBL97434_cuf2
Biotypeprotein_coding