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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL97429_cuf17 >transcript:BL97429_cuf17-protein ID=transcript:BL97429_cuf17-protein|Name=transcript:BL97429_cuf17|organism=Branchiostoma lanceolatum|type=polypeptide|length=133bp
TSDRIRLVGGSTSSEGRLEVRPADSYVWGTVCDDFFDAQDAEVACRTLGY
ATAIEYGDSAALDFGQGTGQIYMDDLGCSGTETTLFDCSYAGWGVHNCGH
SEDVGVVCATSDDEDDAGAPIAILIGIFCSFGV Run BLAST on NCBI mRNA from alignment at Sc0000055:1083423..1087053- Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL97429_cuf17 ID=transcript:BL97429_cuf17|Name=transcript:BL97429_cuf17|organism=Branchiostoma lanceolatum|type=mRNA|length=3631bp|location=Sequence derived from alignment at Sc0000055:1083423..1087053- (Branchiostoma lanceolatum)
GACGTCCGATAGAATCCGGCTTGTTGGCGGTTCTACCTCCTCTGAAGGCC
GCCTGGAAGTCCGTCCAGCCGACAGTTACGTCTGGGGGACCGTCTGTGAC
GACTTCTTCGACGCGCAAGACGCCGAAGTCGCCTGCAGAACTCTGGGATA
TGCCACCGCCATAGAATATGGTGATTCGGCAGCTTTAGATTTCGGGCAAG
GTATAATTCCTTTTTTGCTTGTGAGAAAAAAATATTCTAAAACCGCCCTA
TTCTGTGGCTTATGAGGATAAATACCAAGCATGTGAGGTCTCAGTGCCAC
AACTTCAGCTTTAAACAATATCTAGTAACAGGAAATGTATTTTCTGTAAT
AAACATTTCTTGCACACACGTATTTTACAGGCACCGGGCAAATCTACATG
GATGATCTTGGATGCTCTGGGACCGAGACTACTTTATTCGACTGCTCGTA
CGCAGGGTGGGGAGTGCATAACTGTGGGCATAGTGAAGATGTCGGTGTCG
TCTGCGCCACGTCAGGTTGGCTATGTCCAGTGTGACGCGTTCATCTTTGT
GTGGCTTTGTAACGGGTAAAATTACATACGAGTCAGTCAGTAAGTTTTGC
CTTTTGCTTTATAACAGGCTCATTTTTTATCAAATGAGTTGAAATTTGGC
ACAAATGTAAAGGCATCGTCTTGGGCCTTGTCAAATTTTCATAGATTTCA
ACTCATTTGATGAAAAAATGAGCCTGTTATGAAGCAAAGGGCAAAACTTT
CAAAGACTCACCCTCGTATGTAATTTTACCCGTTACAAAGACAGTGTTGA
CATCTATATGACGTCATATTGAATTTTAACAGGATCTCGTGAAATTCAAA
ACAATAGCTCATGTGAAATATGCAGTGAAACGTACGGAAGCATTTTTTTG
GGTACAAAGACTTCATGTCACGATCAACTAGACATGTCAATGTTCCGTGT
GTCGAACTAACGGTCTTTCGTTGTCAGACGTTGTTGACTTGAAATAAATA
AGACTTCCTGTATTAAATTGTATTGACAGTAAAATAGTAGCAGGCAGTCT
TGTGTTTCACAACATGAATTAATTTCAATCTTATTACAATGCTAGACTTT
CTTCCAAAACAAAGGTTGGAAGAAACATAAGCATTGTAATATGATTACTA
CCAACATACCGACTATGATATTGCAATTTAATTCTTCAAAATGTAAGTAA
GTTTTGGGCAACTTGCAATTTTGCAAGTACATGTAACCAAAAAATAGCAT
TTCGATCCCTGTAACTACAGACGAAGCCACTTAATTGCACCTCGGATAAA
