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transcript:BL97431_cuf1 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL97431_cuf1
Unique Nametranscript:BL97431_cuf1
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL97431_cuf1

>transcript:BL97431_cuf1-protein ID=transcript:BL97431_cuf1-protein|Name=transcript:BL97431_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=283bp
KCFSETGLIKPGVFAGLGRVKLGTLSLTNNRLRHVPTEAIEHIGNITDLN
LSGNNISAVGPKDFGHHTYFFTLDLSDNKLTSLPEEALMSVDIFMLELSG
NPLVYIGPDAFKHGLFHVGLENTKLRVIDESAFNSSQGIKSLTLNNNSLN
YLPELVFAPLTFYGDPQEILLLDDNPWRCDCQMRDYAKWLQSALNVWVLH
CDAPQRLHGKVLRDVPVDQLTCDCPHLTSPNISTAGSTTVVTAGQRAVLK
CSVTCCPAAAVVWTTPAGMKLSVDSDVTGISVS
Run BLAST on NCBI

mRNA from alignment at Sc0000061:1180729..1183607+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL97431_cuf1 ID=transcript:BL97431_cuf1|Name=transcript:BL97431_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=2879bp|location=Sequence derived from alignment at Sc0000061:1180729..1183607+ (Branchiostoma lanceolatum)
TGAAGTGTTTCTCGGAGACGGGTTTGATAAAGCCCGGTGTGTTCGCCGGA CTTGGCCGTGTTAAGTTGGGGACATTGAGCCTGACGAACAACAGGCTACG TCACGTTCCCACAGAAGCCATTGAGCACATAGGCAATATTACCGACCTGA ATCTGTCCGGAAACAACATCTCAGCTGTCGGTCCCAAGGACTTTGGCCAT CACACGTACTTCTTCACACTAGACTTGAGGTATGTGTTTGGGGTTGGTTG GAAAGAGCTCTCTCTCTCTCAGCTCTCTCTCTCTCTCTCTCTCTCTCTCT CTCACTCTCTCTGTGCCAGTGTCACAGAGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGCCTGTTTGTGTGTGTGTATGTGAGTGCGTCAGTGTGTGT GTGTGTGTGTGCGTGCGTGCGTACGTGCGCGCGTGCGTATATATACATTA TCAACAAACACTTTCCATGTACAGTGACAACAAACTGACGTCGTTACCAG AGGAGGCTCTGATGTCTGTGGACATCTTCATGTTGGAACTGTCCGGAAAT CCGCTTGTGTACATCGGACCGGATGCCTTCAAACACGGACTCTTCCACGT TGGTCTGGAAAATACCAAGCTCCGAGTCATAGGTACGTCAAAGCCCGATT CACAAGGGTCATAGGATGATCATTTGCACCAATAAGCCTTAGATATTGGT GGGAATTTCATACTTGCATCGATTGGAAGCTAAGTGAAGGTTATAGATAA ATCATGCAAATTAGGGCCTAATTTACATAACTGTTGAGGGAATGATACAA TAGGCTACTTTGCTTTATAATTCATGCAAATAAGGACCTCGCTAGCATAT AATCAAGGATAAATCGTCACTCAAAAAAACGAAGGTGTGAGATCGGTGAA CGTTGTTTAGCTTGAAATCAACAGCAGCATTGTATATAAATGTTTTATGG TATGAGCCTCATCTCAGAAAAAAACAACAATGATAAGCCAGATCGATATG CCCACTTTGCATAGTCTCGTAGTCCTGTATCTATACCCTGATAGCATGTG GACTAAACGATGAAATTGCATTTTTCATTAAGAAATCACAAAATGGACAT ACTACTTGATGAAGTCATAGTTCAACAAGCCTACTAAGTAGGAGAGTTCC TGTGTTTGTGATGTTGTTTAGATGAGTCAGCGTTCAACAGCTCTCAGGGC ATCAAATCCCTCACCCTGAACAACAACAGTCTGAACTACCTCCCCGAGCT GGTCTTTGCCCCACTGACGTTCTATGGTGACCCCCAGGAAATCCTTCTAC TGGATGACAACCCCTGGAGGTGCGACTGTCAGATGCGCGACTACGCGAAA TGGCTGCAGTCCGCTTTGGTAAAGCATTTTATTTCTGTCATGATTACCAA GGGTAGTCTAACTCAGTGATATGGCCACTAGTGCTTTAGAATGGGGCTCT GGATCACAAATAACATAAAATCGCATACCAGAGCGTACATGTACAGATAC ATAACAACAAACAAATTCAACATACAGTACATAATAATGATAGGGGAAGG GCTAGCAACCGCTCTCTGTAAGAACAAGAAAAACTGGCGCCCTATATCAC TAAGCACTACAAGGTTAGCAGCATCAACATAATGATAATGATGACGATGC CAATGAATAAATAAAGTCATAATATTCCGGATGAGTAATTATATTTCAAT TCCAATGATAAACGATGATATTGTTTCTGGGCATCATTTTCCTACAATGT TTTTTATACATTAACATTTTCGTCAGAAATCATTTTGTAGTGTGTGTGTA GTCCTTGAAGCGACTAACCCAGTCTTGTTACAGAACGTATGGGTACTTCA TTGTGACGCGCCACAACGTCTGCATGGTAAAGTGCTGCGGGACGTGCCTG TGGACCAGCTGACATGTGACTGTCCCCATCTCACTTCTCCCAACATCAGC ACCGCAGGCAGCACCACTGTGGTCACGGCAGGCCAGAGGGCCGTGCTGAA GTGTAGCGTAAGTTCGGCATCCTTATGTTGTGCCAAGTTTAATAGGCCAA ACAAACTGATTGGATGAAATTCTCTGGGCACCCAAAAGCTGATGCGAGCG TGCGAAAAGGAACGTTCGTACCTTCATTACGAAATCTAACTGGTCAGAAA TGTTGAACAAATGACTAAACACACAGGACATTGTATAACAAATAATACAT TTTTGTTCTTTCACATCTTCTATGACTTTAGAGGACTTAGCCAATTGATA TCCATTTTCCAATATTTTCTTTCAATTTACTGAGCATATTTTCTCATTTT TCATCTTCTTTGTACGATTCACAGTATGGTCGCAAACCTTTTTTCTTCAC GTTGGAAACGGACGCAATCCATATAACAAAATTATGGTGTGACCGTATCA TTATATGGATCTGGAATCCATATGGAAAATAACATCTAACAATATATATT TTTTTCAAGTCAACGATCCCCTCCGATTTGACTGAACCTTAGCTTCCTTC GCAGACCTTCTAGGTGCGACCGGCATTTCGATGATATTTCTGGGGAGCGC TGATTTGCGATTTTCAACGTGGGCCAGGCTCGAGGAGCTCGATAGCACAT GCAAATCAGCGCTCCCTCCAAAATGAAAAAAAAAAAAAAAAAAAAAAAAT CTGCCGCACCTAGAAGGTCTGCGANAAAAAAAAAAAAAAAAAAAAAAAAA AAAAACGTCTGCCGCACCTAGAAGGTCTGCGAAGGAGGCAAATGCATTAA TGAACCAAAGGGTGAAACTTGTTCCCCTCGATCAGGTCACGTGCTGCCCT GCCGCAGCTGTCGTCTGGACGACCCCGGCCGGGATGAAGCTGAGCGTAGA CTCTGACGTCACAGGTATCTCCGTGTCTG

Coding sequence (CDS) from alignment at Sc0000061:1180729..1183607+

>transcript:BL97431_cuf1 ID=transcript:BL97431_cuf1|Name=transcript:BL97431_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=4245bp|location=Sequence derived from alignment at Sc0000061:1180729..1183607+ (Branchiostoma lanceolatum)
AAGTGTTTCTCGGAGACGGGTTTGATAAAGCCCGGTGTGTTCGCCGGACT
TGGCCGTGTTAAGTTGGGGACATTGAGCCTGACGAACAACAGGCTACGTC
ACGTTCCCACAGAAGCCATTGAGCACATAGGCAATATTACCGACCTGAAT
CTGTCCGGAAACAACATCTCAGCTGTCGGTCCCAAGGACTTTGGCCATCA
CACGTACTTCTTCACACTAGACTTGAGTGACAACAAACTGACGTCGTTAC
CAGAGGAGGCTCTGATGTCTGTGGACATCTTCATGTTGGAACTGTCCGGA
AATCCGCTTGTGTACATCGGACCGGATGCCTTCAAACACGGACTCTTCCA
CGTTGGTCTGGAAAATACCAAGCTCCGAGTCATAGATGAGTCAGCGTTCA