CGCACCTTCCATTTAATTGCACCAAATCCCAATATCCAAAACCGGTTCCC
ATTCACTGCATTGTTAGTGACTCCGCATATCTGCACCGCGCATGGTCACC
AATGCCGGATAACTGCACCAATTTTTTTCAAAAATCCTCTACAAGTTAAC
GGAAAAGGTGCGCTAAAATCGGCAAACGCGGTACAAATGAGCCGATACCT
GCCGGTGTAAAGGCGCAATACCGCCAATATGTTTAAAACTGTTTTGAGTA
ACAAAAGAAGGCGGTCTCCATTGACAGTTACGTTGATAGGAATCGTATGG
GAGGTCCCGGGCGGGTCACCCGTAATCAGTAACCAAGTTTTAGTTTCAAT
TCCTAGTTTCATGGCGGTACATGATTTACGTAAATCGACAACTGCACTCT
ACGTAATGTAACACAGAAACTGTTATCCCATGNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NTTTTTTCAAAAATCCTCGACAAGTTAACTGAAAAGGTGCGCTAAAATCG
GCAAACGCGGTACAAATGAGCCGATACCTGCCGGTGTAAAGGCGCAATAC
CGCCAATATGTGTAAAACTGTTTTGAGTAACAAAACAAGGCGGTCTCCAT
TGACAGTTACGTTGATAGGAATCGTATGGGAGGTCCCGGGCGGGTCACCC
GTAATCAGTAACCAAGTTTTAGTTTCAATTCCTAGTTTCATGGCGGTACA
TGATTTACGTAAATCGACAACTGCACTCTACGTAATGTAACACAGAAACT
GTTATCCCATGAGTGGCATGACGATGTTTCAGAATGCCTCCCCTGTAACA
TTACGTGTGTTGTAATGCGGTAGATCGAATGGAAAAATTCAAAAGATCAA
AACAGGTTCGTAGTCATTTCTTTATTTTCAGCAAAGGGTCAATAAATAAA
GTTAATAACTGAATAATTTCGTCTGTTTTCTTTGTGCTAGTGTTTCTGAC
TAACAATACACCCCCTCGCCCATGGTGGTGCGGTCCAGCTGGGCATTTCG
CATAATTGCACCAGCCGGATAATTGCACCAAAAACGCTGACAAATGGGTG
GTGCAGTTAAGCGGATTCTACTGTATATGCAAAATTGCAACTTGAGAATA
TTTCTATTTACCTATAAATCCTGAAAATCATGTGCAAATTGCACGTTGCA
TCACGTTGGTATTATGAGCCCGGTAAAATGACATGGTCTATAGCCGAACA
ATATATGCTCATTTTATCCTTACTCAAACTCATTCATAATTTTGGCCCAA
AAATGAAAAAAAAGTTGAACAGTTGACAAAATGGCAAGAGGGGACACACG
ACGATTGCAGTCTGTTCTAGGACAAACGGCGATCTGTATACAGTAGAGTA
AGGATTGCCACCTCTTAGTATGTAATCAAATCTATCAACAGAATGGAGCA
TATCAAATTCACTTGAACAAATCGGAAATAAGGGTGAATAGCTTTGATCG
TTAATCCTCATATCTTGAACAGTTCATGATAAAGTGACGTTCGTCTTCAG
TTTCATTCATGTGGGTAGAATGGACAAAGCTTGTGAGCATGGGAAATGTT
ACGATACCTTCCGGTTTCAATGTAGAATACTGTCGTGTTTCAGTTCTATA
ACTGTAAGATTTTCTTGATATCCAGGGTTACAGCCTGGAGCTTATAGTCC
TCTCGGAAATACGTGGTTGATTTGTGCCAGTTCGATATAGTTTTGATTAC
CCATGTGTCACAACACAGCTGGATACGTTATGGTGAATAGAACAATTATG
TCATATTCGCTAAGGCTACACCAAGTAATTTTTATGGATGACGTCCGCGC
GCGCATTGATTTTGGTCTGTTCCCAGAAAAAACAAACAAGAAATTCCGCT
TCCTGTAACTATGATCAAAGAGTTACGACAGTGCTGCAAATCGAAAGAAA
CAGGACAGGACAACAACTGCTGTTCAACTTCAACTGATTTATTCAAATTA
TTGCTTTTTAATGATGAATAAAAGAATTGTTAGCTGTTACACTGTGTTCT