ACAGCTCTCAGGGCATCAAATCCCTCACCCTGAACAACAACAGTCTGAAC
TACCTCCCCGAGCTGGTCTTTGCCCCACTGACGTTCTATGGTGACCCCCA
GGAAATCCTTCTACTGGATGACAACCCCTGGAGGTGCGACTGTCAGATGC
GCGACTACGCGAAATGGCTGCAGTCCGCTTTGAACGTATGGGTACTTCAT
TGTGACGCGCCACAACGTCTGCATGGTAAAGTGCTGCGGGACGTGCCTGT
GGACCAGCTGACATGTGACTGTCCCCATCTCACTTCTCCCAACATCAGCA
CCGCAGGCAGCACCACTGTGGTCACGGCAGGCCAGAGGGCCGTGCTGAAG
TGTAGCGTCACGTGCTGCCCTGCCGCAGCTGTCGTCTGGACGACCCCGGC
CGGGATGAAGCTGAGCGTAGACTCTGACGTCACAGGTATCTCCGTGTCTA
AGTGTTTCTCGGAGACGGGTTTGATAAAGCCCGGTGTGTTCGCCGGACTT
GGCCGTGTTAAGTTGGGGACATTGAGCCTGACGAACAACAGGCTACGTCA
CGTTCCCACAGAAGCCATTGAGCACATAGGCAATATTACCGACCTGAATC
TGTCCGGAAACAACATCTCAGCTGTCGGTCCCAAGGACTTTGGCCATCAC
ACGTACTTCTTCACACTAGACTTGAGTGACAACAAACTGACGTCGTTACC
AGAGGAGGCTCTGATGTCTGTGGACATCTTCATGTTGGAACTGTCCGGAA
ATCCGCTTGTGTACATCGGACCGGATGCCTTCAAACACGGACTCTTCCAC
GTTGGTCTGGAAAATACCAAGCTCCGAGTCATAGATGAGTCAGCGTTCAA
CAGCTCTCAGGGCATCAAATCCCTCACCCTGAACAACAACAGTCTGAACT
ACCTCCCCGAGCTGGTCTTTGCCCCACTGACGTTCTATGGTGACCCCCAG
GAAATCCTTCTACTGGATGACAACCCCTGGAGGTGCGACTGTCAGATGCG
CGACTACGCGAAATGGCTGCAGTCCGCTTTGAACGTATGGGTACTTCATT
GTGACGCGCCACAACGTCTGCATGGTAAAGTGCTGCGGGACGTGCCTGTG
GACCAGCTGACATGTGACTGTCCCCATCTCACTTCTCCCAACATCAGCAC
CGCAGGCAGCACCACTGTGGTCACGGCAGGCCAGAGGGCCGTGCTGAAGT
GTAGCGTCACGTGCTGCCCTGCCGCAGCTGTCGTCTGGACGACCCCGGCC
GGGATGAAGCTGAGCGTAGACTCTGACGTCACAGGTATCTCCGTGTCTAA
GTGTTTCTCGGAGACGGGTTTGATAAAGCCCGGTGTGTTCGCCGGACTTG
GCCGTGTTAAGTTGGGGACATTGAGCCTGACGAACAACAGGCTACGTCAC
GTTCCCACAGAAGCCATTGAGCACATAGGCAATATTACCGACCTGAATCT
GTCCGGAAACAACATCTCAGCTGTCGGTCCCAAGGACTTTGGCCATCACA
CGTACTTCTTCACACTAGACTTGAGTGACAACAAACTGACGTCGTTACCA
GAGGAGGCTCTGATGTCTGTGGACATCTTCATGTTGGAACTGTCCGGAAA
TCCGCTTGTGTACATCGGACCGGATGCCTTCAAACACGGACTCTTCCACG
TTGGTCTGGAAAATACCAAGCTCCGAGTCATAGATGAGTCAGCGTTCAAC
AGCTCTCAGGGCATCAAATCCCTCACCCTGAACAACAACAGTCTGAACTA
CCTCCCCGAGCTGGTCTTTGCCCCACTGACGTTCTATGGTGACCCCCAGG
AAATCCTTCTACTGGATGACAACCCCTGGAGGTGCGACTGTCAGATGCGC
GACTACGCGAAATGGCTGCAGTCCGCTTTGAACGTATGGGTACTTCATTG
TGACGCGCCACAACGTCTGCATGGTAAAGTGCTGCGGGACGTGCCTGTGG
ACCAGCTGACATGTGACTGTCCCCATCTCACTTCTCCCAACATCAGCACC
GCAGGCAGCACCACTGTGGTCACGGCAGGCCAGAGGGCCGTGCTGAAGTG
TAGCGTCACGTGCTGCCCTGCCGCAGCTGTCGTCTGGACGACCCCGGCCG
GGATGAAGCTGAGCGTAGACTCTGACGTCACAGGTATCTCCGTGTCTAAG
TGTTTCTCGGAGACGGGTTTGATAAAGCCCGGTGTGTTCGCCGGACTTGG
CCGTGTTAAGTTGGGGACATTGAGCCTGACGAACAACAGGCTACGTCACG
TTCCCACAGAAGCCATTGAGCACATAGGCAATATTACCGACCTGAATCTG
TCCGGAAACAACATCTCAGCTGTCGGTCCCAAGGACTTTGGCCATCACAC
GTACTTCTTCACACTAGACTTGAGTGACAACAAACTGACGTCGTTACCAG
AGGAGGCTCTGATGTCTGTGGACATCTTCATGTTGGAACTGTCCGGAAAT
CCGCTTGTGTACATCGGACCGGATGCCTTCAAACACGGACTCTTCCACGT
TGGTCTGGAAAATACCAAGCTCCGAGTCATAGATGAGTCAGCGTTCAACA
GCTCTCAGGGCATCAAATCCCTCACCCTGAACAACAACAGTCTGAACTAC
CTCCCCGAGCTGGTCTTTGCCCCACTGACGTTCTATGGTGACCCCCAGGA
AATCCTTCTACTGGATGACAACCCCTGGAGGTGCGACTGTCAGATGCGCG
ACTACGCGAAATGGCTGCAGTCCGCTTTGAACGTATGGGTACTTCATTGT
GACGCGCCACAACGTCTGCATGGTAAAGTGCTGCGGGACGTGCCTGTGGA
CCAGCTGACATGTGACTGTCCCCATCTCACTTCTCCCAACATCAGCACCG
CAGGCAGCACCACTGTGGTCACGGCAGGCCAGAGGGCCGTGCTGAAGTGT
AGCGTCACGTGCTGCCCTGCCGCAGCTGTCGTCTGGACGACCCCGGCCGG
GATGAAGCTGAGCGTAGACTCTGACGTCACAGGTATCTCCGTGTCTAAGT
GTTTCTCGGAGACGGGTTTGATAAAGCCCGGTGTGTTCGCCGGACTTGGC
CGTGTTAAGTTGGGGACATTGAGCCTGACGAACAACAGGCTACGTCACGT
TCCCACAGAAGCCATTGAGCACATAGGCAATATTACCGACCTGAATCTGT
CCGGAAACAACATCTCAGCTGTCGGTCCCAAGGACTTTGGCCATCACACG
TACTTCTTCACACTAGACTTGAGTGACAACAAACTGACGTCGTTACCAGA
GGAGGCTCTGATGTCTGTGGACATCTTCATGTTGGAACTGTCCGGAAATC
CGCTTGTGTACATCGGACCGGATGCCTTCAAACACGGACTCTTCCACGTT
GGTCTGGAAAATACCAAGCTCCGAGTCATAGATGAGTCAGCGTTCAACAG
CTCTCAGGGCATCAAATCCCTCACCCTGAACAACAACAGTCTGAACTACC
TCCCCGAGCTGGTCTTTGCCCCACTGACGTTCTATGGTGACCCCCAGGAA
ATCCTTCTACTGGATGACAACCCCTGGAGGTGCGACTGTCAGATGCGCGA
CTACGCGAAATGGCTGCAGTCCGCTTTGAACGTATGGGTACTTCATTGTG
ACGCGCCACAACGTCTGCATGGTAAAGTGCTGCGGGACGTGCCTGTGGAC
CAGCTGACATGTGACTGTCCCCATCTCACTTCTCCCAACATCAGCACCGC
AGGCAGCACCACTGTGGTCACGGCAGGCCAGAGGGCCGTGCTGAAGTGTA
GCGTCACGTGCTGCCCTGCCGCAGCTGTCGTCTGGACGACCCCGGCCGGG
ATGAAGCTGAGCGTAGACTCTGACGTCACAGGTATCTCCGTGTCT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL97431gene:BL97431Branchiostoma lanceolatumgene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL97431_cuf1transcript:BL97431_cuf1-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL97431_cuf1-E1BL97431_cuf1-E1-1564476830-247899Branchiostoma lanceolatumexon
BL97431_cuf1-E2BL97431_cuf1-E2-1564476830-247901Branchiostoma lanceolatumexon
BL97431_cuf1-E3BL97431_cuf1-E3-1564476830-247903Branchiostoma lanceolatumexon
BL97431_cuf1-E4BL97431_cuf1-E4-1564476830-247905Branchiostoma lanceolatumexon
BL97431_cuf1-E5BL97431_cuf1-E5-1564476830-247908Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000061genomeSc0000061:1180729..1183607 +
Properties
Property NameValue
Transcript idBL97431_cuf1
Biotypeprotein_coding