CTCATTCAATTTGTGTCCTAACATGTGTCGTCGACTATTATATTTCAAAT
CTAGGCTTCTTGTTTTTTTCGGCCCTTCTTGTGTTTTTTTCGCGCTCTCG
CATTAGATTTAGGGTCTCCAAAGGACGTCATCCATAAAAATTACTTGGTG
TAGCATAACAAAATATAACTTGACGTTTGGTAACTAACGTGACGTTTTCT
TTCTTCACGCCGACAGATGATGAGGACGATGCTGGGGCACCTATTGCCAT
CCTGATCGGTATTTTTTGCAGTTTCGGGGTC Coding sequence (CDS) from alignment at Sc0000055:1083423..1087053- >transcript:BL97429_cuf17 ID=transcript:BL97429_cuf17|Name=transcript:BL97429_cuf17|organism=Branchiostoma lanceolatum|type=CDS|length=1197bp|location=Sequence derived from alignment at Sc0000055:1083423..1087053- (Branchiostoma lanceolatum)
ACGTCCGATAGAATCCGGCTTGTTGGCGGTTCTACCTCCTCTGAAGGCCG
CCTGGAAGTCCGTCCAGCCGACAGTTACGTCTGGGGGACCGTCTGTGACG
ACTTCTTCGACGCGCAAGACGCCGAAGTCGCCTGCAGAACTCTGGGATAT
GCCACCGCCATAGAATATGGTGATTCGGCAGCTTTAGATTTCGGGCAAGG
CACCGGGCAAATCTACATGGATGATCTTGGATGCTCTGGGACCGAGACTA
CTTTATTCGACTGCTCGTACGCAGGGTGGGGAGTGCATAACTGTGGGCAT
AGTGAAGATGTCGGTGTCGTCTGCGCCACGTCAGATGATGAGGACGATGC
TGGGGCACCTATTGCCATCCTGATCGGTATTTTTTGCAGTTTCGGGGTCA
CGTCCGATAGAATCCGGCTTGTTGGCGGTTCTACCTCCTCTGAAGGCCGC
CTGGAAGTCCGTCCAGCCGACAGTTACGTCTGGGGGACCGTCTGTGACGA
CTTCTTCGACGCGCAAGACGCCGAAGTCGCCTGCAGAACTCTGGGATATG
CCACCGCCATAGAATATGGTGATTCGGCAGCTTTAGATTTCGGGCAAGGC
ACCGGGCAAATCTACATGGATGATCTTGGATGCTCTGGGACCGAGACTAC
TTTATTCGACTGCTCGTACGCAGGGTGGGGAGTGCATAACTGTGGGCATA
GTGAAGATGTCGGTGTCGTCTGCGCCACGTCAGATGATGAGGACGATGCT
GGGGCACCTATTGCCATCCTGATCGGTATTTTTTGCAGTTTCGGGGTCAC
GTCCGATAGAATCCGGCTTGTTGGCGGTTCTACCTCCTCTGAAGGCCGCC
TGGAAGTCCGTCCAGCCGACAGTTACGTCTGGGGGACCGTCTGTGACGAC
TTCTTCGACGCGCAAGACGCCGAAGTCGCCTGCAGAACTCTGGGATATGC
CACCGCCATAGAATATGGTGATTCGGCAGCTTTAGATTTCGGGCAAGGCA
CCGGGCAAATCTACATGGATGATCTTGGATGCTCTGGGACCGAGACTACT
TTATTCGACTGCTCGTACGCAGGGTGGGGAGTGCATAACTGTGGGCATAG
TGAAGATGTCGGTGTCGTCTGCGCCACGTCAGATGATGAGGACGATGCTG
GGGCACCTATTGCCATCCTGATCGGTATTTTTTGCAGTTTCGGGGTC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000055 | genome | Sc0000055:1083423..1087053 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL97429_cuf17 |
| Biotype | protein_coding |
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